RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TTC21AQ8NDW8 1320 aa17.77■□□□□ 0.44
SHMT2-230ENST00000557427 CAPN15O75808 1086 aa17.77■□□□□ 0.44
SHMT2-230ENST00000557427 ZNF692Q9BU19 519 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-230ENST00000557427 WWC3Q9ULE0 1092 aa17.77■□□□□ 0.44
SHMT2-230ENST00000557427 ANKRD24Q8TF21 1146 aa17.76■□□□□ 0.43
SHMT2-230ENST00000557427 L3MBTL2Q969R5 705 aa17.76■□□□□ 0.43
SHMT2-230ENST00000557427 SYTL4Q96C24 671 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-230ENST00000557427 CCNL1Q9UK58 526 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-230ENST00000557427 ANKRD36BQ8N2N9 1353 aa17.75■□□□□ 0.43
SHMT2-230ENST00000557427 DOT1LQ8TEK3 1739 aa17.72■□□□□ 0.43
SHMT2-230ENST00000557427 IGSF1Q8N6C5 1336 aa17.72■□□□□ 0.43
SHMT2-230ENST00000557427 USP31Q70CQ4 1352 aa17.71■□□□□ 0.43
SHMT2-230ENST00000557427 TOMM70O94826 608 aa17.71■□□□□ 0.43
SHMT2-230ENST00000557427 HTRA3P83110 453 aa17.71■□□□□ 0.43
SHMT2-230ENST00000557427 LTN1O94822 1766 aa17.71■□□□□ 0.43
SHMT2-230ENST00000557427 EVC2Q86UK5 1308 aa17.71■□□□□ 0.42
SHMT2-230ENST00000557427 KTN1Q86UP2 1357 aaKnown RBP17.7■□□□□ 0.42
SHMT2-230ENST00000557427 PRELPP51888 382 aa17.69■□□□□ 0.42
SHMT2-230ENST00000557427 AMIGO3Q86WK7 504 aa17.69■□□□□ 0.42
SHMT2-230ENST00000557427 NME9Q86XW9 330 aa17.69■□□□□ 0.42
SHMT2-230ENST00000557427 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHMT2-230ENST00000557427 JMYQ8N9B5 988 aa17.69■□□□□ 0.42
SHMT2-230ENST00000557427 USP54Q70EL1 1684 aa17.67■□□□□ 0.42
SHMT2-230ENST00000557427 WDR90Q96KV7 1748 aa17.67■□□□□ 0.42
SHMT2-230ENST00000557427 KLRG1Q96E93 195 aa17.67■□□□□ 0.42
SHMT2-230ENST00000557427 PCNTO95613 3336 aa17.66■□□□□ 0.42
SHMT2-230ENST00000557427 SMIM5Q71RC9 77 aa17.66■□□□□ 0.42
SHMT2-230ENST00000557427 TNS4Q8IZW8 715 aa17.66■□□□□ 0.42
SHMT2-230ENST00000557427 NMRK2Q9NPI5 230 aa17.66■□□□□ 0.42
SHMT2-230ENST00000557427 CICQ96RK0 1608 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-230ENST00000557427 C5P01031 1676 aa17.65■□□□□ 0.42
SHMT2-230ENST00000557427 MON2Q7Z3U7 1717 aa17.65■□□□□ 0.42
SHMT2-230ENST00000557427 USP47Q96K76 1375 aa17.65■□□□□ 0.42
SHMT2-230ENST00000557427 SBNO2Q9Y2G9 1366 aa17.64■□□□□ 0.41
SHMT2-230ENST00000557427 FLAD1Q8NFF5 587 aa17.63■□□□□ 0.41
SHMT2-230ENST00000557427 LTV1Q96GA3 475 aaPredicted RBP17.63■□□□□ 0.41
SHMT2-230ENST00000557427 CD163L1Q9NR16 1453 aa17.63■□□□□ 0.41
SHMT2-230ENST00000557427 TOGARAM1Q9Y4F4 1720 aa17.62■□□□□ 0.41
SHMT2-230ENST00000557427 ZCRB1Q8TBF4 217 aaKnown RBP17.62■□□□□ 0.41
SHMT2-230ENST00000557427 IP6K1Q92551 441 aa17.62■□□□□ 0.41
SHMT2-230ENST00000557427 TAF1LQ8IZX4 1826 aa17.62■□□□□ 0.41
SHMT2-230ENST00000557427 FAM208AQ9UK61 1670 aaKnown RBP17.61■□□□□ 0.41
SHMT2-230ENST00000557427 MEGF6O75095 1541 aa17.61■□□□□ 0.41
SHMT2-230ENST00000557427 RBM46Q8TBY0 533 aaKnown RBP17.6■□□□□ 0.41
SHMT2-230ENST00000557427 RGPD2P0DJD1 1756 aa17.58■□□□□ 0.4
SHMT2-230ENST00000557427 PHF14O94880 888 aa17.57■□□□□ 0.4
SHMT2-230ENST00000557427 C4BP0C0L5 1744 aa17.57■□□□□ 0.4
SHMT2-230ENST00000557427 PXDNLA1KZ92 1463 aa17.56■□□□□ 0.4
SHMT2-230ENST00000557427 PALLDQ8WX93 1383 aa17.56■□□□□ 0.4
SHMT2-230ENST00000557427 KIAA1551Q9HCM1 1747 aa17.56■□□□□ 0.4
SHMT2-230ENST00000557427 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.56■□□□□ 0.4
SHMT2-230ENST00000557427 UBR3Q6ZT12 1888 aa17.56■□□□□ 0.4
SHMT2-230ENST00000557427 TONSLQ96HA7 1378 aa17.55■□□□□ 0.4
SHMT2-230ENST00000557427 ROCK2O75116 1388 aaKnown RBP17.54■□□□□ 0.4
SHMT2-230ENST00000557427 FBLN1P23142 703 aa17.54■□□□□ 0.4
SHMT2-230ENST00000557427 AK7Q96M32 723 aa17.54■□□□□ 0.4
SHMT2-230ENST00000557427 HOXC9P31274 260 aa17.53■□□□□ 0.4
SHMT2-230ENST00000557427 FSTL1Q12841 308 aa17.53■□□□□ 0.4
SHMT2-230ENST00000557427 BCS1LQ9Y276 419 aa17.53■□□□□ 0.4
SHMT2-230ENST00000557427 N4BP2Q86UW6 1770 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-230ENST00000557427 MAP3K19Q56UN5 1328 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 A0A0G2JLW4 131 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 SLC34A2O95436 690 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 NBPF6Q5VWK0 638 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 MPRIPQ6WCQ1 1025 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 ARHGAP27Q6ZUM4 889 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 NBPF4Q96M43 638 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 SLC12A5Q9H2X9 1139 aa17.52■□□□□ 0.4
SHMT2-230ENST00000557427 KIF13BQ9NQT8 1826 aa17.51■□□□□ 0.39
SHMT2-230ENST00000557427 CARD11Q9BXL7 1154 aa17.51■□□□□ 0.39
SHMT2-230ENST00000557427 EDC4Q6P2E9 1401 aaKnown RBP17.5■□□□□ 0.39
SHMT2-230ENST00000557427 SSFA2P28290 1259 aa17.5■□□□□ 0.39
SHMT2-230ENST00000557427 USHBP1Q8N6Y0 703 aa17.5■□□□□ 0.39
SHMT2-230ENST00000557427 ZNF316A6NFI3 1004 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-230ENST00000557427 MMP10P09238 476 aa17.49■□□□□ 0.39
SHMT2-230ENST00000557427 HSPA1AP0DMV8 641 aaKnown RBP17.49■□□□□ 0.39
SHMT2-230ENST00000557427 HSPA1BP0DMV9 641 aaKnown RBP17.49■□□□□ 0.39
SHMT2-230ENST00000557427 TGFB2P61812 414 aa17.49■□□□□ 0.39
SHMT2-230ENST00000557427 C9orf131Q5VYM1 1079 aa17.49■□□□□ 0.39
SHMT2-230ENST00000557427 C16orf71Q8IYS4 520 aaPredicted RBP17.49■□□□□ 0.39
SHMT2-230ENST00000557427 LINC00116Q8NCU8 138 aa17.49■□□□□ 0.39
SHMT2-230ENST00000557427 KCPQ6ZWJ8 1503 aa17.48■□□□□ 0.39
SHMT2-230ENST00000557427 TMC1Q8TDI8 760 aa17.48■□□□□ 0.39
SHMT2-230ENST00000557427 MAP2P11137 1827 aaKnown RBP17.47■□□□□ 0.39
SHMT2-230ENST00000557427 HMGB2P26583 209 aaKnown RBP17.47■□□□□ 0.39
SHMT2-230ENST00000557427 HDGFL2Q7Z4V5 671 aaPredicted RBP17.47■□□□□ 0.39
SHMT2-230ENST00000557427 RRAGCQ9HB90 399 aa17.47■□□□□ 0.39
SHMT2-230ENST00000557427 A0A1W2PP64 1363 aa17.46■□□□□ 0.39
SHMT2-230ENST00000557427 CYP27B1O15528 508 aa17.46■□□□□ 0.39
SHMT2-230ENST00000557427 DPEP1P16444 411 aa17.46■□□□□ 0.39
SHMT2-230ENST00000557427 AMPHP49418 695 aa17.46■□□□□ 0.39
SHMT2-230ENST00000557427 PIGBQ92521 554 aa17.46■□□□□ 0.39
SHMT2-230ENST00000557427 ITGB4P16144 1822 aa17.46■□□□□ 0.39
SHMT2-230ENST00000557427 CGNL1Q0VF96 1302 aa17.46■□□□□ 0.38
SHMT2-230ENST00000557427 FCHSD2O94868 740 aa17.45■□□□□ 0.38
SHMT2-230ENST00000557427 KCNA3P22001 575 aa17.45■□□□□ 0.38
SHMT2-230ENST00000557427 SMARCC1Q92922 1105 aaPredicted RBP17.45■□□□□ 0.38
SHMT2-230ENST00000557427 C10orf71Q711Q0 1435 aa17.45■□□□□ 0.38
SHMT2-230ENST00000557427 NSD3Q9BZ95 1437 aa17.45■□□□□ 0.38
SHMT2-230ENST00000557427 BRCA1P38398 1863 aaKnown RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms