RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 USHBP1Q8N6Y0 703 aa25.67■■□□□ 1.7
CHMP1A-207ENST00000549328 PPM1GO15355 546 aaPredicted RBP25.66■■□□□ 1.7
CHMP1A-207ENST00000549328 ANO8Q9HCE9 1232 aaPredicted RBP25.66■■□□□ 1.7
CHMP1A-207ENST00000549328 POLKQ9UBT6 870 aa25.66■■□□□ 1.7
CHMP1A-207ENST00000549328 TATP17735 454 aaPredicted RBP25.65■■□□□ 1.7
CHMP1A-207ENST00000549328 ANKRD26Q9UPS8 1709 aa25.65■■□□□ 1.7
CHMP1A-207ENST00000549328 MAP2P11137 1827 aaKnown RBP25.64■■□□□ 1.7
CHMP1A-207ENST00000549328 NSD2O96028 1365 aa25.63■■□□□ 1.69
CHMP1A-207ENST00000549328 BTAF1O14981 1849 aa25.63■■□□□ 1.69
CHMP1A-207ENST00000549328 SHANK3Q9BYB0 1731 aa25.61■■□□□ 1.69
CHMP1A-207ENST00000549328 PRIM1P49642 420 aaKnown RBP25.61■■□□□ 1.69
CHMP1A-207ENST00000549328 STK32BQ9NY57 414 aa25.61■■□□□ 1.69
CHMP1A-207ENST00000549328 SLC15A2Q16348 729 aa25.6■■□□□ 1.69
CHMP1A-207ENST00000549328 SPON1Q9HCB6 807 aa25.6■■□□□ 1.69
CHMP1A-207ENST00000549328 NCAPD2Q15021 1401 aa25.6■■□□□ 1.69
CHMP1A-207ENST00000549328 TNNT2P45379 298 aaPredicted RBP25.58■■□□□ 1.69
CHMP1A-207ENST00000549328 SYTL4Q96C24 671 aaPredicted RBP25.58■■□□□ 1.69
CHMP1A-207ENST00000549328 PCDH11XQ9BZA7 1347 aa25.58■■□□□ 1.69
CHMP1A-207ENST00000549328 PCDH11YQ9BZA8 1340 aa25.58■■□□□ 1.69
CHMP1A-207ENST00000549328 EYA1Q99502 592 aa25.57■■□□□ 1.68
CHMP1A-207ENST00000549328 KNSTRNQ9Y448 316 aa25.57■■□□□ 1.68
CHMP1A-207ENST00000549328 SLC27A3Q5K4L6 730 aa25.56■■□□□ 1.68
CHMP1A-207ENST00000549328 KIF7Q2M1P5 1343 aa25.56■■□□□ 1.68
CHMP1A-207ENST00000549328 DOT1LQ8TEK3 1739 aa25.54■■□□□ 1.68
CHMP1A-207ENST00000549328 MORC1Q86VD1 984 aa25.54■■□□□ 1.68
CHMP1A-207ENST00000549328 LRRC4BQ9NT99 713 aa25.54■■□□□ 1.68
CHMP1A-207ENST00000549328 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.53■■□□□ 1.68
CHMP1A-207ENST00000549328 CASZ1Q86V15 1759 aa25.53■■□□□ 1.68
CHMP1A-207ENST00000549328 CYP27B1O15528 508 aa25.52■■□□□ 1.68
CHMP1A-207ENST00000549328 EIF4A2Q14240 407 aaKnown RBP25.52■■□□□ 1.68
CHMP1A-207ENST00000549328 PDGFDQ9GZP0 370 aaPredicted RBP25.52■■□□□ 1.68
CHMP1A-207ENST00000549328 SPG7Q9UQ90 795 aa25.51■■□□□ 1.67
CHMP1A-207ENST00000549328 PAPPAQ13219 1627 aa25.51■■□□□ 1.67
CHMP1A-207ENST00000549328 PKD1L3Q7Z443 1732 aa25.49■■□□□ 1.67
CHMP1A-207ENST00000549328 PPP1R1BQ9UD71 204 aaPredicted RBP25.49■■□□□ 1.67
CHMP1A-207ENST00000549328 PLEKHG2Q9H7P9 1386 aa25.48■■□□□ 1.67
CHMP1A-207ENST00000549328 NKX1-1Q15270 411 aaPredicted RBP25.48■■□□□ 1.67
CHMP1A-207ENST00000549328 AMER1Q5JTC6 1135 aaPredicted RBP25.48■■□□□ 1.67
CHMP1A-207ENST00000549328 ZBTB7AO95365 584 aa25.46■■□□□ 1.67
CHMP1A-207ENST00000549328 AKT1S1Q96B36 256 aa25.46■■□□□ 1.67
CHMP1A-207ENST00000549328 LY75O60449 1722 aa25.46■■□□□ 1.67
CHMP1A-207ENST00000549328 IGSF1Q8N6C5 1336 aa25.45■■□□□ 1.66
CHMP1A-207ENST00000549328 PER1O15534 1290 aaPredicted RBP25.45■■□□□ 1.66
CHMP1A-207ENST00000549328 ZNF827Q17R98 1081 aa25.45■■□□□ 1.66
CHMP1A-207ENST00000549328 MTFR1LQ9H019 292 aa25.45■■□□□ 1.66
CHMP1A-207ENST00000549328 HMGB2P26583 209 aaKnown RBP25.44■■□□□ 1.66
CHMP1A-207ENST00000549328 CCNL1Q9UK58 526 aaPredicted RBP25.43■■□□□ 1.66
CHMP1A-207ENST00000549328 PTGER2P43116 358 aa25.42■■□□□ 1.66
CHMP1A-207ENST00000549328 MPRIPQ6WCQ1 1025 aa25.42■■□□□ 1.66
CHMP1A-207ENST00000549328 IFNL2Q8IZJ0 200 aa25.42■■□□□ 1.66
CHMP1A-207ENST00000549328 ATF5Q9Y2D1 282 aaPredicted RBP25.42■■□□□ 1.66
CHMP1A-207ENST00000549328 KCNQ4P56696 695 aa25.41■■□□□ 1.66
CHMP1A-207ENST00000549328 PHKG2P15735 406 aa25.4■■□□□ 1.66
CHMP1A-207ENST00000549328 SLC16A10Q8TF71 515 aa25.4■■□□□ 1.66
CHMP1A-207ENST00000549328 SMARCC1Q92922 1105 aaPredicted RBP25.39■■□□□ 1.66
CHMP1A-207ENST00000549328 TFCP2L1Q9NZI6 479 aa25.39■■□□□ 1.66
CHMP1A-207ENST00000549328 SGIP1Q9BQI5 828 aa25.38■■□□□ 1.65
CHMP1A-207ENST00000549328 QSER1Q2KHR3 1735 aa25.37■■□□□ 1.65
CHMP1A-207ENST00000549328 TOGARAM1Q9Y4F4 1720 aa25.37■■□□□ 1.65
CHMP1A-207ENST00000549328 PALLDQ8WX93 1383 aa25.37■■□□□ 1.65
CHMP1A-207ENST00000549328 PIGBQ92521 554 aa25.37■■□□□ 1.65
CHMP1A-207ENST00000549328 ITGB4P16144 1822 aa25.37■■□□□ 1.65
CHMP1A-207ENST00000549328 PLEKHO1Q53GL0 409 aaPredicted RBP25.36■■□□□ 1.65
CHMP1A-207ENST00000549328 PNPLA7Q6ZV29 1317 aa25.36■■□□□ 1.65
CHMP1A-207ENST00000549328 NPC1L1Q9UHC9 1359 aa25.35■■□□□ 1.65
CHMP1A-207ENST00000549328 AMOTQ4VCS5 1084 aa25.35■■□□□ 1.65
CHMP1A-207ENST00000549328 IL13P35225 146 aa25.34■■□□□ 1.65
CHMP1A-207ENST00000549328 TMOD3Q9NYL9 352 aa25.34■■□□□ 1.65
CHMP1A-207ENST00000549328 HSP90AB1P08238 724 aaKnown RBP25.33■■□□□ 1.65
CHMP1A-207ENST00000549328 MTHFSP49914 203 aa25.33■■□□□ 1.65
CHMP1A-207ENST00000549328 CC2D1BQ5T0F9 858 aaKnown RBP25.32■■□□□ 1.64
CHMP1A-207ENST00000549328 KDRP35968 1356 aa25.31■■□□□ 1.64
CHMP1A-207ENST00000549328 SULT6B1Q6IMI4 303 aa25.31■■□□□ 1.64
CHMP1A-207ENST00000549328 AEBP1Q8IUX7 1158 aa25.31■■□□□ 1.64
CHMP1A-207ENST00000549328 DCAF5Q96JK2 942 aa25.31■■□□□ 1.64
CHMP1A-207ENST00000549328 ERVV-2B6SEH9 535 aa25.3■■□□□ 1.64
CHMP1A-207ENST00000549328 ARXQ96QS3 562 aa25.3■■□□□ 1.64
CHMP1A-207ENST00000549328 DCAF8L1A6NGE4 600 aa25.29■■□□□ 1.64
CHMP1A-207ENST00000549328 ZNF530Q6P9A1 599 aaPredicted RBP25.28■■□□□ 1.64
CHMP1A-207ENST00000549328 C5P01031 1676 aa25.28■■□□□ 1.64
CHMP1A-207ENST00000549328 TUBGCP6Q96RT7 1819 aa25.28■■□□□ 1.64
CHMP1A-207ENST00000549328 FLAD1Q8NFF5 587 aa25.27■■□□□ 1.64
CHMP1A-207ENST00000549328 SYT17Q9BSW7 474 aa25.27■■□□□ 1.64
CHMP1A-207ENST00000549328 FHDC1Q9C0D6 1143 aaPredicted RBP25.27■■□□□ 1.64
CHMP1A-207ENST00000549328 ASAP1Q9ULH1 1129 aa25.27■■□□□ 1.64
CHMP1A-207ENST00000549328 TAF1LQ8IZX4 1826 aa25.26■■□□□ 1.63
CHMP1A-207ENST00000549328 LOC102724428A0A0B4J2F2 783 aa25.26■■□□□ 1.63
CHMP1A-207ENST00000549328 SIK1P57059 783 aa25.26■■□□□ 1.63
CHMP1A-207ENST00000549328 COL23A1Q86Y22 540 aaPredicted RBP25.26■■□□□ 1.63
CHMP1A-207ENST00000549328 POLD1P28340 1107 aa25.25■■□□□ 1.63
CHMP1A-207ENST00000549328 C1orf141Q5JVX7 400 aa25.25■■□□□ 1.63
CHMP1A-207ENST00000549328 COL24A1Q17RW2 1714 aa25.24■■□□□ 1.63
CHMP1A-207ENST00000549328 MAP3K5Q99683 1374 aa25.24■■□□□ 1.63
CHMP1A-207ENST00000549328 ATG3Q9NT62 314 aa25.24■■□□□ 1.63
CHMP1A-207ENST00000549328 DIAPH1O60610 1272 aaKnown RBP25.23■■□□□ 1.63
CHMP1A-207ENST00000549328 MSH5O43196 834 aa25.22■■□□□ 1.63
CHMP1A-207ENST00000549328 AK7Q96M32 723 aa25.21■■□□□ 1.63
CHMP1A-207ENST00000549328 KDM6AO15550 1401 aaPredicted RBP25.2■■□□□ 1.63
CHMP1A-207ENST00000549328 C4BP0C0L5 1744 aa25.2■■□□□ 1.63
CHMP1A-207ENST00000549328 CABP4P57796 275 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms