RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 PROM2Q8N271 834 aa16.28■□□□□ 0.2
VRK1-204ENST00000555351 EMILIN1Q9Y6C2 1016 aa16.28■□□□□ 0.2
VRK1-204ENST00000555351 BTAF1O14981 1849 aa16.28■□□□□ 0.2
VRK1-204ENST00000555351 SRCAPQ6ZRS2 3230 aa16.28■□□□□ 0.2
VRK1-204ENST00000555351 DDX54Q8TDD1 881 aaKnown RBP16.27■□□□□ 0.2
VRK1-204ENST00000555351 POLKQ9UBT6 870 aa16.27■□□□□ 0.2
VRK1-204ENST00000555351 TATP17735 454 aaPredicted RBP16.26■□□□□ 0.19
VRK1-204ENST00000555351 ACSBG1Q96GR2 724 aa16.25■□□□□ 0.19
VRK1-204ENST00000555351 PKD1L3Q7Z443 1732 aa16.25■□□□□ 0.19
VRK1-204ENST00000555351 DOT1LQ8TEK3 1739 aa16.24■□□□□ 0.19
VRK1-204ENST00000555351 KIF7Q2M1P5 1343 aa16.23■□□□□ 0.19
VRK1-204ENST00000555351 PCDH11XQ9BZA7 1347 aa16.23■□□□□ 0.19
VRK1-204ENST00000555351 PCDH11YQ9BZA8 1340 aa16.23■□□□□ 0.19
VRK1-204ENST00000555351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.23■□□□□ 0.193e-6■■■□□ 16.4
VRK1-204ENST00000555351 KNSTRNQ9Y448 316 aa16.23■□□□□ 0.19
VRK1-204ENST00000555351 CASZ1Q86V15 1759 aa16.23■□□□□ 0.19
VRK1-204ENST00000555351 PAPPAQ13219 1627 aa16.23■□□□□ 0.19
VRK1-204ENST00000555351 PPM1GO15355 546 aaPredicted RBP16.22■□□□□ 0.19
VRK1-204ENST00000555351 SLC27A3Q5K4L6 730 aa16.22■□□□□ 0.19
VRK1-204ENST00000555351 USHBP1Q8N6Y0 703 aa16.22■□□□□ 0.19
VRK1-204ENST00000555351 ANO8Q9HCE9 1232 aaPredicted RBP16.22■□□□□ 0.19
VRK1-204ENST00000555351 HMGB2P26583 209 aaKnown RBP16.21■□□□□ 0.19
VRK1-204ENST00000555351 SLC15A2Q16348 729 aa16.21■□□□□ 0.19
VRK1-204ENST00000555351 SPON1Q9HCB6 807 aa16.21■□□□□ 0.19
VRK1-204ENST00000555351 STK32BQ9NY57 414 aa16.21■□□□□ 0.19
VRK1-204ENST00000555351 LY75O60449 1722 aa16.2■□□□□ 0.18
VRK1-204ENST00000555351 PRIM1P49642 420 aaKnown RBP16.2■□□□□ 0.18
VRK1-204ENST00000555351 EYA1Q99502 592 aa16.2■□□□□ 0.18
VRK1-204ENST00000555351 MORC1Q86VD1 984 aa16.19■□□□□ 0.18
VRK1-204ENST00000555351 SPG7Q9UQ90 795 aa16.19■□□□□ 0.18
VRK1-204ENST00000555351 EIF4A2Q14240 407 aaKnown RBP16.18■□□□□ 0.18
VRK1-204ENST00000555351 NKX1-1Q15270 411 aaPredicted RBP16.18■□□□□ 0.18
VRK1-204ENST00000555351 AMER1Q5JTC6 1135 aaPredicted RBP16.18■□□□□ 0.18
VRK1-204ENST00000555351 IGSF1Q8N6C5 1336 aa16.18■□□□□ 0.18
VRK1-204ENST00000555351 KAT6BQ8WYB5 2073 aa16.17■□□□□ 0.18
VRK1-204ENST00000555351 QSER1Q2KHR3 1735 aa16.17■□□□□ 0.18
VRK1-204ENST00000555351 CYP27B1O15528 508 aa16.17■□□□□ 0.18
VRK1-204ENST00000555351 TNNT2P45379 298 aaPredicted RBP16.17■□□□□ 0.18
VRK1-204ENST00000555351 SYTL4Q96C24 671 aaPredicted RBP16.17■□□□□ 0.18
VRK1-204ENST00000555351 NPC1L1Q9UHC9 1359 aa16.16■□□□□ 0.18
VRK1-204ENST00000555351 PER1O15534 1290 aaPredicted RBP16.16■□□□□ 0.18
VRK1-204ENST00000555351 LRRC4BQ9NT99 713 aa16.16■□□□□ 0.18
VRK1-204ENST00000555351 AKT1S1Q96B36 256 aa16.14■□□□□ 0.17
VRK1-204ENST00000555351 IFNL2Q8IZJ0 200 aa16.13■□□□□ 0.17
VRK1-204ENST00000555351 TOGARAM1Q9Y4F4 1720 aa16.13■□□□□ 0.17
VRK1-204ENST00000555351 SLC16A10Q8TF71 515 aa16.12■□□□□ 0.17
VRK1-204ENST00000555351 SMARCC1Q92922 1105 aaPredicted RBP16.12■□□□□ 0.17
VRK1-204ENST00000555351 MTFR1LQ9H019 292 aa16.12■□□□□ 0.17
VRK1-204ENST00000555351 ITGB4P16144 1822 aa16.12■□□□□ 0.17
VRK1-204ENST00000555351 KDRP35968 1356 aa16.11■□□□□ 0.17
VRK1-204ENST00000555351 PHKG2P15735 406 aa16.1■□□□□ 0.17
VRK1-204ENST00000555351 ZNF827Q17R98 1081 aa16.1■□□□□ 0.17
VRK1-204ENST00000555351 AMOTQ4VCS5 1084 aa16.1■□□□□ 0.17
VRK1-204ENST00000555351 PDGFDQ9GZP0 370 aaPredicted RBP16.1■□□□□ 0.17
VRK1-204ENST00000555351 PPP1R1BQ9UD71 204 aaPredicted RBP16.1■□□□□ 0.17
VRK1-204ENST00000555351 CCNL1Q9UK58 526 aaPredicted RBP16.1■□□□□ 0.17
VRK1-204ENST00000555351 HSP90AB1P08238 724 aaKnown RBP16.09■□□□□ 0.17
VRK1-204ENST00000555351 PTGER2P43116 358 aa16.09■□□□□ 0.17
VRK1-204ENST00000555351 PLEKHO1Q53GL0 409 aaPredicted RBP16.09■□□□□ 0.17
VRK1-204ENST00000555351 COL24A1Q17RW2 1714 aa16.08■□□□□ 0.17
VRK1-204ENST00000555351 ZBTB7AO95365 584 aa16.08■□□□□ 0.16
VRK1-204ENST00000555351 IL13P35225 146 aa16.08■□□□□ 0.16
VRK1-204ENST00000555351 MPRIPQ6WCQ1 1025 aa16.08■□□□□ 0.16
VRK1-204ENST00000555351 SGIP1Q9BQI5 828 aa16.08■□□□□ 0.16
VRK1-204ENST00000555351 PALLDQ8WX93 1383 aa16.08■□□□□ 0.16
VRK1-204ENST00000555351 C5P01031 1676 aa16.08■□□□□ 0.16
VRK1-204ENST00000555351 ERVV-2B6SEH9 535 aa16.06■□□□□ 0.16
VRK1-204ENST00000555351 MTHFSP49914 203 aa16.06■□□□□ 0.16
VRK1-204ENST00000555351 PIGBQ92521 554 aa16.06■□□□□ 0.16
VRK1-204ENST00000555351 DCAF5Q96JK2 942 aa16.06■□□□□ 0.16
VRK1-204ENST00000555351 TMOD3Q9NYL9 352 aa16.06■□□□□ 0.16
VRK1-204ENST00000555351 TFCP2L1Q9NZI6 479 aa16.06■□□□□ 0.16
VRK1-204ENST00000555351 TAF1LQ8IZX4 1826 aa16.05■□□□□ 0.16
VRK1-204ENST00000555351 TUBGCP6Q96RT7 1819 aa16.05■□□□□ 0.16
VRK1-204ENST00000555351 PNPLA7Q6ZV29 1317 aa16.05■□□□□ 0.16
VRK1-204ENST00000555351 ZNF831Q5JPB2 1677 aa16.05■□□□□ 0.16
VRK1-204ENST00000555351 MAP3K5Q99683 1374 aa16.04■□□□□ 0.16
VRK1-204ENST00000555351 FLAD1Q8NFF5 587 aa16.04■□□□□ 0.16
VRK1-204ENST00000555351 ATF5Q9Y2D1 282 aaPredicted RBP16.04■□□□□ 0.16
VRK1-204ENST00000555351 CC2D1BQ5T0F9 858 aaKnown RBP16.03■□□□□ 0.16
VRK1-204ENST00000555351 SULT6B1Q6IMI4 303 aa16.03■□□□□ 0.16
VRK1-204ENST00000555351 DIAPH1O60610 1272 aaKnown RBP16.02■□□□□ 0.16
VRK1-204ENST00000555351 KCNQ4P56696 695 aa16.02■□□□□ 0.16
VRK1-204ENST00000555351 ZNF530Q6P9A1 599 aaPredicted RBP16.02■□□□□ 0.16
VRK1-204ENST00000555351 AEBP1Q8IUX7 1158 aa16.02■□□□□ 0.16
VRK1-204ENST00000555351 C4BP0C0L5 1744 aa16.02■□□□□ 0.15
VRK1-204ENST00000555351 DCAF8L1A6NGE4 600 aa16.01■□□□□ 0.15
VRK1-204ENST00000555351 C1orf141Q5JVX7 400 aa16.01■□□□□ 0.15
VRK1-204ENST00000555351 ARXQ96QS3 562 aa16.01■□□□□ 0.15
VRK1-204ENST00000555351 LOC102724428A0A0B4J2F2 783 aa16■□□□□ 0.15
VRK1-204ENST00000555351 SIK1P57059 783 aa16■□□□□ 0.15
VRK1-204ENST00000555351 KDM6AO15550 1401 aaPredicted RBP16■□□□□ 0.15
VRK1-204ENST00000555351 COL3A1P02461 1466 aaPredicted RBP15.99■□□□□ 0.15
VRK1-204ENST00000555351 POLD1P28340 1107 aa15.99■□□□□ 0.15
VRK1-204ENST00000555351 ATG3Q9NT62 314 aa15.99■□□□□ 0.15
VRK1-204ENST00000555351 ASAP1Q9ULH1 1129 aa15.99■□□□□ 0.15
VRK1-204ENST00000555351 AKAP4Q5JQC9 854 aa15.98■□□□□ 0.15
VRK1-204ENST00000555351 COL23A1Q86Y22 540 aaPredicted RBP15.98■□□□□ 0.15
VRK1-204ENST00000555351 SYT17Q9BSW7 474 aa15.98■□□□□ 0.15
VRK1-204ENST00000555351 SCN11AQ9UI33 1791 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms