RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 KIAA1468Q9P260 1216 aa9.98□□□□□ -0.81
SPG11-204ENST00000557866 PTPRUQ92729 1446 aa9.98□□□□□ -0.81
SPG11-204ENST00000557866 TRIM6-TRIM34B2RNG4 842 aa9.97□□□□□ -0.81
SPG11-204ENST00000557866 PLCB2Q00722 1185 aa9.97□□□□□ -0.81
SPG11-204ENST00000557866 LAPTM4BQ86VI4 370 aa9.97□□□□□ -0.81
SPG11-204ENST00000557866 SLC26A8Q96RN1 970 aa9.97□□□□□ -0.81
SPG11-204ENST00000557866 ROBO2Q9HCK4 1378 aa9.97□□□□□ -0.81
SPG11-204ENST00000557866 RIMS1Q86UR5 1692 aaKnown RBP9.96□□□□□ -0.81
SPG11-204ENST00000557866 PPP2R1AP30153 589 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 PTPN5P54829 565 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 SRPK2P78362 688 aaKnown RBP9.96□□□□□ -0.82
SPG11-204ENST00000557866 TSR1Q2NL82 804 aaKnown RBP9.96□□□□□ -0.82
SPG11-204ENST00000557866 THSD4Q6ZMP0 1018 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 CERKQ8TCT0 537 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 TBX22Q9Y458 520 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 GTF3C3Q9Y5Q9 886 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 ANKRD36BQ8N2N9 1353 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 FAM135BQ49AJ0 1406 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 NSD3Q9BZ95 1437 aa9.96□□□□□ -0.82
SPG11-204ENST00000557866 ATAD2Q6PL18 1390 aa9.95□□□□□ -0.82
SPG11-204ENST00000557866 CEP170BQ9Y4F5 1589 aaPredicted RBP9.94□□□□□ -0.82
SPG11-204ENST00000557866 WASLO00401 505 aaPredicted RBP9.94□□□□□ -0.82
SPG11-204ENST00000557866 OSBPP22059 807 aa9.94□□□□□ -0.82
SPG11-204ENST00000557866 PLA2G2EQ9NZK7 142 aa9.94□□□□□ -0.82
SPG11-204ENST00000557866 CD163L1Q9NR16 1453 aa9.93□□□□□ -0.82
SPG11-204ENST00000557866 A0A1W2PP64 1363 aa9.93□□□□□ -0.82
SPG11-204ENST00000557866 NINLQ9Y2I6 1382 aa9.93□□□□□ -0.82
SPG11-204ENST00000557866 PACS2Q86VP3 889 aa9.93□□□□□ -0.82
SPG11-204ENST00000557866 CABP1Q9NZU7 370 aa9.93□□□□□ -0.82
SPG11-204ENST00000557866 AMOTL2Q9Y2J4 779 aa9.93□□□□□ -0.82
SPG11-204ENST00000557866 CPS1P31327 1500 aa9.92□□□□□ -0.82
SPG11-204ENST00000557866 ANKK1Q8NFD2 765 aa9.92□□□□□ -0.82
SPG11-204ENST00000557866 KCNV2Q8TDN2 545 aa9.92□□□□□ -0.82
SPG11-204ENST00000557866 ZBED9Q6R2W3 1325 aa9.91□□□□□ -0.82
SPG11-204ENST00000557866 PRIM1P49642 420 aaKnown RBP9.91□□□□□ -0.82
SPG11-204ENST00000557866 ANKLE2Q86XL3 938 aa9.91□□□□□ -0.82
SPG11-204ENST00000557866 KNDC1Q76NI1 1749 aa9.9□□□□□ -0.82
SPG11-204ENST00000557866 PRR36Q9H6K5 1346 aa9.9□□□□□ -0.82
SPG11-204ENST00000557866 PRSS12P56730 875 aa9.9□□□□□ -0.82
SPG11-204ENST00000557866 MORC1Q86VD1 984 aa9.9□□□□□ -0.82
SPG11-204ENST00000557866 ZFRQ96KR1 1074 aaKnown RBP9.9□□□□□ -0.82
SPG11-204ENST00000557866 CGNL1Q0VF96 1302 aa9.89□□□□□ -0.83
SPG11-204ENST00000557866 SENP3-EIF4A1A0A087X0R7 540 aa9.89□□□□□ -0.83
SPG11-204ENST00000557866 FAM98CQ17RN3 349 aaKnown RBP9.89□□□□□ -0.83
SPG11-204ENST00000557866 NUDT16Q96DE0 195 aaKnown RBP9.89□□□□□ -0.83
SPG11-204ENST00000557866 CDCA7LQ96GN5 454 aa9.89□□□□□ -0.83
SPG11-204ENST00000557866 TERF2IPQ9NYB0 399 aa9.89□□□□□ -0.83
SPG11-204ENST00000557866 TSKSQ9UJT2 592 aa9.89□□□□□ -0.83
SPG11-204ENST00000557866 PTCH1Q13635 1447 aa9.89□□□□□ -0.83
SPG11-204ENST00000557866 INSRP06213 1382 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 FYB1O15117 783 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 KCNA6P17658 529 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 HDGFL2Q7Z4V5 671 aaPredicted RBP9.88□□□□□ -0.83
SPG11-204ENST00000557866 SEPT9Q9UHD8 586 aaPredicted RBP9.88□□□□□ -0.83
SPG11-204ENST00000557866 ADAMTS8Q9UP79 889 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 DIP2AQ14689 1571 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 NSD2O96028 1365 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 PIK3R4Q99570 1358 aa9.88□□□□□ -0.83
SPG11-204ENST00000557866 ZNF142P52746 1687 aaPredicted RBP9.87□□□□□ -0.83
SPG11-204ENST00000557866 USP32Q8NFA0 1604 aa9.87□□□□□ -0.83
SPG11-204ENST00000557866 SOWAHBA6NEL2 793 aa9.87□□□□□ -0.83
SPG11-204ENST00000557866 TNNT2P45379 298 aaPredicted RBP9.87□□□□□ -0.83
SPG11-204ENST00000557866 CPSF1Q10570 1443 aaKnown RBP9.87□□□□□ -0.83
SPG11-204ENST00000557866 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.87□□□□□ -0.83
SPG11-204ENST00000557866 ATP7BP35670 1465 aa9.86□□□□□ -0.83
SPG11-204ENST00000557866 BLMP54132 1417 aaPredicted RBP9.86□□□□□ -0.83
SPG11-204ENST00000557866 PPIP5K1Q6PFW1 1433 aa9.86□□□□□ -0.83
SPG11-204ENST00000557866 GGNBP2Q9H3C7 697 aa9.86□□□□□ -0.83
SPG11-204ENST00000557866 POLR3AO14802 1390 aaPredicted RBP9.86□□□□□ -0.83
SPG11-204ENST00000557866 ADGRB2O60241 1585 aa9.85□□□□□ -0.83
SPG11-204ENST00000557866 MTHFSP49914 203 aa9.85□□□□□ -0.83
SPG11-204ENST00000557866 RBM27Q9P2N5 1060 aaKnown RBP9.85□□□□□ -0.83
SPG11-204ENST00000557866 NPHP4O75161 1426 aaPredicted RBP9.84□□□□□ -0.83
SPG11-204ENST00000557866 PLEKHG3A1L390 1219 aa9.84□□□□□ -0.83
SPG11-204ENST00000557866 NUTM2FA1L443 756 aa9.84□□□□□ -0.83
SPG11-204ENST00000557866 BCAMP50895 628 aa9.84□□□□□ -0.83
SPG11-204ENST00000557866 CDHR5Q9HBB8 845 aa9.84□□□□□ -0.83
SPG11-204ENST00000557866 XRN1Q8IZH2 1706 aaKnown RBP9.84□□□□□ -0.83
SPG11-204ENST00000557866 SETD1BQ9UPS6 1966 aaKnown RBP9.83□□□□□ -0.84
SPG11-204ENST00000557866 MLLT3P42568 568 aaPredicted RBP9.83□□□□□ -0.84
SPG11-204ENST00000557866 NYAP1Q6ZVC0 841 aa9.83□□□□□ -0.84
SPG11-204ENST00000557866 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.83□□□□□ -0.84
SPG11-204ENST00000557866 EDC4Q6P2E9 1401 aaKnown RBP9.82□□□□□ -0.84
SPG11-204ENST00000557866 NBPF26B4DH59 902 aa9.82□□□□□ -0.84
SPG11-204ENST00000557866 WDR43Q15061 677 aaKnown RBP eCLIP9.82□□□□□ -0.84
SPG11-204ENST00000557866 NME9Q86XW9 330 aa9.82□□□□□ -0.84
SPG11-204ENST00000557866 TATDN2Q93075 761 aa9.82□□□□□ -0.84
SPG11-204ENST00000557866 LRCH3Q96II8 777 aa9.82□□□□□ -0.84
SPG11-204ENST00000557866 NPDC1Q9NQX5 325 aaPredicted RBP9.82□□□□□ -0.84
SPG11-204ENST00000557866 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.82□□□□□ -0.84
SPG11-204ENST00000557866 FAM198AQ9UFP1 575 aa9.82□□□□□ -0.84
SPG11-204ENST00000557866 CDC42BPGQ6DT37 1551 aa9.82□□□□□ -0.84
SPG11-204ENST00000557866 FBLN1P23142 703 aa9.81□□□□□ -0.84
SPG11-204ENST00000557866 HAP1P54257 671 aaPredicted RBP9.81□□□□□ -0.84
SPG11-204ENST00000557866 IFFO2Q5TF58 517 aa9.81□□□□□ -0.84
SPG11-204ENST00000557866 PNMA3Q9UL41 463 aa9.81□□□□□ -0.84
SPG11-204ENST00000557866 SALL2Q9Y467 1007 aaPredicted RBP9.81□□□□□ -0.84
SPG11-204ENST00000557866 SMG6Q86US8 1419 aaKnown RBP9.81□□□□□ -0.84
SPG11-204ENST00000557866 ACEP12821 1306 aa9.81□□□□□ -0.84
SPG11-204ENST00000557866 NKTRP30414 1462 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms