RNA–Protein interactions for RNA: ENST00000543449.1

NPIPB4-217, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 685 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-217	ENST00000543449	MSH5	O43196	834 aa		14.01	□□□□□ -0.17
NPIPB4-217	ENST00000543449	TNNT2	P45379	298 aa	Predicted RBP	14	□□□□□ -0.17
NPIPB4-217	ENST00000543449	R3HDM1	Q15032	1099 aa	Known RBP	14	□□□□□ -0.17
NPIPB4-217	ENST00000543449	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	14	□□□□□ -0.17	5e-7	■■■■■ 27
NPIPB4-217	ENST00000543449	SPG7	Q9UQ90	795 aa		14	□□□□□ -0.17
NPIPB4-217	ENST00000543449	NHS	Q6T4R5	1651 aa		14	□□□□□ -0.17
NPIPB4-217	ENST00000543449	MEGF6	O75095	1541 aa		14	□□□□□ -0.17
NPIPB4-217	ENST00000543449	NCAPD2	Q15021	1401 aa		13.99	□□□□□ -0.17
NPIPB4-217	ENST00000543449	PSD	A5PKW4	1024 aa	Predicted RBP	13.99	□□□□□ -0.17
NPIPB4-217	ENST00000543449	ACSBG1	Q96GR2	724 aa		13.99	□□□□□ -0.17
NPIPB4-217	ENST00000543449	NPC1L1	Q9UHC9	1359 aa		13.98	□□□□□ -0.17
NPIPB4-217	ENST00000543449	TXNRD1	Q16881	649 aa		13.98	□□□□□ -0.17
NPIPB4-217	ENST00000543449	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.98	□□□□□ -0.17
NPIPB4-217	ENST00000543449	USHBP1	Q8N6Y0	703 aa		13.98	□□□□□ -0.17
NPIPB4-217	ENST00000543449	MAP2	P11137	1827 aa	Known RBP	13.98	□□□□□ -0.17
NPIPB4-217	ENST00000543449	KCNQ2	O43526	872 aa		13.97	□□□□□ -0.17
NPIPB4-217	ENST00000543449	SLC27A3	Q5K4L6	730 aa		13.97	□□□□□ -0.17
NPIPB4-217	ENST00000543449	EYA1	Q99502	592 aa		13.97	□□□□□ -0.17
NPIPB4-217	ENST00000543449	STK32B	Q9NY57	414 aa		13.97	□□□□□ -0.17
NPIPB4-217	ENST00000543449	NUP188	Q5SRE5	1749 aa		13.97	□□□□□ -0.17
NPIPB4-217	ENST00000543449	EIF4A2	Q14240	407 aa	Known RBP	13.96	□□□□□ -0.17
NPIPB4-217	ENST00000543449	LRP5	O75197	1615 aa		13.96	□□□□□ -0.17
NPIPB4-217	ENST00000543449	PER1	O15534	1290 aa	Predicted RBP	13.95	□□□□□ -0.18
NPIPB4-217	ENST00000543449	PRIM1	P49642	420 aa	Known RBP	13.95	□□□□□ -0.18
NPIPB4-217	ENST00000543449	PTF1A	Q7RTS3	328 aa		13.95	□□□□□ -0.18
NPIPB4-217	ENST00000543449	SYTL4	Q96C24	671 aa	Predicted RBP	13.95	□□□□□ -0.18
NPIPB4-217	ENST00000543449	RGPD2	P0DJD1	1756 aa		13.95	□□□□□ -0.18
NPIPB4-217	ENST00000543449	IGSF1	Q8N6C5	1336 aa		13.94	□□□□□ -0.18
NPIPB4-217	ENST00000543449	HSP90AB1	P08238	724 aa	Known RBP	13.93	□□□□□ -0.18
NPIPB4-217	ENST00000543449	NKX1-1	Q15270	411 aa	Predicted RBP	13.93	□□□□□ -0.18
NPIPB4-217	ENST00000543449	AMOT	Q4VCS5	1084 aa		13.93	□□□□□ -0.18
NPIPB4-217	ENST00000543449	IFNL2	Q8IZJ0	200 aa		13.93	□□□□□ -0.18
NPIPB4-217	ENST00000543449	PROM2	Q8N271	834 aa		13.93	□□□□□ -0.18
NPIPB4-217	ENST00000543449	SLC15A2	Q16348	729 aa		13.92	□□□□□ -0.18
NPIPB4-217	ENST00000543449	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.92	□□□□□ -0.18
NPIPB4-217	ENST00000543449	SMARCC1	Q92922	1105 aa	Predicted RBP	13.92	□□□□□ -0.18
NPIPB4-217	ENST00000543449	SPON1	Q9HCB6	807 aa		13.92	□□□□□ -0.18
NPIPB4-217	ENST00000543449	PKD1L3	Q7Z443	1732 aa		13.91	□□□□□ -0.18
NPIPB4-217	ENST00000543449	CYP27B1	O15528	508 aa		13.91	□□□□□ -0.18
NPIPB4-217	ENST00000543449	BTAF1	O14981	1849 aa		13.91	□□□□□ -0.18
NPIPB4-217	ENST00000543449	SHANK3	Q9BYB0	1731 aa		13.9	□□□□□ -0.18
NPIPB4-217	ENST00000543449	MTHFS	P49914	203 aa		13.9	□□□□□ -0.18
NPIPB4-217	ENST00000543449	CC2D1B	Q5T0F9	858 aa	Known RBP	13.9	□□□□□ -0.18
NPIPB4-217	ENST00000543449	DOT1L	Q8TEK3	1739 aa		13.9	□□□□□ -0.18
NPIPB4-217	ENST00000543449	KAT6B	Q8WYB5	2073 aa		13.89	□□□□□ -0.19
NPIPB4-217	ENST00000543449	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.89	□□□□□ -0.19
NPIPB4-217	ENST00000543449	PHKG2	P15735	406 aa		13.88	□□□□□ -0.19
NPIPB4-217	ENST00000543449	IL13	P35225	146 aa		13.88	□□□□□ -0.19
NPIPB4-217	ENST00000543449	CCNL1	Q9UK58	526 aa	Predicted RBP	13.88	□□□□□ -0.19
NPIPB4-217	ENST00000543449	KDR	P35968	1356 aa		13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	DIAPH1	O60610	1272 aa	Known RBP	13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	C1orf141	Q5JVX7	400 aa		13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	MPRIP	Q6WCQ1	1025 aa		13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	DCAF5	Q96JK2	942 aa		13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	CFAP53	Q96M91	514 aa		13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	TMOD3	Q9NYL9	352 aa		13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.87	□□□□□ -0.19
NPIPB4-217	ENST00000543449	ERVV-2	B6SEH9	535 aa		13.86	□□□□□ -0.19
NPIPB4-217	ENST00000543449	SULT6B1	Q6IMI4	303 aa		13.86	□□□□□ -0.19
NPIPB4-217	ENST00000543449	SLC16A10	Q8TF71	515 aa		13.86	□□□□□ -0.19
NPIPB4-217	ENST00000543449	PALLD	Q8WX93	1383 aa		13.85	□□□□□ -0.19
NPIPB4-217	ENST00000543449	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.85	□□□□□ -0.19
NPIPB4-217	ENST00000543449	MTFR1L	Q9H019	292 aa		13.85	□□□□□ -0.19
NPIPB4-217	ENST00000543449	LRRC4B	Q9NT99	713 aa		13.85	□□□□□ -0.19
NPIPB4-217	ENST00000543449	PAPPA	Q13219	1627 aa		13.85	□□□□□ -0.19
NPIPB4-217	ENST00000543449	FLAD1	Q8NFF5	587 aa		13.84	□□□□□ -0.19
NPIPB4-217	ENST00000543449	AKT1S1	Q96B36	256 aa		13.84	□□□□□ -0.19
NPIPB4-217	ENST00000543449	TFCP2L1	Q9NZI6	479 aa		13.84	□□□□□ -0.19
NPIPB4-217	ENST00000543449	PIGB	Q92521	554 aa		13.83	□□□□□ -0.2
NPIPB4-217	ENST00000543449	NUDC	Q9Y266	331 aa		13.83	□□□□□ -0.2
NPIPB4-217	ENST00000543449	LY75	O60449	1722 aa		13.83	□□□□□ -0.2
NPIPB4-217	ENST00000543449	DCAF8L1	A6NGE4	600 aa		13.82	□□□□□ -0.2
NPIPB4-217	ENST00000543449	AKAP4	Q5JQC9	854 aa		13.82	□□□□□ -0.2
NPIPB4-217	ENST00000543449	CASZ1	Q86V15	1759 aa		13.81	□□□□□ -0.2
NPIPB4-217	ENST00000543449	ZEB1	P37275	1124 aa	Predicted RBP	13.81	□□□□□ -0.2
NPIPB4-217	ENST00000543449	CABP4	P57796	275 aa		13.81	□□□□□ -0.2
NPIPB4-217	ENST00000543449	ZNF827	Q17R98	1081 aa		13.81	□□□□□ -0.2
NPIPB4-217	ENST00000543449	AEBP1	Q8IUX7	1158 aa		13.81	□□□□□ -0.2
NPIPB4-217	ENST00000543449	ZBTB7A	O95365	584 aa		13.8	□□□□□ -0.2
NPIPB4-217	ENST00000543449	QSER1	Q2KHR3	1735 aa		13.79	□□□□□ -0.2
NPIPB4-217	ENST00000543449	LOC102724428	A0A0B4J2F2	783 aa		13.79	□□□□□ -0.2
NPIPB4-217	ENST00000543449	POLD1	P28340	1107 aa		13.79	□□□□□ -0.2
NPIPB4-217	ENST00000543449	SIK1	P57059	783 aa		13.79	□□□□□ -0.2
NPIPB4-217	ENST00000543449	TOGARAM1	Q9Y4F4	1720 aa		13.78	□□□□□ -0.2
NPIPB4-217	ENST00000543449	U2SURP	O15042	1029 aa	Known RBP	13.78	□□□□□ -0.2
NPIPB4-217	ENST00000543449	CNGB1	Q14028	1251 aa	Predicted RBP	13.78	□□□□□ -0.2
NPIPB4-217	ENST00000543449	GAS2L2	Q8NHY3	880 aa		13.78	□□□□□ -0.2
NPIPB4-217	ENST00000543449	AK7	Q96M32	723 aa		13.78	□□□□□ -0.2
NPIPB4-217	ENST00000543449	ITGB4	P16144	1822 aa		13.78	□□□□□ -0.2
NPIPB4-217	ENST00000543449	HMOX1	P09601	288 aa		13.77	□□□□□ -0.21
NPIPB4-217	ENST00000543449	PPP2R1A	P30153	589 aa		13.77	□□□□□ -0.21
NPIPB4-217	ENST00000543449	PNPLA7	Q6ZV29	1317 aa		13.77	□□□□□ -0.21
NPIPB4-217	ENST00000543449	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.77	□□□□□ -0.21
NPIPB4-217	ENST00000543449	COL3A1	P02461	1466 aa	Predicted RBP	13.76	□□□□□ -0.21
NPIPB4-217	ENST00000543449	ATP6V1A	P38606	617 aa		13.76	□□□□□ -0.21
NPIPB4-217	ENST00000543449	PTGER2	P43116	358 aa		13.76	□□□□□ -0.21
NPIPB4-217	ENST00000543449	ATG3	Q9NT62	314 aa		13.76	□□□□□ -0.21
NPIPB4-217	ENST00000543449	ASAP1	Q9ULH1	1129 aa		13.76	□□□□□ -0.21
NPIPB4-217	ENST00000543449	KDM6A	O15550	1401 aa	Predicted RBP	13.75	□□□□□ -0.21
NPIPB4-217	ENST00000543449	NEFM	P07197	916 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 114.9 ms