RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 KIAA0232Q92628 1395 aa23.35■■□□□ 1.33
PRPF40B-208ENST00000548436 NUTM2GQ5VZR2 741 aa23.34■■□□□ 1.33
PRPF40B-208ENST00000548436 NFKBIBQ15653 356 aa23.32■■□□□ 1.32
PRPF40B-208ENST00000548436 RGS12O14924 1447 aa23.32■■□□□ 1.32
PRPF40B-208ENST00000548436 GCC1Q96CN9 775 aa23.32■■□□□ 1.32
PRPF40B-208ENST00000548436 MIS18AQ9NYP9 233 aa23.31■■□□□ 1.32
PRPF40B-208ENST00000548436 KIF24Q5T7B8 1368 aa23.31■■□□□ 1.32
PRPF40B-208ENST00000548436 ZNF142P52746 1687 aaPredicted RBP23.31■■□□□ 1.32
PRPF40B-208ENST00000548436 HAP1P54257 671 aaPredicted RBP23.31■■□□□ 1.32
PRPF40B-208ENST00000548436 HOXC9P31274 260 aa23.3■■□□□ 1.32
PRPF40B-208ENST00000548436 ANKRD45Q5TZF3 282 aa23.3■■□□□ 1.32
PRPF40B-208ENST00000548436 BECN1Q14457 450 aa23.29■■□□□ 1.32
PRPF40B-208ENST00000548436 INTS3Q68E01 1043 aaKnown RBP23.29■■□□□ 1.32
PRPF40B-208ENST00000548436 ANKLE2Q86XL3 938 aa23.29■■□□□ 1.32
PRPF40B-208ENST00000548436 ABTB2Q8N961 1025 aa23.29■■□□□ 1.32
PRPF40B-208ENST00000548436 KDM4FA0A1W2PPD8 638 aa23.29■■□□□ 1.32
PRPF40B-208ENST00000548436 RTF1Q92541 710 aaKnown RBP23.29■■□□□ 1.32
PRPF40B-208ENST00000548436 NWD1Q149M9 1564 aa23.28■■□□□ 1.32
PRPF40B-208ENST00000548436 MFAP1P55081 439 aaKnown RBP23.28■■□□□ 1.32
PRPF40B-208ENST00000548436 RBM33Q96EV2 1170 aaKnown RBP23.28■■□□□ 1.32
PRPF40B-208ENST00000548436 GAS2L2Q8NHY3 880 aa23.27■■□□□ 1.32
PRPF40B-208ENST00000548436 LTN1O94822 1766 aa23.26■■□□□ 1.31
PRPF40B-208ENST00000548436 TSPYL4Q9UJ04 414 aa23.26■■□□□ 1.31
PRPF40B-208ENST00000548436 PHF8Q9UPP1 1060 aa23.26■■□□□ 1.31
PRPF40B-208ENST00000548436 LRRC37A3O60309 1634 aa23.25■■□□□ 1.31
PRPF40B-208ENST00000548436 C22orf23Q9BZE7 217 aa23.25■■□□□ 1.31
PRPF40B-208ENST00000548436 PTPRCP08575 1304 aa23.24■■□□□ 1.31
PRPF40B-208ENST00000548436 TBC1D2Q9BYX2 928 aa23.23■■□□□ 1.31
PRPF40B-208ENST00000548436 SETD1BQ9UPS6 1966 aaKnown RBP23.23■■□□□ 1.31
PRPF40B-208ENST00000548436 SLC4A2P04920 1241 aa23.23■■□□□ 1.31
PRPF40B-208ENST00000548436 BMP2KLQ5H9B9 411 aa23.22■■□□□ 1.31
PRPF40B-208ENST00000548436 C14orf37Q86TY3 774 aa23.22■■□□□ 1.31
PRPF40B-208ENST00000548436 LTV1Q96GA3 475 aaPredicted RBP23.21■■□□□ 1.31
PRPF40B-208ENST00000548436 MSH6P52701 1360 aa23.21■■□□□ 1.31
PRPF40B-208ENST00000548436 ATP10DQ9P241 1426 aa23.21■■□□□ 1.31
PRPF40B-208ENST00000548436 HTATSF1O43719 755 aaKnown RBP23.21■■□□□ 1.31
PRPF40B-208ENST00000548436 GNAT3A8MTJ3 354 aa23.2■■□□□ 1.3
PRPF40B-208ENST00000548436 G2E3Q7L622 706 aa23.19■■□□□ 1.3
PRPF40B-208ENST00000548436 DCTPP1Q9H773 170 aa23.19■■□□□ 1.3
PRPF40B-208ENST00000548436 ADGRL3Q9HAR2 1447 aa23.18■■□□□ 1.3
PRPF40B-208ENST00000548436 FRAT2O75474 233 aaPredicted RBP23.18■■□□□ 1.3
PRPF40B-208ENST00000548436 ANKRD44Q8N8A2 993 aa23.18■■□□□ 1.3
PRPF40B-208ENST00000548436 SLKQ9H2G2 1235 aaPredicted RBP23.18■■□□□ 1.3
PRPF40B-208ENST00000548436 RTL1A6NKG5 1358 aa23.17■■□□□ 1.3
PRPF40B-208ENST00000548436 MEIS3Q99687 375 aa23.17■■□□□ 1.3
PRPF40B-208ENST00000548436 NFAT5O94916 1531 aa23.17■■□□□ 1.3
PRPF40B-208ENST00000548436 ANTXR1Q9H6X2 564 aa23.17■■□□□ 1.3
PRPF40B-208ENST00000548436 CEP85Q6P2H3 762 aa23.16■■□□□ 1.3
PRPF40B-208ENST00000548436 USHBP1Q8N6Y0 703 aa23.16■■□□□ 1.3
PRPF40B-208ENST00000548436 IL17REQ8NFR9 667 aa23.16■■□□□ 1.3
PRPF40B-208ENST00000548436 MAP3K5Q99683 1374 aa23.16■■□□□ 1.3
PRPF40B-208ENST00000548436 ESCO1Q5FWF5 840 aa23.15■■□□□ 1.3
PRPF40B-208ENST00000548436 FAM208AQ9UK61 1670 aaKnown RBP23.15■■□□□ 1.3
PRPF40B-208ENST00000548436 RPAP2Q8IXW5 612 aaPredicted RBP23.15■■□□□ 1.3
PRPF40B-208ENST00000548436 CACNA1FO60840 1977 aa23.14■■□□□ 1.3
PRPF40B-208ENST00000548436 IP6K1Q92551 441 aa23.14■■□□□ 1.29
PRPF40B-208ENST00000548436 RGPD2P0DJD1 1756 aa23.14■■□□□ 1.29
PRPF40B-208ENST00000548436 F6X3S4 739 aa23.13■■□□□ 1.29
PRPF40B-208ENST00000548436 PSME1Q06323 249 aa23.13■■□□□ 1.29
PRPF40B-208ENST00000548436 RBM25P49756 843 aaKnown RBP23.13■■□□□ 1.29
PRPF40B-208ENST00000548436 PLEKHM2Q8IWE5 1019 aa23.12■■□□□ 1.29
PRPF40B-208ENST00000548436 NPHP4O75161 1426 aaPredicted RBP23.12■■□□□ 1.29
PRPF40B-208ENST00000548436 SLC4A10Q6U841 1118 aa23.11■■□□□ 1.29
PRPF40B-208ENST00000548436 TBC1D9Q6ZT07 1266 aa23.1■■□□□ 1.29
PRPF40B-208ENST00000548436 GSPT1P15170 499 aaKnown RBP23.1■■□□□ 1.29
PRPF40B-208ENST00000548436 TAF7Q15545 349 aaPredicted RBP23.1■■□□□ 1.29
PRPF40B-208ENST00000548436 C16orf71Q8IYS4 520 aaPredicted RBP23.1■■□□□ 1.29
PRPF40B-208ENST00000548436 STK31Q9BXU1 1019 aa23.1■■□□□ 1.29
PRPF40B-208ENST00000548436 CCT4P50991 539 aaKnown RBP23.09■■□□□ 1.29
PRPF40B-208ENST00000548436 NBPF6Q5VWK0 638 aa23.09■■□□□ 1.29
PRPF40B-208ENST00000548436 NBPF4Q96M43 638 aa23.09■■□□□ 1.29
PRPF40B-208ENST00000548436 PHRF1Q9P1Y6 1649 aaKnown RBP23.09■■□□□ 1.29
PRPF40B-208ENST00000548436 CCDC30Q5VVM6 783 aa23.08■■□□□ 1.29
PRPF40B-208ENST00000548436 NECTIN2Q92692 538 aa23.08■■□□□ 1.29
PRPF40B-208ENST00000548436 SPRYD3Q8NCJ5 442 aa23.07■■□□□ 1.28
PRPF40B-208ENST00000548436 ORAI2Q96SN7 254 aa23.07■■□□□ 1.28
PRPF40B-208ENST00000548436 BCL11AQ9H165 835 aa23.07■■□□□ 1.28
PRPF40B-208ENST00000548436 BABAM1Q9NWV8 329 aa23.07■■□□□ 1.28
PRPF40B-208ENST00000548436 FLIIQ13045 1269 aa23.07■■□□□ 1.28
PRPF40B-208ENST00000548436 KCNH5Q8NCM2 988 aa23.07■■□□□ 1.28
PRPF40B-208ENST00000548436 ZBTB7CA1YPR0 619 aa23.06■■□□□ 1.28
PRPF40B-208ENST00000548436 GSE1Q14687 1217 aa23.06■■□□□ 1.28
PRPF40B-208ENST00000548436 OTUD7AQ8TE49 926 aaPredicted RBP23.05■■□□□ 1.28
PRPF40B-208ENST00000548436 SMARCA5O60264 1052 aaPredicted RBP23.05■■□□□ 1.28
PRPF40B-208ENST00000548436 TTC22Q5TAA0 569 aa23.05■■□□□ 1.28
PRPF40B-208ENST00000548436 N4BP2Q86UW6 1770 aaPredicted RBP23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 CDC45O75419 566 aa23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 XPCQ01831 940 aaPredicted RBP23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 CEMIPQ8WUJ3 1361 aa23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 FKBP5Q13451 457 aaPredicted RBP23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 KIF2CQ99661 725 aa23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 SOS1Q07889 1333 aaPredicted RBP23.04■■□□□ 1.28
PRPF40B-208ENST00000548436 APBB1O00213 710 aa23.03■■□□□ 1.28
PRPF40B-208ENST00000548436 MED1Q15648 1581 aaPredicted RBP23.03■■□□□ 1.28
PRPF40B-208ENST00000548436 LRRC59Q96AG4 307 aaKnown RBP23.02■■□□□ 1.28
PRPF40B-208ENST00000548436 HSCBQ8IWL3 235 aa23.02■■□□□ 1.28
PRPF40B-208ENST00000548436 LMO7Q8WWI1 1683 aa23.01■■□□□ 1.27
PRPF40B-208ENST00000548436 LGR6Q9HBX8 967 aa23.01■■□□□ 1.27
PRPF40B-208ENST00000548436 SLIT3O75094 1523 aa23.01■■□□□ 1.27
PRPF40B-208ENST00000548436 KDM3BQ7LBC6 1761 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms