RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SNRKQ9NRH2 765 aa9.13□□□□□ -0.95
SCFD1-219ENST00000556413 MCCD1P59942 119 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-219ENST00000556413 RNF20Q5VTR2 975 aa9.12□□□□□ -0.95
SCFD1-219ENST00000556413 CC2D2BQ6DHV5 1058 aa9.12□□□□□ -0.95
SCFD1-219ENST00000556413 NDUFB9Q9Y6M9 179 aa9.12□□□□□ -0.95
SCFD1-219ENST00000556413 A0A1W2PRU2 124 aa9.11□□□□□ -0.95
SCFD1-219ENST00000556413 RHOQP17081 205 aa9.11□□□□□ -0.95
SCFD1-219ENST00000556413 CUEDC1Q9NWM3 386 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-219ENST00000556413 MEN1O00255 615 aa9.1□□□□□ -0.95
SCFD1-219ENST00000556413 SCTRP47872 440 aa9.1□□□□□ -0.95
SCFD1-219ENST00000556413 ZNF330Q9Y3S2 320 aaPredicted RBP9.1□□□□□ -0.95
SCFD1-219ENST00000556413 SLURP2P0DP57 97 aa9.09□□□□□ -0.95
SCFD1-219ENST00000556413 GPC1P35052 558 aa9.09□□□□□ -0.95
SCFD1-219ENST00000556413 ZNF385CQ66K41 422 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-219ENST00000556413 ZNF592Q92610 1267 aa9.09□□□□□ -0.95
SCFD1-219ENST00000556413 TPRNQ4KMQ1 711 aa9.08□□□□□ -0.96
SCFD1-219ENST00000556413 WHAMMQ8TF30 809 aa9.08□□□□□ -0.96
SCFD1-219ENST00000556413 ADAMTS8Q9UP79 889 aa9.08□□□□□ -0.96
SCFD1-219ENST00000556413 PCDHB11Q9Y5F2 797 aa9.08□□□□□ -0.96
SCFD1-219ENST00000556413 APBB1O00213 710 aa9.07□□□□□ -0.96
SCFD1-219ENST00000556413 GSK3AP49840 483 aa9.07□□□□□ -0.96
SCFD1-219ENST00000556413 KCNMA1Q12791 1236 aa9.07□□□□□ -0.96
SCFD1-219ENST00000556413 CYP2U1Q7Z449 544 aa9.07□□□□□ -0.96
SCFD1-219ENST00000556413 OSBPL3Q9H4L5 887 aa9.07□□□□□ -0.96
SCFD1-219ENST00000556413 TRAK2O60296 914 aa9.06□□□□□ -0.96
SCFD1-219ENST00000556413 CLN3Q13286 438 aa9.06□□□□□ -0.96
SCFD1-219ENST00000556413 SVOPQ8N4V2 548 aa9.06□□□□□ -0.96
SCFD1-219ENST00000556413 POU4F2Q12837 409 aa9.05□□□□□ -0.96
SCFD1-219ENST00000556413 NLRP3Q96P20 1036 aa9.05□□□□□ -0.96
SCFD1-219ENST00000556413 GRIP2Q9C0E4 1043 aa9.05□□□□□ -0.96
SCFD1-219ENST00000556413 ADAMTS2O95450 1211 aa9.04□□□□□ -0.96
SCFD1-219ENST00000556413 GAS6Q14393 721 aa9.04□□□□□ -0.96
SCFD1-219ENST00000556413 SLC27A3Q5K4L6 730 aa9.04□□□□□ -0.96
SCFD1-219ENST00000556413 TRIM22Q8IYM9 498 aa9.04□□□□□ -0.96
SCFD1-219ENST00000556413 ZNF837Q96EG3 531 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-219ENST00000556413 ARHGEF10LQ9HCE6 1279 aa9.04□□□□□ -0.96
SCFD1-219ENST00000556413 CEP126Q9P2H0 1117 aa9.04□□□□□ -0.96
SCFD1-219ENST00000556413 ARHGEF15O94989 841 aa9.03□□□□□ -0.96
SCFD1-219ENST00000556413 DYRK1BQ9Y463 629 aa9.03□□□□□ -0.96
SCFD1-219ENST00000556413 SRSF11Q05519 484 aaKnown RBP9.02□□□□□ -0.97
SCFD1-219ENST00000556413 DBN1Q16643 649 aa9.02□□□□□ -0.97
SCFD1-219ENST00000556413 GMCL1Q96IK5 515 aa9.02□□□□□ -0.97
SCFD1-219ENST00000556413 CCDC85AQ96PX6 553 aaPredicted RBP9.02□□□□□ -0.97
SCFD1-219ENST00000556413 ESF1Q9H501 851 aaKnown RBP9.02□□□□□ -0.97
SCFD1-219ENST00000556413 TBC1D2BQ9UPU7 963 aa9.02□□□□□ -0.97
SCFD1-219ENST00000556413 NBPF10Q6P3W6 841 aaKnown RBP9.01□□□□□ -0.97
SCFD1-219ENST00000556413 LYPD4Q6UWN0 246 aa9.01□□□□□ -0.97
SCFD1-219ENST00000556413 RIPOR1Q6ZS17 1223 aa9.01□□□□□ -0.97
SCFD1-219ENST00000556413 NBPF15Q8N660 670 aa9.01□□□□□ -0.97
SCFD1-219ENST00000556413 CDCA7Q9BWT1 371 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-219ENST00000556413 RAB6BQ9NRW1 208 aa9.01□□□□□ -0.97
SCFD1-219ENST00000556413 SPATA31C2B4DYI2 1134 aa9□□□□□ -0.97
SCFD1-219ENST00000556413 GPR25O00155 361 aa9□□□□□ -0.97
SCFD1-219ENST00000556413 GNRH1P01148 92 aa9□□□□□ -0.97
SCFD1-219ENST00000556413 GAS2L1Q99501 681 aaPredicted RBP9□□□□□ -0.97
SCFD1-219ENST00000556413 RNF225M0QZC1 329 aaPredicted RBP8.99□□□□□ -0.97
SCFD1-219ENST00000556413 IL2RAP01589 272 aa8.99□□□□□ -0.97
SCFD1-219ENST00000556413 RASSF7Q02833 373 aa8.99□□□□□ -0.97
SCFD1-219ENST00000556413 IRF5Q13568 498 aa8.99□□□□□ -0.97
SCFD1-219ENST00000556413 WDR44Q5JSH3 913 aa8.99□□□□□ -0.97
SCFD1-219ENST00000556413 CNKSR1Q969H4 720 aa8.99□□□□□ -0.97
SCFD1-219ENST00000556413 ESYT1Q9BSJ8 1104 aa8.99□□□□□ -0.97
SCFD1-219ENST00000556413 H7C1W4 665 aa8.98□□□□□ -0.97
SCFD1-219ENST00000556413 TSGA10IPQ3SY00 556 aa8.98□□□□□ -0.97
SCFD1-219ENST00000556413 FOXR1Q6PIV2 292 aa8.98□□□□□ -0.97
SCFD1-219ENST00000556413 TAS1R3Q7RTX0 852 aa8.98□□□□□ -0.97
SCFD1-219ENST00000556413 GTPBP3Q969Y2 492 aaKnown RBP8.98□□□□□ -0.97
SCFD1-219ENST00000556413 WASLO00401 505 aaPredicted RBP8.97□□□□□ -0.97
SCFD1-219ENST00000556413 GDF11O95390 407 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 MYCP01106 439 aaPredicted RBP8.97□□□□□ -0.97
SCFD1-219ENST00000556413 CELA2BP08218 269 aaPredicted RBP8.97□□□□□ -0.97
SCFD1-219ENST00000556413 CENPCQ03188 943 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 PHTF2Q8N3S3 785 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 TMEM151AQ8N4L1 468 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 KCTD17Q8N5Z5 321 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 TIMMDC1Q9NPL8 285 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 MBIPQ9NS73 344 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 HRH3Q9Y5N1 445 aa8.97□□□□□ -0.97
SCFD1-219ENST00000556413 EIF4G2P78344 907 aaKnown RBP eCLIP8.96□□□□□ -0.98
SCFD1-219ENST00000556413 PRM3Q9NNZ6 103 aa8.96□□□□□ -0.98
SCFD1-219ENST00000556413 F11P03951 625 aa8.95□□□□□ -0.98
SCFD1-219ENST00000556413 MARSP56192 900 aaKnown RBP8.95□□□□□ -0.98
SCFD1-219ENST00000556413 XAGE2Q96GT9 111 aa8.95□□□□□ -0.98
SCFD1-219ENST00000556413 IGF1RP08069 1367 aa8.95□□□□□ -0.98
SCFD1-219ENST00000556413 MAP3K10Q02779 954 aa8.94□□□□□ -0.98
SCFD1-219ENST00000556413 DOLKQ9UPQ8 538 aa8.94□□□□□ -0.98
SCFD1-219ENST00000556413 IRS1P35568 1242 aa8.93□□□□□ -0.98
SCFD1-219ENST00000556413 VAC14Q08AM6 782 aa8.93□□□□□ -0.98
SCFD1-219ENST00000556413 USP4Q13107 963 aa8.93□□□□□ -0.98
SCFD1-219ENST00000556413 SLFNL1Q499Z3 407 aa8.93□□□□□ -0.98
SCFD1-219ENST00000556413 TRERF1Q96PN7 1200 aa8.93□□□□□ -0.98
SCFD1-219ENST00000556413 ZSCAN10Q96SZ4 725 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-219ENST00000556413 FHDC1Q9C0D6 1143 aaPredicted RBP8.93□□□□□ -0.98
SCFD1-219ENST00000556413 NUCKS1Q9H1E3 243 aaKnown RBP8.93□□□□□ -0.98
SCFD1-219ENST00000556413 GDPD2Q9HCC8 539 aa8.93□□□□□ -0.98
SCFD1-219ENST00000556413 THBS1P07996 1170 aa8.92□□□□□ -0.98
SCFD1-219ENST00000556413 PHKA2P46019 1235 aa8.92□□□□□ -0.98
SCFD1-219ENST00000556413 RNF135Q8IUD6 432 aa8.92□□□□□ -0.98
SCFD1-219ENST00000556413 CHIC2Q9UKJ5 165 aa8.92□□□□□ -0.98
SCFD1-219ENST00000556413 STAU1O95793 577 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms