RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 CABP2Q9NPB3 220 aa15.39■□□□□ 0.05
VPS29-208ENST00000550267 THRAP3Q9Y2W1 955 aaKnown RBP15.39■□□□□ 0.05
VPS29-208ENST00000550267 USP19O94966 1318 aa15.39■□□□□ 0.05
VPS29-208ENST00000550267 RAB3GAP2Q9H2M9 1393 aa15.38■□□□□ 0.05
VPS29-208ENST00000550267 PARP4Q9UKK3 1724 aaKnown RBP15.38■□□□□ 0.05
VPS29-208ENST00000550267 COL5A2P05997 1499 aaPredicted RBP15.38■□□□□ 0.05
VPS29-208ENST00000550267 PLEKHG3A1L390 1219 aa15.37■□□□□ 0.05
VPS29-208ENST00000550267 GCP02774 474 aa15.36■□□□□ 0.05
VPS29-208ENST00000550267 ANO8Q9HCE9 1232 aaPredicted RBP15.36■□□□□ 0.05
VPS29-208ENST00000550267 OVOS2A0A0G2JMS6 1433 aa15.35■□□□□ 0.05
VPS29-208ENST00000550267 OVOS2A0A0J9YW53 1432 aa15.35■□□□□ 0.05
VPS29-208ENST00000550267 OVOS2Q6IE36 1432 aa15.35■□□□□ 0.05
VPS29-208ENST00000550267 PEAK1Q9H792 1746 aa15.35■□□□□ 0.05
VPS29-208ENST00000550267 ZBTB7CA1YPR0 619 aa15.35■□□□□ 0.05
VPS29-208ENST00000550267 STAC3Q96MF2 364 aa15.35■□□□□ 0.05
VPS29-208ENST00000550267 CRB1P82279 1406 aa15.34■□□□□ 0.05
VPS29-208ENST00000550267 C11orf95C9JLR9 678 aaPredicted RBP15.34■□□□□ 0.05
VPS29-208ENST00000550267 DPY19L2Q6NUT2 758 aa15.34■□□□□ 0.05
VPS29-208ENST00000550267 NLRP13Q86W25 1043 aa15.34■□□□□ 0.05
VPS29-208ENST00000550267 LRRC37A3O60309 1634 aa15.33■□□□□ 0.04
VPS29-208ENST00000550267 PLSCR1O15162 318 aa15.33■□□□□ 0.04
VPS29-208ENST00000550267 PTF1AQ7RTS3 328 aa15.33■□□□□ 0.04
VPS29-208ENST00000550267 MARVELD3Q96A59 401 aa15.33■□□□□ 0.04
VPS29-208ENST00000550267 PDGFDQ9GZP0 370 aaPredicted RBP15.33■□□□□ 0.04
VPS29-208ENST00000550267 CASZ1Q86V15 1759 aa15.33■□□□□ 0.04
VPS29-208ENST00000550267 RGPD3A6NKT7 1758 aaPredicted RBP15.32■□□□□ 0.04
VPS29-208ENST00000550267 RGPD4Q7Z3J3 1758 aa15.32■□□□□ 0.04
VPS29-208ENST00000550267 DDB1Q16531 1140 aa15.32■□□□□ 0.04
VPS29-208ENST00000550267 PPIP5K1Q6PFW1 1433 aa15.32■□□□□ 0.04
VPS29-208ENST00000550267 ZBTB7AO95365 584 aa15.31■□□□□ 0.04
VPS29-208ENST00000550267 SRPK2P78362 688 aaKnown RBP15.3■□□□□ 0.04
VPS29-208ENST00000550267 BCL11BQ9C0K0 894 aaPredicted RBP15.3■□□□□ 0.04
VPS29-208ENST00000550267 BOLA1Q9Y3E2 137 aa15.3■□□□□ 0.04
VPS29-208ENST00000550267 SBF2Q86WG5 1849 aa15.29■□□□□ 0.04
VPS29-208ENST00000550267 MYOM1P52179 1685 aa15.29■□□□□ 0.04
VPS29-208ENST00000550267 AATKQ6ZMQ8 1374 aa15.29■□□□□ 0.04
VPS29-208ENST00000550267 TOM1L2Q6ZVM7 507 aa15.29■□□□□ 0.04
VPS29-208ENST00000550267 PTGER2P43116 358 aa15.28■□□□□ 0.04
VPS29-208ENST00000550267 MARCH10Q8NA82 808 aaPredicted RBP15.28■□□□□ 0.04
VPS29-208ENST00000550267 SLIT3O75094 1523 aa15.27■□□□□ 0.04
VPS29-208ENST00000550267 G3V3G9 751 aa15.27■□□□□ 0.04
VPS29-208ENST00000550267 NLRP6P59044 892 aa15.27■□□□□ 0.04
VPS29-208ENST00000550267 ZNF784Q8NCA9 323 aaPredicted RBP15.27■□□□□ 0.04
VPS29-208ENST00000550267 BRD4O60885 1362 aaPredicted RBP15.26■□□□□ 0.03
VPS29-208ENST00000550267 NBPF1Q3BBV0 1214 aa15.26■□□□□ 0.03
VPS29-208ENST00000550267 AXIN2Q9Y2T1 843 aa15.26■□□□□ 0.03
VPS29-208ENST00000550267 USP6P35125 1406 aa15.26■□□□□ 0.03
VPS29-208ENST00000550267 WDR17Q8IZU2 1322 aa15.25■□□□□ 0.03
VPS29-208ENST00000550267 WNK3Q9BYP7 1800 aa15.25■□□□□ 0.03
VPS29-208ENST00000550267 COL18A1P39060 1754 aa15.25■□□□□ 0.03
VPS29-208ENST00000550267 KIAA1210Q9ULL0 1709 aa15.25■□□□□ 0.03
VPS29-208ENST00000550267 CENPJQ9HC77 1338 aaPredicted RBP15.24■□□□□ 0.03
VPS29-208ENST00000550267 TXNRD1Q16881 649 aa15.24■□□□□ 0.03
VPS29-208ENST00000550267 FHDC1Q9C0D6 1143 aaPredicted RBP15.24■□□□□ 0.03
VPS29-208ENST00000550267 STK32BQ9NY57 414 aa15.24■□□□□ 0.03
VPS29-208ENST00000550267 CABP1Q9NZU7 370 aa15.24■□□□□ 0.03
VPS29-208ENST00000550267 BCL9O00512 1426 aa15.24■□□□□ 0.03
VPS29-208ENST00000550267 EMP3P54852 163 aa15.23■□□□□ 0.03
VPS29-208ENST00000550267 SLC15A2Q16348 729 aa15.23■□□□□ 0.03
VPS29-208ENST00000550267 CPSF1Q10570 1443 aaKnown RBP15.23■□□□□ 0.03
VPS29-208ENST00000550267 PIK3C2AO00443 1686 aa15.22■□□□□ 0.03
VPS29-208ENST00000550267 SYT17Q9BSW7 474 aa15.22■□□□□ 0.03
VPS29-208ENST00000550267 CDCA7Q9BWT1 371 aaPredicted RBP15.22■□□□□ 0.03
VPS29-208ENST00000550267 AKAP12Q02952 1782 aa15.21■□□□□ 0.03
VPS29-208ENST00000550267 QRICH2Q9H0J4 1663 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 CSB-PGBD3P0DP91 1061 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 ARHGEF25Q86VW2 580 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 SPNS2Q8IVW8 549 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 EFCAB3Q8N7B9 438 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 CARD10Q9BWT7 1032 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 MTFR1LQ9H019 292 aa15.2■□□□□ 0.02
VPS29-208ENST00000550267 SENP3-EIF4A1A0A087X0R7 540 aa15.19■□□□□ 0.02
VPS29-208ENST00000550267 EXOC5O00471 708 aa15.19■□□□□ 0.02
VPS29-208ENST00000550267 SOX12O15370 315 aa15.19■□□□□ 0.02
VPS29-208ENST00000550267 MMRN1Q13201 1228 aa15.17■□□□□ 0.02
VPS29-208ENST00000550267 TNS2Q63HR2 1409 aa15.17■□□□□ 0.02
VPS29-208ENST00000550267 TTC21BQ7Z4L5 1316 aa15.17■□□□□ 0.02
VPS29-208ENST00000550267 RGPD5Q99666 1765 aa15.16■□□□□ 0.02
VPS29-208ENST00000550267 C1QTNF8P60827 252 aa15.16■□□□□ 0.02
VPS29-208ENST00000550267 KCNH5Q8NCM2 988 aa15.16■□□□□ 0.02
VPS29-208ENST00000550267 ACSBG1Q96GR2 724 aa15.16■□□□□ 0.02
VPS29-208ENST00000550267 ARXQ96QS3 562 aa15.16■□□□□ 0.02
VPS29-208ENST00000550267 NHSQ6T4R5 1651 aa15.16■□□□□ 0.02
VPS29-208ENST00000550267 UTRNP46939 3433 aa15.14■□□□□ 0.01
VPS29-208ENST00000550267 PAPPAQ13219 1627 aa15.14■□□□□ 0.01
VPS29-208ENST00000550267 TRPM1Q7Z4N2 1603 aa15.14■□□□□ 0.01
VPS29-208ENST00000550267 CCDC7Q96M83 1385 aa15.14■□□□□ 0.01
VPS29-208ENST00000550267 NFAT5O94916 1531 aa15.14■□□□□ 0.01
VPS29-208ENST00000550267 HOXB3P14651 431 aaPredicted RBP15.14■□□□□ 0.01
VPS29-208ENST00000550267 HS3ST6Q96QI5 342 aa15.14■□□□□ 0.01
VPS29-208ENST00000550267 RIOK3O14730 519 aaKnown RBP15.13■□□□□ 0.01
VPS29-208ENST00000550267 EVC2Q86UK5 1308 aa15.13■□□□□ 0.01
VPS29-208ENST00000550267 POTEB3A0JP26 581 aa15.12■□□□□ 0.01
VPS29-208ENST00000550267 FAM205CA6NFA0 338 aa15.12■□□□□ 0.01
VPS29-208ENST00000550267 ZNF827Q17R98 1081 aa15.12■□□□□ 0.01
VPS29-208ENST00000550267 POTEBQ6S5H4 581 aa15.12■□□□□ 0.01
VPS29-208ENST00000550267 TTC21AQ8NDW8 1320 aa15.12■□□□□ 0.01
VPS29-208ENST00000550267 ABCC6O95255 1503 aa15.12■□□□□ 0.01
VPS29-208ENST00000550267 MAP3K5Q99683 1374 aa15.11■□□□□ 0.01
VPS29-208ENST00000550267 GPR162Q16538 588 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms