RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 C1orf115Q9H7X2 142 aa14.84□□□□□ -0.03
SHMT2-212ENST00000554467 ALDH1L2Q3SY69 923 aa14.84□□□□□ -0.03
SHMT2-212ENST00000554467 KRT28Q7Z3Y7 464 aa14.84□□□□□ -0.03
SHMT2-212ENST00000554467 TMEM94Q12767 1356 aa14.84□□□□□ -0.03
SHMT2-212ENST00000554467 IPO8O15397 1037 aaKnown RBP14.83□□□□□ -0.04
SHMT2-212ENST00000554467 GSE1Q14687 1217 aa14.83□□□□□ -0.04
SHMT2-212ENST00000554467 NBPF6Q5VWK0 638 aa14.83□□□□□ -0.04
SHMT2-212ENST00000554467 NBPF4Q96M43 638 aa14.83□□□□□ -0.04
SHMT2-212ENST00000554467 C19orf44Q9H6X5 657 aa14.83□□□□□ -0.04
SHMT2-212ENST00000554467 GCP02774 474 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 ATF3P18847 181 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 NECTIN2Q92692 538 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 CHL1O00533 1208 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 SLC4A3P48751 1232 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 ZC3H6P61129 1189 aaKnown RBP14.82□□□□□ -0.04
SHMT2-212ENST00000554467 TSPYL4Q9UJ04 414 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 DDX19BQ9UMR2 479 aa14.82□□□□□ -0.04
SHMT2-212ENST00000554467 KDRP35968 1356 aa14.81□□□□□ -0.04
SHMT2-212ENST00000554467 IP6K1Q92551 441 aa14.81□□□□□ -0.04
SHMT2-212ENST00000554467 PKNOX2Q96KN3 472 aa14.81□□□□□ -0.04
SHMT2-212ENST00000554467 CABLES1Q8TDN4 633 aa14.8□□□□□ -0.04
SHMT2-212ENST00000554467 PDZRN3Q9UPQ7 1066 aa14.8□□□□□ -0.04
SHMT2-212ENST00000554467 LTN1O94822 1766 aa14.8□□□□□ -0.04
SHMT2-212ENST00000554467 RWDD1Q9H446 243 aaPredicted RBP14.8□□□□□ -0.04
SHMT2-212ENST00000554467 C1orf167Q5SNV9 1468 aa14.79□□□□□ -0.04
SHMT2-212ENST00000554467 CRB1P82279 1406 aa14.79□□□□□ -0.04
SHMT2-212ENST00000554467 GAS2L2Q8NHY3 880 aa14.79□□□□□ -0.04
SHMT2-212ENST00000554467 AXIN2Q9Y2T1 843 aa14.79□□□□□ -0.04
SHMT2-212ENST00000554467 C8orf34Q49A92 452 aa14.79□□□□□ -0.04
SHMT2-212ENST00000554467 ZBTB40Q9NUA8 1239 aa14.79□□□□□ -0.04
SHMT2-212ENST00000554467 KDM4FA0A1W2PPD8 638 aa14.78□□□□□ -0.04
SHMT2-212ENST00000554467 DAXXQ9UER7 740 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-212ENST00000554467 GNAT3A8MTJ3 354 aa14.78□□□□□ -0.04
SHMT2-212ENST00000554467 IL17REQ8NFR9 667 aa14.78□□□□□ -0.04
SHMT2-212ENST00000554467 NWD1Q149M9 1564 aa14.78□□□□□ -0.04
SHMT2-212ENST00000554467 STRCP1A6NGW2 1772 aa14.78□□□□□ -0.04
SHMT2-212ENST00000554467 NFAT5O94916 1531 aa14.77□□□□□ -0.04
SHMT2-212ENST00000554467 KCNH5Q8NCM2 988 aa14.77□□□□□ -0.04
SHMT2-212ENST00000554467 FAM161AQ3B820 660 aa14.76□□□□□ -0.05
SHMT2-212ENST00000554467 ZNF428Q96B54 188 aa14.76□□□□□ -0.05
SHMT2-212ENST00000554467 NFKBIBQ15653 356 aa14.76□□□□□ -0.05
SHMT2-212ENST00000554467 ARHGEF25Q86VW2 580 aa14.76□□□□□ -0.05
SHMT2-212ENST00000554467 SLC4A2P04920 1241 aa14.75□□□□□ -0.05
SHMT2-212ENST00000554467 LGR6Q9HBX8 967 aa14.75□□□□□ -0.05
SHMT2-212ENST00000554467 RGPD2P0DJD1 1756 aa14.75□□□□□ -0.05
SHMT2-212ENST00000554467 G2E3Q7L622 706 aa14.75□□□□□ -0.05
SHMT2-212ENST00000554467 ANKRD24Q8TF21 1146 aa14.75□□□□□ -0.05
SHMT2-212ENST00000554467 ZBTB7BO15156 539 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-212ENST00000554467 MSH6P52701 1360 aa14.74□□□□□ -0.05
SHMT2-212ENST00000554467 F6X3S4 739 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 BRPF1P55201 1214 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-212ENST00000554467 AAMPQ13685 434 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 CHRNA2Q15822 529 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 MPRIPQ6WCQ1 1025 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 MAP3K5Q99683 1374 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 MST1RQ04912 1400 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 RTL1A6NKG5 1358 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 KIF24Q5T7B8 1368 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 SEC24BO95487 1268 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 ABCC4O15439 1325 aa14.73□□□□□ -0.05
SHMT2-212ENST00000554467 SLC4A10Q6U841 1118 aa14.72□□□□□ -0.05
SHMT2-212ENST00000554467 ZNF335Q9H4Z2 1342 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-212ENST00000554467 ZNF530Q6P9A1 599 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-212ENST00000554467 ARHGAP45Q92619 1136 aa14.72□□□□□ -0.05
SHMT2-212ENST00000554467 API5Q9BZZ5 524 aaKnown RBP14.72□□□□□ -0.05
SHMT2-212ENST00000554467 USP54Q70EL1 1684 aa14.71□□□□□ -0.05
SHMT2-212ENST00000554467 LNPKQ9C0E8 428 aa14.71□□□□□ -0.05
SHMT2-212ENST00000554467 KCNQ3O43525 872 aa14.7□□□□□ -0.06
SHMT2-212ENST00000554467 HDAC1Q13547 482 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-212ENST00000554467 CADPS2Q86UW7 1296 aa14.7□□□□□ -0.06
SHMT2-212ENST00000554467 SIRT2Q8IXJ6 389 aa14.7□□□□□ -0.06
SHMT2-212ENST00000554467 KIAA0232Q92628 1395 aa14.69□□□□□ -0.06
SHMT2-212ENST00000554467 TAF7Q15545 349 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-212ENST00000554467 NLRP2Q9NX02 1062 aa14.69□□□□□ -0.06
SHMT2-212ENST00000554467 USP19O94966 1318 aa14.69□□□□□ -0.06
SHMT2-212ENST00000554467 EIF2S2P20042 333 aaKnown RBP14.68□□□□□ -0.06
SHMT2-212ENST00000554467 TRPM3Q9HCF6 1732 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-212ENST00000554467 FAM43AQ8N2R8 423 aa14.68□□□□□ -0.06
SHMT2-212ENST00000554467 RGS12O14924 1447 aa14.68□□□□□ -0.06
SHMT2-212ENST00000554467 CSB-PGBD3P0DP91 1061 aa14.67□□□□□ -0.06
SHMT2-212ENST00000554467 ANKRD45Q5TZF3 282 aa14.67□□□□□ -0.06
SHMT2-212ENST00000554467 MEIS3Q99687 375 aa14.67□□□□□ -0.06
SHMT2-212ENST00000554467 PXDNQ92626 1479 aa14.67□□□□□ -0.06
SHMT2-212ENST00000554467 RGPD5Q99666 1765 aa14.67□□□□□ -0.06
SHMT2-212ENST00000554467 APBB1O00213 710 aa14.67□□□□□ -0.06
SHMT2-212ENST00000554467 HTATSF1O43719 755 aaKnown RBP14.67□□□□□ -0.06
SHMT2-212ENST00000554467 MED1Q15648 1581 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-212ENST00000554467 LMTK3Q96Q04 1460 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 SMC5Q8IY18 1101 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 STK31Q9BXU1 1019 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 ANXA1P04083 346 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 BRINP3Q76B58 766 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 SLIT3O75094 1523 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 NPHP3Q7Z494 1330 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 TEFQ10587 303 aa14.66□□□□□ -0.06
SHMT2-212ENST00000554467 PLEKHO1Q53GL0 409 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-212ENST00000554467 FKBP5Q13451 457 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-212ENST00000554467 ERBB3P21860 1342 aa14.65□□□□□ -0.06
SHMT2-212ENST00000554467 HAP1P54257 671 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-212ENST00000554467 C1orf141Q5JVX7 400 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 241.7 ms