RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 RXRBP28702 533 aa16.48■□□□□ 0.23
SHMT2-221ENST00000555773 FAM98CQ17RN3 349 aaKnown RBP16.48■□□□□ 0.23
SHMT2-221ENST00000555773 CCDC146Q8IYE0 955 aa16.48■□□□□ 0.23
SHMT2-221ENST00000555773 ZCRB1Q8TBF4 217 aaKnown RBP16.48■□□□□ 0.23
SHMT2-221ENST00000555773 FAM208AQ9UK61 1670 aaKnown RBP16.48■□□□□ 0.23
SHMT2-221ENST00000555773 RGPD1P0DJD0 1748 aa16.48■□□□□ 0.23
SHMT2-221ENST00000555773 NRAPQ86VF7 1730 aa16.48■□□□□ 0.23
SHMT2-221ENST00000555773 NCBP3Q53F19 620 aaKnown RBP16.47■□□□□ 0.23
SHMT2-221ENST00000555773 NGEFQ8N5V2 710 aa16.47■□□□□ 0.23
SHMT2-221ENST00000555773 GAS2L2Q8NHY3 880 aa16.47■□□□□ 0.23
SHMT2-221ENST00000555773 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.46■□□□□ 0.23
SHMT2-221ENST00000555773 MTHFSDQ2M296 383 aaKnown RBP16.46■□□□□ 0.23
SHMT2-221ENST00000555773 DISP2A7MBM2 1401 aa16.45■□□□□ 0.22
SHMT2-221ENST00000555773 APAF1O14727 1248 aa16.45■□□□□ 0.22
SHMT2-221ENST00000555773 NFE2L2Q16236 605 aa16.45■□□□□ 0.22
SHMT2-221ENST00000555773 DDB1Q16531 1140 aa16.45■□□□□ 0.22
SHMT2-221ENST00000555773 POTEAQ6S8J7 498 aa16.45■□□□□ 0.22
SHMT2-221ENST00000555773 OVOS2A0A0G2JMS6 1433 aa16.45■□□□□ 0.22
SHMT2-221ENST00000555773 TMPOP42166 694 aaKnown RBP16.44■□□□□ 0.22
SHMT2-221ENST00000555773 HTATSF1O43719 755 aaKnown RBP16.43■□□□□ 0.22
SHMT2-221ENST00000555773 AKAP4Q5JQC9 854 aa16.43■□□□□ 0.22
SHMT2-221ENST00000555773 C1orf141Q5JVX7 400 aa16.43■□□□□ 0.22
SHMT2-221ENST00000555773 ZNF530Q6P9A1 599 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-221ENST00000555773 SEPT12Q8IYM1 358 aa16.43■□□□□ 0.22
SHMT2-221ENST00000555773 IFNL2Q8IZJ0 200 aa16.43■□□□□ 0.22
SHMT2-221ENST00000555773 MEGF6O75095 1541 aa16.43■□□□□ 0.22
SHMT2-221ENST00000555773 A0A0G2JS52 829 aa16.42■□□□□ 0.22
SHMT2-221ENST00000555773 HSP90AB1P08238 724 aaKnown RBP16.42■□□□□ 0.22
SHMT2-221ENST00000555773 RIPK4P57078 832 aa16.42■□□□□ 0.22
SHMT2-221ENST00000555773 MYT1Q01538 1121 aa16.42■□□□□ 0.22
SHMT2-221ENST00000555773 PCDH11XQ9BZA7 1347 aa16.42■□□□□ 0.22
SHMT2-221ENST00000555773 PCDH11YQ9BZA8 1340 aa16.42■□□□□ 0.22
SHMT2-221ENST00000555773 GNAT3A8MTJ3 354 aa16.41■□□□□ 0.22
SHMT2-221ENST00000555773 LMOD3Q0VAK6 560 aa16.41■□□□□ 0.22
SHMT2-221ENST00000555773 PDE3BQ13370 1112 aa16.41■□□□□ 0.22
SHMT2-221ENST00000555773 CYP27B1O15528 508 aa16.4■□□□□ 0.22
SHMT2-221ENST00000555773 PHKG2P15735 406 aa16.4■□□□□ 0.22
SHMT2-221ENST00000555773 NKX1-1Q15270 411 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-221ENST00000555773 CCDC27Q2M243 656 aa16.4■□□□□ 0.22
SHMT2-221ENST00000555773 DDX54Q8TDD1 881 aaKnown RBP16.4■□□□□ 0.22
SHMT2-221ENST00000555773 RGPD2P0DJD1 1756 aa16.39■□□□□ 0.21
SHMT2-221ENST00000555773 NEUROD2Q15784 382 aa16.39■□□□□ 0.21
SHMT2-221ENST00000555773 RTF1Q92541 710 aaKnown RBP16.39■□□□□ 0.21
SHMT2-221ENST00000555773 GLI3P10071 1580 aa16.38■□□□□ 0.21
SHMT2-221ENST00000555773 DCAF5Q96JK2 942 aa16.38■□□□□ 0.21
SHMT2-221ENST00000555773 RRP7AQ9Y3A4 280 aaKnown RBP16.38■□□□□ 0.21
SHMT2-221ENST00000555773 MARCH10Q8NA82 808 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-221ENST00000555773 MAP3K5Q99683 1374 aa16.37■□□□□ 0.21
SHMT2-221ENST00000555773 TNS2Q63HR2 1409 aa16.36■□□□□ 0.21
SHMT2-221ENST00000555773 HNRNPUQ00839 825 aaKnown RBP eCLIP16.36■□□□□ 0.21
SHMT2-221ENST00000555773 TRIM35Q9UPQ4 493 aa16.36■□□□□ 0.21
SHMT2-221ENST00000555773 KRT27Q7Z3Y8 459 aa16.35■□□□□ 0.21
SHMT2-221ENST00000555773 WWC1Q8IX03 1113 aa16.35■□□□□ 0.21
SHMT2-221ENST00000555773 IL17REQ8NFR9 667 aa16.35■□□□□ 0.21
SHMT2-221ENST00000555773 RNMTO43148 476 aaKnown RBP16.34■□□□□ 0.21
SHMT2-221ENST00000555773 CALD1Q05682 793 aaKnown RBP16.34■□□□□ 0.21
SHMT2-221ENST00000555773 MPRIPQ6WCQ1 1025 aa16.34■□□□□ 0.21
SHMT2-221ENST00000555773 ERVV-2B6SEH9 535 aa16.33■□□□□ 0.2
SHMT2-221ENST00000555773 WDR63Q8IWG1 891 aa16.33■□□□□ 0.2
SHMT2-221ENST00000555773 LGR6Q9HBX8 967 aa16.33■□□□□ 0.2
SHMT2-221ENST00000555773 SALL2Q9Y467 1007 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-221ENST00000555773 PARP4Q9UKK3 1724 aaKnown RBP16.33■□□□□ 0.2
SHMT2-221ENST00000555773 MCM10Q7L590 875 aa16.32■□□□□ 0.2
SHMT2-221ENST00000555773 THSD7AQ9UPZ6 1657 aa16.31■□□□□ 0.2
SHMT2-221ENST00000555773 BCL9O00512 1426 aa16.31■□□□□ 0.2
SHMT2-221ENST00000555773 CEMIPQ8WUJ3 1361 aa16.31■□□□□ 0.2
SHMT2-221ENST00000555773 DCTN1Q14203 1278 aa16.31■□□□□ 0.2
SHMT2-221ENST00000555773 FAM196AQ6ZSG2 479 aa16.31■□□□□ 0.2
SHMT2-221ENST00000555773 ZNF521Q96K83 1311 aa16.3■□□□□ 0.2
SHMT2-221ENST00000555773 SENP3-EIF4A1A0A087X0R7 540 aa16.3■□□□□ 0.2
SHMT2-221ENST00000555773 CABP4P57796 275 aa16.3■□□□□ 0.2
SHMT2-221ENST00000555773 TEFQ10587 303 aa16.3■□□□□ 0.2
SHMT2-221ENST00000555773 PKD1L3Q7Z443 1732 aa16.3■□□□□ 0.2
SHMT2-221ENST00000555773 IL16Q14005 1332 aa16.29■□□□□ 0.2
SHMT2-221ENST00000555773 ZBED9Q6R2W3 1325 aa16.29■□□□□ 0.2
SHMT2-221ENST00000555773 TAF7Q15545 349 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-221ENST00000555773 SLC52A2Q9HAB3 445 aa16.29■□□□□ 0.2
SHMT2-221ENST00000555773 BABAM1Q9NWV8 329 aa16.29■□□□□ 0.2
SHMT2-221ENST00000555773 RGS12O14924 1447 aa16.28■□□□□ 0.2
SHMT2-221ENST00000555773 GOLGA2Q08379 1002 aa16.28■□□□□ 0.2
SHMT2-221ENST00000555773 PRIM1P49642 420 aaKnown RBP16.27■□□□□ 0.2
SHMT2-221ENST00000555773 NFATC2IPQ8NCF5 419 aa16.27■□□□□ 0.2
SHMT2-221ENST00000555773 CFAP44Q96MT7 982 aa16.27■□□□□ 0.2
SHMT2-221ENST00000555773 YTHDC1Q96MU7 727 aaKnown RBP16.27■□□□□ 0.2
SHMT2-221ENST00000555773 THUMPD2Q9BTF0 503 aaKnown RBP16.27■□□□□ 0.2
SHMT2-221ENST00000555773 KDM6AO15550 1401 aaPredicted RBP16.27■□□□□ 0.19
SHMT2-221ENST00000555773 LRRC37A3O60309 1634 aa16.27■□□□□ 0.19
SHMT2-221ENST00000555773 GNAI1P63096 354 aa16.26■□□□□ 0.19
SHMT2-221ENST00000555773 IFT57Q9NWB7 429 aa16.26■□□□□ 0.19
SHMT2-221ENST00000555773 TMOD3Q9NYL9 352 aa16.26■□□□□ 0.19
SHMT2-221ENST00000555773 WNK3Q9BYP7 1800 aa16.25■□□□□ 0.19
SHMT2-221ENST00000555773 CHL1O00533 1208 aa16.25■□□□□ 0.19
SHMT2-221ENST00000555773 ZNF853P0CG23 659 aa16.25■□□□□ 0.19
SHMT2-221ENST00000555773 FAM182BQ5T319 152 aa16.25■□□□□ 0.19
SHMT2-221ENST00000555773 E9PSI1 815 aa16.24■□□□□ 0.19
SHMT2-221ENST00000555773 PIGBQ92521 554 aa16.24■□□□□ 0.19
SHMT2-221ENST00000555773 SYTL4Q96C24 671 aaPredicted RBP16.24■□□□□ 0.19
SHMT2-221ENST00000555773 ACSBG1Q96GR2 724 aa16.24■□□□□ 0.19
SHMT2-221ENST00000555773 BTBD11A6QL63 1104 aa16.23■□□□□ 0.19
SHMT2-221ENST00000555773 BCL11BQ9C0K0 894 aaPredicted RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms