RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 TUBGCP6Q96RT7 1819 aa24.24■■□□□ 1.47
CHMP1A-205ENST00000548650 PPP1R1BQ9UD71 204 aaPredicted RBP24.23■■□□□ 1.47
CHMP1A-205ENST00000548650 NSD2O96028 1365 aa24.23■■□□□ 1.47
CHMP1A-205ENST00000548650 NBPF6Q5VWK0 638 aa24.22■■□□□ 1.47
CHMP1A-205ENST00000548650 NBPF4Q96M43 638 aa24.22■■□□□ 1.47
CHMP1A-205ENST00000548650 PKD1L3Q7Z443 1732 aa24.21■■□□□ 1.47
CHMP1A-205ENST00000548650 ZBTB7AO95365 584 aa24.21■■□□□ 1.47
CHMP1A-205ENST00000548650 USHBP1Q8N6Y0 703 aa24.2■■□□□ 1.46
CHMP1A-205ENST00000548650 PTGER2P43116 358 aa24.19■■□□□ 1.46
CHMP1A-205ENST00000548650 HSP90AB2PQ58FF8 381 aa24.19■■□□□ 1.46
CHMP1A-205ENST00000548650 ZCRB1Q8TBF4 217 aaKnown RBP24.19■■□□□ 1.46
CHMP1A-205ENST00000548650 LRRC4BQ9NT99 713 aa24.19■■□□□ 1.46
CHMP1A-205ENST00000548650 MAP2P11137 1827 aaKnown RBP24.19■■□□□ 1.46
CHMP1A-205ENST00000548650 NCAPD2Q15021 1401 aa24.18■■□□□ 1.46
CHMP1A-205ENST00000548650 ZNF827Q17R98 1081 aa24.18■■□□□ 1.46
CHMP1A-205ENST00000548650 TOGARAM1Q9Y4F4 1720 aa24.18■■□□□ 1.46
CHMP1A-205ENST00000548650 CGNL1Q0VF96 1302 aa24.17■■□□□ 1.46
CHMP1A-205ENST00000548650 EMILIN1Q9Y6C2 1016 aa24.16■■□□□ 1.46
CHMP1A-205ENST00000548650 COL24A1Q17RW2 1714 aa24.15■■□□□ 1.46
CHMP1A-205ENST00000548650 PRIM1P49642 420 aaKnown RBP24.14■■□□□ 1.45
CHMP1A-205ENST00000548650 SLC27A3Q5K4L6 730 aa24.14■■□□□ 1.45
CHMP1A-205ENST00000548650 RAPGEF4Q8WZA2 1011 aa24.14■■□□□ 1.45
CHMP1A-205ENST00000548650 SYTL4Q96C24 671 aaPredicted RBP24.14■■□□□ 1.45
CHMP1A-205ENST00000548650 MTFR1LQ9H019 292 aa24.14■■□□□ 1.45
CHMP1A-205ENST00000548650 SGIP1Q9BQI5 828 aa24.13■■□□□ 1.45
CHMP1A-205ENST00000548650 ATF5Q9Y2D1 282 aaPredicted RBP24.13■■□□□ 1.45
CHMP1A-205ENST00000548650 AKT1S1Q96B36 256 aa24.12■■□□□ 1.45
CHMP1A-205ENST00000548650 ITGB4P16144 1822 aa24.12■■□□□ 1.45
CHMP1A-205ENST00000548650 TATP17735 454 aaPredicted RBP24.11■■□□□ 1.45
CHMP1A-205ENST00000548650 C5P01031 1676 aa24.11■■□□□ 1.45
CHMP1A-205ENST00000548650 PCDH11XQ9BZA7 1347 aa24.1■■□□□ 1.45
CHMP1A-205ENST00000548650 PCDH11YQ9BZA8 1340 aa24.1■■□□□ 1.45
CHMP1A-205ENST00000548650 TAF1LQ8IZX4 1826 aa24.08■■□□□ 1.45
CHMP1A-205ENST00000548650 HSPA5P11021 654 aaKnown RBP24.08■■□□□ 1.45
CHMP1A-205ENST00000548650 EIF4G2P78344 907 aaKnown RBP eCLIP24.08■■□□□ 1.45
CHMP1A-205ENST00000548650 KCNQ4P56696 695 aa24.07■■□□□ 1.44
CHMP1A-205ENST00000548650 POLR3GLQ9BT43 218 aa24.07■■□□□ 1.44
CHMP1A-205ENST00000548650 WASHC2AQ641Q2 1341 aa24.07■■□□□ 1.44
CHMP1A-205ENST00000548650 PNPLA7Q6ZV29 1317 aa24.07■■□□□ 1.44
CHMP1A-205ENST00000548650 CCER1Q8TC90 406 aaPredicted RBP24.06■■□□□ 1.44
CHMP1A-205ENST00000548650 PPM1GO15355 546 aaPredicted RBP24.05■■□□□ 1.44
CHMP1A-205ENST00000548650 CYP27B1O15528 508 aa24.04■■□□□ 1.44
CHMP1A-205ENST00000548650 FHDC1Q9C0D6 1143 aaPredicted RBP24.04■■□□□ 1.44
CHMP1A-205ENST00000548650 POLKQ9UBT6 870 aa24.03■■□□□ 1.44
CHMP1A-205ENST00000548650 CCNL1Q9UK58 526 aaPredicted RBP24.03■■□□□ 1.44
CHMP1A-205ENST00000548650 MAP3K5Q99683 1374 aa24.03■■□□□ 1.44
CHMP1A-205ENST00000548650 ARXQ96QS3 562 aa24■■□□□ 1.43
CHMP1A-205ENST00000548650 EYA1Q99502 592 aa24■■□□□ 1.43
CHMP1A-205ENST00000548650 SYT17Q9BSW7 474 aa24■■□□□ 1.43
CHMP1A-205ENST00000548650 PALLDQ8WX93 1383 aa24■■□□□ 1.43
CHMP1A-205ENST00000548650 SLC16A10Q8TF71 515 aa23.99■■□□□ 1.43
CHMP1A-205ENST00000548650 TFCP2L1Q9NZI6 479 aa23.99■■□□□ 1.43
CHMP1A-205ENST00000548650 DCAF8L1A6NGE4 600 aa23.98■■□□□ 1.43
CHMP1A-205ENST00000548650 YY1P25490 414 aa23.98■■□□□ 1.43
CHMP1A-205ENST00000548650 C4BP0C0L5 1744 aa23.98■■□□□ 1.43
CHMP1A-205ENST00000548650 TNNT2P45379 298 aaPredicted RBP23.97■■□□□ 1.43
CHMP1A-205ENST00000548650 PLEKHG2Q9H7P9 1386 aa23.97■■□□□ 1.43
CHMP1A-205ENST00000548650 PANK3Q9H999 370 aa23.97■■□□□ 1.43
CHMP1A-205ENST00000548650 EIF4A2Q14240 407 aaKnown RBP23.96■■□□□ 1.43
CHMP1A-205ENST00000548650 NKX1-1Q15270 411 aaPredicted RBP23.95■■□□□ 1.42
CHMP1A-205ENST00000548650 MPRIPQ6WCQ1 1025 aa23.95■■□□□ 1.42
CHMP1A-205ENST00000548650 SPG7Q9UQ90 795 aa23.95■■□□□ 1.42
CHMP1A-205ENST00000548650 UBR3Q6ZT12 1888 aa23.95■■□□□ 1.42
CHMP1A-205ENST00000548650 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.94■■□□□ 1.42
CHMP1A-205ENST00000548650 IGSF1Q8N6C5 1336 aa23.93■■□□□ 1.42
CHMP1A-205ENST00000548650 CHD4Q14839 1912 aa23.93■■□□□ 1.42
CHMP1A-205ENST00000548650 UTRNP46939 3433 aa23.91■■□□□ 1.42
CHMP1A-205ENST00000548650 POLD1P28340 1107 aa23.9■■□□□ 1.42
CHMP1A-205ENST00000548650 COL23A1Q86Y22 540 aaPredicted RBP23.9■■□□□ 1.42
CHMP1A-205ENST00000548650 PIGBQ92521 554 aa23.9■■□□□ 1.42
CHMP1A-205ENST00000548650 PHKG2P15735 406 aa23.89■■□□□ 1.41
CHMP1A-205ENST00000548650 SMARCC1Q92922 1105 aaPredicted RBP23.89■■□□□ 1.41
CHMP1A-205ENST00000548650 IFNL2Q8IZJ0 200 aa23.86■■□□□ 1.41
CHMP1A-205ENST00000548650 ZNF831Q5JPB2 1677 aa23.86■■□□□ 1.41
CHMP1A-205ENST00000548650 KIF7Q2M1P5 1343 aa23.85■■□□□ 1.41
CHMP1A-205ENST00000548650 TMOD3Q9NYL9 352 aa23.85■■□□□ 1.41
CHMP1A-205ENST00000548650 MSH5O43196 834 aa23.84■■□□□ 1.41
CHMP1A-205ENST00000548650 MORC1Q86VD1 984 aa23.84■■□□□ 1.41
CHMP1A-205ENST00000548650 KLHL34Q8N239 644 aa23.84■■□□□ 1.41
CHMP1A-205ENST00000548650 KDRP35968 1356 aa23.83■■□□□ 1.41
CHMP1A-205ENST00000548650 HMGB2P26583 209 aaKnown RBP23.83■■□□□ 1.41
CHMP1A-205ENST00000548650 MSL1Q68DK7 614 aa23.83■■□□□ 1.41
CHMP1A-205ENST00000548650 AMIGO3Q86WK7 504 aa23.83■■□□□ 1.41
CHMP1A-205ENST00000548650 COL5A3P25940 1745 aaPredicted RBP23.83■■□□□ 1.41
CHMP1A-205ENST00000548650 KDM6AO15550 1401 aaPredicted RBP23.83■■□□□ 1.4
CHMP1A-205ENST00000548650 KNSTRNQ9Y448 316 aa23.82■■□□□ 1.4
CHMP1A-205ENST00000548650 LOC102724428A0A0B4J2F2 783 aa23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 SIK1P57059 783 aa23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 AMER1Q5JTC6 1135 aaPredicted RBP23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 FLAD1Q8NFF5 587 aa23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 NLGN2Q8NFZ4 835 aa23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 AK7Q96M32 723 aa23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 ASAP1Q9ULH1 1129 aa23.81■■□□□ 1.4
CHMP1A-205ENST00000548650 AEBP1Q8IUX7 1158 aa23.8■■□□□ 1.4
CHMP1A-205ENST00000548650 LINC00116Q8NCU8 138 aa23.8■■□□□ 1.4
CHMP1A-205ENST00000548650 ITPK1Q13572 414 aa23.78■■□□□ 1.4
CHMP1A-205ENST00000548650 ATG3Q9NT62 314 aa23.78■■□□□ 1.4
CHMP1A-205ENST00000548650 SCN11AQ9UI33 1791 aa23.78■■□□□ 1.4
CHMP1A-205ENST00000548650 PLEKHO1Q53GL0 409 aaPredicted RBP23.76■■□□□ 1.39
CHMP1A-205ENST00000548650 CICQ96RK0 1608 aaPredicted RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms