RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 CDC14CA4D256 554 aa9.79□□□□□ -0.84
SCFD1-217ENST00000555953 SCTRP47872 440 aa9.79□□□□□ -0.84
SCFD1-217ENST00000555953 RNF144AP50876 292 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-217ENST00000555953 RNFT1Q5M7Z0 435 aa9.79□□□□□ -0.84
SCFD1-217ENST00000555953 TRIM52Q96A61 297 aa9.79□□□□□ -0.84
SCFD1-217ENST00000555953 APBB1O00213 710 aa9.78□□□□□ -0.84
SCFD1-217ENST00000555953 ZNF330Q9Y3S2 320 aaPredicted RBP9.78□□□□□ -0.84
SCFD1-217ENST00000555953 PCDHB11Q9Y5F2 797 aa9.78□□□□□ -0.84
SCFD1-217ENST00000555953 A0A1W2PRU2 124 aa9.77□□□□□ -0.85
SCFD1-217ENST00000555953 MEN1O00255 615 aa9.77□□□□□ -0.85
SCFD1-217ENST00000555953 RHOQP17081 205 aa9.77□□□□□ -0.85
SCFD1-217ENST00000555953 SV2AQ7L0J3 742 aa9.77□□□□□ -0.85
SCFD1-217ENST00000555953 PRICKLE2Q7Z3G6 844 aa9.77□□□□□ -0.85
SCFD1-217ENST00000555953 ZNF592Q92610 1267 aa9.76□□□□□ -0.85
SCFD1-217ENST00000555953 CUEDC1Q9NWM3 386 aaPredicted RBP9.76□□□□□ -0.85
SCFD1-217ENST00000555953 TBC1D2BQ9UPU7 963 aa9.76□□□□□ -0.85
SCFD1-217ENST00000555953 OSBPL3Q9H4L5 887 aa9.75□□□□□ -0.85
SCFD1-217ENST00000555953 TRAK2O60296 914 aa9.74□□□□□ -0.85
SCFD1-217ENST00000555953 GPC1P35052 558 aa9.74□□□□□ -0.85
SCFD1-217ENST00000555953 CYP2U1Q7Z449 544 aa9.74□□□□□ -0.85
SCFD1-217ENST00000555953 CLN3Q13286 438 aa9.72□□□□□ -0.85
SCFD1-217ENST00000555953 IRF5Q13568 498 aa9.72□□□□□ -0.85
SCFD1-217ENST00000555953 CCDC85AQ96PX6 553 aaPredicted RBP9.72□□□□□ -0.85
SCFD1-217ENST00000555953 ARHGEF10LQ9HCE6 1279 aa9.72□□□□□ -0.85
SCFD1-217ENST00000555953 CEP126Q9P2H0 1117 aa9.72□□□□□ -0.85
SCFD1-217ENST00000555953 NLRP3Q96P20 1036 aa9.71□□□□□ -0.86
SCFD1-217ENST00000555953 CDCA7Q9BWT1 371 aaPredicted RBP9.71□□□□□ -0.86
SCFD1-217ENST00000555953 POU4F2Q12837 409 aa9.7□□□□□ -0.86
SCFD1-217ENST00000555953 ZNF385CQ66K41 422 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-217ENST00000555953 WHAMMQ8TF30 809 aa9.7□□□□□ -0.86
SCFD1-217ENST00000555953 GRIP2Q9C0E4 1043 aa9.7□□□□□ -0.86
SCFD1-217ENST00000555953 SLURP2P0DP57 97 aa9.69□□□□□ -0.86
SCFD1-217ENST00000555953 GAS6Q14393 721 aa9.69□□□□□ -0.86
SCFD1-217ENST00000555953 SLC27A3Q5K4L6 730 aa9.69□□□□□ -0.86
SCFD1-217ENST00000555953 ZNF837Q96EG3 531 aaPredicted RBP9.69□□□□□ -0.86
SCFD1-217ENST00000555953 ESF1Q9H501 851 aaKnown RBP9.69□□□□□ -0.86
SCFD1-217ENST00000555953 RAB6BQ9NRW1 208 aa9.69□□□□□ -0.86
SCFD1-217ENST00000555953 TSGA10IPQ3SY00 556 aa9.67□□□□□ -0.86
SCFD1-217ENST00000555953 NBPF10Q6P3W6 841 aaKnown RBP9.67□□□□□ -0.86
SCFD1-217ENST00000555953 TRIM22Q8IYM9 498 aa9.67□□□□□ -0.86
SCFD1-217ENST00000555953 NBPF15Q8N660 670 aa9.67□□□□□ -0.86
SCFD1-217ENST00000555953 PRM3Q9NNZ6 103 aa9.67□□□□□ -0.86
SCFD1-217ENST00000555953 DYRK1BQ9Y463 629 aa9.67□□□□□ -0.86
SCFD1-217ENST00000555953 GNRH1P01148 92 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 IL2RAP01589 272 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 PRKCSHP14314 528 aaPredicted RBP9.66□□□□□ -0.86
SCFD1-217ENST00000555953 EIF4G2P78344 907 aaKnown RBP eCLIP9.66□□□□□ -0.86
SCFD1-217ENST00000555953 DBN1Q16643 649 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 RIPOR1Q6ZS17 1223 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 PHTF2Q8N3S3 785 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 SVOPQ8N4V2 548 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 ADAMTS8Q9UP79 889 aa9.66□□□□□ -0.86
SCFD1-217ENST00000555953 SPATA31C2B4DYI2 1134 aa9.65□□□□□ -0.86
SCFD1-217ENST00000555953 ADAMTS2O95450 1211 aa9.65□□□□□ -0.86
SCFD1-217ENST00000555953 MYCP01106 439 aaPredicted RBP9.65□□□□□ -0.86
SCFD1-217ENST00000555953 GSK3AP49840 483 aa9.65□□□□□ -0.86
SCFD1-217ENST00000555953 CNKSR1Q969H4 720 aa9.65□□□□□ -0.86
SCFD1-217ENST00000555953 GDPD2Q9HCC8 539 aa9.65□□□□□ -0.86
SCFD1-217ENST00000555953 GPR25O00155 361 aa9.64□□□□□ -0.87
SCFD1-217ENST00000555953 VAC14Q08AM6 782 aa9.64□□□□□ -0.87
SCFD1-217ENST00000555953 GAS2L1Q99501 681 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-217ENST00000555953 ESYT1Q9BSJ8 1104 aa9.64□□□□□ -0.87
SCFD1-217ENST00000555953 WASLO00401 505 aaPredicted RBP9.63□□□□□ -0.87
SCFD1-217ENST00000555953 ARHGEF15O94989 841 aa9.63□□□□□ -0.87
SCFD1-217ENST00000555953 CENPCQ03188 943 aa9.63□□□□□ -0.87
SCFD1-217ENST00000555953 SRSF11Q05519 484 aaKnown RBP9.63□□□□□ -0.87
SCFD1-217ENST00000555953 KCNMA1Q12791 1236 aa9.63□□□□□ -0.87
SCFD1-217ENST00000555953 GMCL1Q96IK5 515 aa9.63□□□□□ -0.87
SCFD1-217ENST00000555953 DOLKQ9UPQ8 538 aa9.63□□□□□ -0.87
SCFD1-217ENST00000555953 HRH3Q9Y5N1 445 aa9.63□□□□□ -0.87
SCFD1-217ENST00000555953 ABL2P42684 1182 aa9.62□□□□□ -0.87
SCFD1-217ENST00000555953 WDR44Q5JSH3 913 aa9.62□□□□□ -0.87
SCFD1-217ENST00000555953 TAS1R3Q7RTX0 852 aa9.62□□□□□ -0.87
SCFD1-217ENST00000555953 RNF135Q8IUD6 432 aa9.62□□□□□ -0.87
SCFD1-217ENST00000555953 TIMMDC1Q9NPL8 285 aa9.62□□□□□ -0.87
SCFD1-217ENST00000555953 MCM6Q14566 821 aa9.61□□□□□ -0.87
SCFD1-217ENST00000555953 SLFNL1Q499Z3 407 aa9.61□□□□□ -0.87
SCFD1-217ENST00000555953 LYPD4Q6UWN0 246 aa9.61□□□□□ -0.87
SCFD1-217ENST00000555953 GTPBP3Q969Y2 492 aaKnown RBP9.61□□□□□ -0.87
SCFD1-217ENST00000555953 XAGE2Q96GT9 111 aa9.61□□□□□ -0.87
SCFD1-217ENST00000555953 H7C1W4 665 aa9.6□□□□□ -0.87
SCFD1-217ENST00000555953 STAU1O95793 577 aaKnown RBP9.6□□□□□ -0.87
SCFD1-217ENST00000555953 FHDC1Q9C0D6 1143 aaPredicted RBP9.6□□□□□ -0.87
SCFD1-217ENST00000555953 CHIC2Q9UKJ5 165 aa9.6□□□□□ -0.87
SCFD1-217ENST00000555953 OXLD1Q5BKU9 147 aa9.59□□□□□ -0.87
SCFD1-217ENST00000555953 FOXR1Q6PIV2 292 aa9.59□□□□□ -0.87
SCFD1-217ENST00000555953 MBIPQ9NS73 344 aa9.59□□□□□ -0.87
SCFD1-217ENST00000555953 F11P03951 625 aa9.58□□□□□ -0.88
SCFD1-217ENST00000555953 PHKA2P46019 1235 aa9.58□□□□□ -0.88
SCFD1-217ENST00000555953 USP4Q13107 963 aa9.58□□□□□ -0.88
SCFD1-217ENST00000555953 ZSCAN10Q96SZ4 725 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-217ENST00000555953 ETNK1Q9HBU6 452 aa9.58□□□□□ -0.88
SCFD1-217ENST00000555953 THBS1P07996 1170 aa9.57□□□□□ -0.88
SCFD1-217ENST00000555953 CELA2BP08218 269 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-217ENST00000555953 ESCO1Q5FWF5 840 aa9.57□□□□□ -0.88
SCFD1-217ENST00000555953 NUCKS1Q9H1E3 243 aaKnown RBP9.57□□□□□ -0.88
SCFD1-217ENST00000555953 IGF1RP08069 1367 aa9.57□□□□□ -0.88
SCFD1-217ENST00000555953 RASSF7Q02833 373 aa9.56□□□□□ -0.88
SCFD1-217ENST00000555953 WASHC4Q2M389 1173 aa9.56□□□□□ -0.88
SCFD1-217ENST00000555953 GPAMQ9HCL2 828 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms