RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 BTAF1O14981 1849 aa31.31■■■□□ 2.6
ACTN1-220ENST00000556433 CASZ1Q86V15 1759 aa31.31■■■□□ 2.6
ACTN1-220ENST00000556433 CCER1Q8TC90 406 aaPredicted RBP31.31■■■□□ 2.6
ACTN1-220ENST00000556433 LRRC4BQ9NT99 713 aa31.31■■■□□ 2.6
ACTN1-220ENST00000556433 FLT4P35916 1363 aa31.3■■■□□ 2.6
ACTN1-220ENST00000556433 CGNL1Q0VF96 1302 aa31.3■■■□□ 2.6
ACTN1-220ENST00000556433 KIF24Q5T7B8 1368 aa31.3■■■□□ 2.6
ACTN1-220ENST00000556433 KIF20BQ96Q89 1820 aa31.29■■■□□ 2.6
ACTN1-220ENST00000556433 TATP17735 454 aaPredicted RBP31.29■■■□□ 2.6
ACTN1-220ENST00000556433 EMILIN1Q9Y6C2 1016 aa31.29■■■□□ 2.6
ACTN1-220ENST00000556433 MYOM1P52179 1685 aa31.28■■■□□ 2.6
ACTN1-220ENST00000556433 PTGER2P43116 358 aa31.27■■■□□ 2.6
ACTN1-220ENST00000556433 EIF4G2P78344 907 aaKnown RBP eCLIP31.27■■■□□ 2.66e-7■■■■■ 48.9
ACTN1-220ENST00000556433 SLC27A3Q5K4L6 730 aa31.27■■■□□ 2.6
ACTN1-220ENST00000556433 PPM1GO15355 546 aaPredicted RBP31.26■■■□□ 2.59
ACTN1-220ENST00000556433 ZNF827Q17R98 1081 aa31.25■■■□□ 2.59
ACTN1-220ENST00000556433 MTFR1LQ9H019 292 aa31.25■■■□□ 2.59
ACTN1-220ENST00000556433 DCAF8L1A6NGE4 600 aa31.23■■■□□ 2.59
ACTN1-220ENST00000556433 HSPA5P11021 654 aaKnown RBP31.23■■■□□ 2.59
ACTN1-220ENST00000556433 KCNQ4P56696 695 aa31.21■■■□□ 2.59
ACTN1-220ENST00000556433 AKT1S1Q96B36 256 aa31.21■■■□□ 2.59
ACTN1-220ENST00000556433 NSD2O96028 1365 aa31.2■■■□□ 2.59
ACTN1-220ENST00000556433 PAPPAQ13219 1627 aa31.2■■■□□ 2.58
ACTN1-220ENST00000556433 SHANK3Q9BYB0 1731 aa31.18■■■□□ 2.58
ACTN1-220ENST00000556433 WASHC2AQ641Q2 1341 aa31.18■■■□□ 2.58
ACTN1-220ENST00000556433 PCDH11XQ9BZA7 1347 aa31.18■■■□□ 2.58
ACTN1-220ENST00000556433 PCDH11YQ9BZA8 1340 aa31.18■■■□□ 2.58
ACTN1-220ENST00000556433 SGIP1Q9BQI5 828 aa31.17■■■□□ 2.58
ACTN1-220ENST00000556433 DOT1LQ8TEK3 1739 aa31.16■■■□□ 2.58
ACTN1-220ENST00000556433 POLKQ9UBT6 870 aa31.16■■■□□ 2.58
ACTN1-220ENST00000556433 CCNL1Q9UK58 526 aaPredicted RBP31.15■■■□□ 2.58
ACTN1-220ENST00000556433 TNNT2P45379 298 aaPredicted RBP31.14■■■□□ 2.58
ACTN1-220ENST00000556433 PANK3Q9H999 370 aa31.14■■■□□ 2.58
ACTN1-220ENST00000556433 TFCP2L1Q9NZI6 479 aa31.14■■■□□ 2.58
ACTN1-220ENST00000556433 CYP27B1O15528 508 aa31.13■■■□□ 2.57
ACTN1-220ENST00000556433 FHDC1Q9C0D6 1143 aaPredicted RBP31.13■■■□□ 2.57
ACTN1-220ENST00000556433 SLC16A10Q8TF71 515 aa31.11■■■□□ 2.57
ACTN1-220ENST00000556433 ARXQ96QS3 562 aa31.11■■■□□ 2.57
ACTN1-220ENST00000556433 EYA1Q99502 592 aa31.11■■■□□ 2.57
ACTN1-220ENST00000556433 SYT17Q9BSW7 474 aa31.11■■■□□ 2.57
ACTN1-220ENST00000556433 PNPLA7Q6ZV29 1317 aa31.1■■■□□ 2.57
ACTN1-220ENST00000556433 YY1P25490 414 aa31.09■■■□□ 2.57
ACTN1-220ENST00000556433 MPRIPQ6WCQ1 1025 aa31.09■■■□□ 2.57
ACTN1-220ENST00000556433 SPG7Q9UQ90 795 aa31.08■■■□□ 2.57
ACTN1-220ENST00000556433 MAP2P11137 1827 aaKnown RBP31.07■■■□□ 2.56
ACTN1-220ENST00000556433 NCAPD2Q15021 1401 aa31.06■■■□□ 2.56
ACTN1-220ENST00000556433 LY75O60449 1722 aa31.05■■■□□ 2.56
ACTN1-220ENST00000556433 EIF4A2Q14240 407 aaKnown RBP31.04■■■□□ 2.56
ACTN1-220ENST00000556433 NKX1-1Q15270 411 aaPredicted RBP31.03■■■□□ 2.56
ACTN1-220ENST00000556433 ANKRD26Q9UPS8 1709 aa31.02■■■□□ 2.56
ACTN1-220ENST00000556433 POLD1P28340 1107 aa31.02■■■□□ 2.56
ACTN1-220ENST00000556433 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.02■■■□□ 2.567e-7■■■□□ 15.2
ACTN1-220ENST00000556433 MSH5O43196 834 aa31■■■□□ 2.55
ACTN1-220ENST00000556433 SMARCC1Q92922 1105 aaPredicted RBP31■■■□□ 2.55
ACTN1-220ENST00000556433 PALLDQ8WX93 1383 aa31■■■□□ 2.55
ACTN1-220ENST00000556433 HMGB2P26583 209 aaKnown RBP30.99■■■□□ 2.55
ACTN1-220ENST00000556433 PIGBQ92521 554 aa30.99■■■□□ 2.55
ACTN1-220ENST00000556433 MORC1Q86VD1 984 aa30.98■■■□□ 2.55
ACTN1-220ENST00000556433 COL23A1Q86Y22 540 aaPredicted RBP30.98■■■□□ 2.55
ACTN1-220ENST00000556433 IFNL2Q8IZJ0 200 aa30.97■■■□□ 2.55
ACTN1-220ENST00000556433 QSER1Q2KHR3 1735 aa30.97■■■□□ 2.55
ACTN1-220ENST00000556433 PKD1L3Q7Z443 1732 aa30.96■■■□□ 2.55
ACTN1-220ENST00000556433 PHKG2P15735 406 aa30.95■■■□□ 2.55
ACTN1-220ENST00000556433 KLHL34Q8N239 644 aa30.95■■■□□ 2.55
ACTN1-220ENST00000556433 KNSTRNQ9Y448 316 aa30.95■■■□□ 2.55
ACTN1-220ENST00000556433 MAP3K5Q99683 1374 aa30.94■■■□□ 2.54
ACTN1-220ENST00000556433 TUBGCP6Q96RT7 1819 aa30.92■■■□□ 2.54
ACTN1-220ENST00000556433 TMOD3Q9NYL9 352 aa30.92■■■□□ 2.54
ACTN1-220ENST00000556433 IGSF1Q8N6C5 1336 aa30.92■■■□□ 2.54
ACTN1-220ENST00000556433 TOGARAM1Q9Y4F4 1720 aa30.91■■■□□ 2.54
ACTN1-220ENST00000556433 ITGB4P16144 1822 aa30.9■■■□□ 2.54
ACTN1-220ENST00000556433 FLAD1Q8NFF5 587 aa30.9■■■□□ 2.54
ACTN1-220ENST00000556433 PLEKHO1Q53GL0 409 aaPredicted RBP30.87■■■□□ 2.53
ACTN1-220ENST00000556433 MSL1Q68DK7 614 aa30.87■■■□□ 2.53
ACTN1-220ENST00000556433 AK7Q96M32 723 aa30.87■■■□□ 2.53
ACTN1-220ENST00000556433 ASAP1Q9ULH1 1129 aa30.87■■■□□ 2.53
ACTN1-220ENST00000556433 LOC102724428A0A0B4J2F2 783 aa30.86■■■□□ 2.53
ACTN1-220ENST00000556433 SIK1P57059 783 aa30.86■■■□□ 2.53
ACTN1-220ENST00000556433 KIF7Q2M1P5 1343 aa30.86■■■□□ 2.53
ACTN1-220ENST00000556433 C5P01031 1676 aa30.85■■■□□ 2.53
ACTN1-220ENST00000556433 GPR162Q16538 588 aa30.85■■■□□ 2.53
ACTN1-220ENST00000556433 COL24A1Q17RW2 1714 aa30.84■■■□□ 2.53
ACTN1-220ENST00000556433 PLEKHG2Q9H7P9 1386 aa30.84■■■□□ 2.53
ACTN1-220ENST00000556433 AMER1Q5JTC6 1135 aaPredicted RBP30.82■■■□□ 2.52
ACTN1-220ENST00000556433 ATG3Q9NT62 314 aa30.82■■■□□ 2.52
ACTN1-220ENST00000556433 HSP90AB1P08238 724 aaKnown RBP30.81■■■□□ 2.52
ACTN1-220ENST00000556433 AMOTQ4VCS5 1084 aa30.81■■■□□ 2.52
ACTN1-220ENST00000556433 AEBP1Q8IUX7 1158 aa30.81■■■□□ 2.52
ACTN1-220ENST00000556433 NLGN2Q8NFZ4 835 aa30.81■■■□□ 2.52
ACTN1-220ENST00000556433 TAF1LQ8IZX4 1826 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 ERVV-2B6SEH9 535 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 PHF14O94880 888 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 ATP6V1AP38606 617 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 ZNF530Q6P9A1 599 aaPredicted RBP30.8■■■□□ 2.52
ACTN1-220ENST00000556433 AMIGO3Q86WK7 504 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 LINC00116Q8NCU8 138 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 DCAF5Q96JK2 942 aa30.8■■■□□ 2.52
ACTN1-220ENST00000556433 SMIM5Q71RC9 77 aa30.79■■■□□ 2.52
ACTN1-220ENST00000556433 PELP1Q8IZL8 1130 aaKnown RBP30.79■■■□□ 2.52
ACTN1-220ENST00000556433 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP30.78■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms