RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ATF5Q9Y2D1 282 aaPredicted RBP15.46■□□□□ 0.07
YBX3-213ENST00000542641 POTEAQ6S8J7 498 aa15.45■□□□□ 0.06
YBX3-213ENST00000542641 AEBP1Q8IUX7 1158 aa15.45■□□□□ 0.06
YBX3-213ENST00000542641 PNISRQ8TF01 805 aaKnown RBP15.45■□□□□ 0.06
YBX3-213ENST00000542641 RAPGEF4Q8WZA2 1011 aa15.45■□□□□ 0.06
YBX3-213ENST00000542641 FAM208AQ9UK61 1670 aaKnown RBP15.44■□□□□ 0.06
YBX3-213ENST00000542641 IL2RBP14784 551 aa15.44■□□□□ 0.06
YBX3-213ENST00000542641 RXRBP28702 533 aa15.44■□□□□ 0.06
YBX3-213ENST00000542641 RBM6P78332 1123 aaKnown RBP15.44■□□□□ 0.06
YBX3-213ENST00000542641 FAM98CQ17RN3 349 aaKnown RBP15.44■□□□□ 0.06
YBX3-213ENST00000542641 BARGINQ6ZT62 677 aa15.44■□□□□ 0.06
YBX3-213ENST00000542641 FCHSD2O94868 740 aa15.43■□□□□ 0.06
YBX3-213ENST00000542641 TATP17735 454 aaPredicted RBP15.43■□□□□ 0.06
YBX3-213ENST00000542641 CDCA7Q9BWT1 371 aaPredicted RBP15.43■□□□□ 0.06
YBX3-213ENST00000542641 ADAMTS8Q9UP79 889 aa15.43■□□□□ 0.06
YBX3-213ENST00000542641 RGPD2P0DJD1 1756 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 KDRP35968 1356 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 A0A0G2JS52 829 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 MYT1Q01538 1121 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 FAM9BQ8IZU0 186 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 RSPH6AQ9H0K4 717 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 PNNQ9H307 717 aaKnown RBP15.42■□□□□ 0.06
YBX3-213ENST00000542641 RGPD1P0DJD0 1748 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 NCAPD2Q15021 1401 aa15.42■□□□□ 0.06
YBX3-213ENST00000542641 PRKAR2BP31323 418 aa15.41■□□□□ 0.06
YBX3-213ENST00000542641 ONECUT3O60422 494 aaPredicted RBP15.4■□□□□ 0.06
YBX3-213ENST00000542641 GLI3P10071 1580 aa15.4■□□□□ 0.06
YBX3-213ENST00000542641 EXOC5O00471 708 aa15.39■□□□□ 0.05
YBX3-213ENST00000542641 NEFMP07197 916 aa15.39■□□□□ 0.05
YBX3-213ENST00000542641 MEGF6O75095 1541 aa15.38■□□□□ 0.05
YBX3-213ENST00000542641 DISP2A7MBM2 1401 aa15.38■□□□□ 0.05
YBX3-213ENST00000542641 DDB1Q16531 1140 aa15.38■□□□□ 0.05
YBX3-213ENST00000542641 PLEKHO1Q53GL0 409 aaPredicted RBP15.38■□□□□ 0.05
YBX3-213ENST00000542641 SEPT12Q8IYM1 358 aa15.38■□□□□ 0.05
YBX3-213ENST00000542641 AMOTQ4VCS5 1084 aa15.37■□□□□ 0.05
YBX3-213ENST00000542641 CCDC146Q8IYE0 955 aa15.37■□□□□ 0.05
YBX3-213ENST00000542641 ZCRB1Q8TBF4 217 aaKnown RBP15.37■□□□□ 0.05
YBX3-213ENST00000542641 PHACTR3Q96KR7 559 aa15.37■□□□□ 0.05
YBX3-213ENST00000542641 PLEKHF1Q96S99 279 aa15.37■□□□□ 0.05
YBX3-213ENST00000542641 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.37■□□□□ 0.055e-7■■□□□ 13
YBX3-213ENST00000542641 SPG7Q9UQ90 795 aa15.37■□□□□ 0.05
YBX3-213ENST00000542641 OVOS2A0A0G2JMS6 1433 aa15.36■□□□□ 0.05
YBX3-213ENST00000542641 RUNDC1Q96C34 613 aa15.36■□□□□ 0.05
YBX3-213ENST00000542641 MAPK8IP3Q9UPT6 1336 aa15.36■□□□□ 0.05
YBX3-213ENST00000542641 PDE3BQ13370 1112 aa15.35■□□□□ 0.05
YBX3-213ENST00000542641 DDX54Q8TDD1 881 aaKnown RBP15.35■□□□□ 0.05
YBX3-213ENST00000542641 PLEKHG2Q9H7P9 1386 aa15.35■□□□□ 0.05
YBX3-213ENST00000542641 MTHFSDQ2M296 383 aaKnown RBP15.34■□□□□ 0.05
YBX3-213ENST00000542641 ZNF530Q6P9A1 599 aaPredicted RBP15.33■□□□□ 0.04
YBX3-213ENST00000542641 GAS2L2Q8NHY3 880 aa15.33■□□□□ 0.04
YBX3-213ENST00000542641 PCDH11XQ9BZA7 1347 aa15.33■□□□□ 0.04
YBX3-213ENST00000542641 PCDH11YQ9BZA8 1340 aa15.33■□□□□ 0.04
YBX3-213ENST00000542641 PARP4Q9UKK3 1724 aaKnown RBP15.32■□□□□ 0.04
YBX3-213ENST00000542641 C1orf141Q5JVX7 400 aa15.32■□□□□ 0.04
YBX3-213ENST00000542641 TNS2Q63HR2 1409 aa15.32■□□□□ 0.04
YBX3-213ENST00000542641 THSD7AQ9UPZ6 1657 aa15.32■□□□□ 0.04
YBX3-213ENST00000542641 CYP27B1O15528 508 aa15.31■□□□□ 0.04
YBX3-213ENST00000542641 NFE2L2Q16236 605 aa15.31■□□□□ 0.04
YBX3-213ENST00000542641 KRT27Q7Z3Y8 459 aa15.31■□□□□ 0.04
YBX3-213ENST00000542641 IFNL2Q8IZJ0 200 aa15.31■□□□□ 0.04
YBX3-213ENST00000542641 RGS12O14924 1447 aa15.31■□□□□ 0.04
YBX3-213ENST00000542641 APAF1O14727 1248 aa15.3■□□□□ 0.04
YBX3-213ENST00000542641 PHKG2P15735 406 aa15.3■□□□□ 0.04
YBX3-213ENST00000542641 MARCH10Q8NA82 808 aaPredicted RBP15.3■□□□□ 0.04
YBX3-213ENST00000542641 WNK3Q9BYP7 1800 aa15.3■□□□□ 0.04
YBX3-213ENST00000542641 LRRC37A3O60309 1634 aa15.29■□□□□ 0.04
YBX3-213ENST00000542641 TMPOP42166 694 aaKnown RBP15.29■□□□□ 0.04
YBX3-213ENST00000542641 NEUROD2Q15784 382 aa15.29■□□□□ 0.04
YBX3-213ENST00000542641 AKAP4Q5JQC9 854 aa15.29■□□□□ 0.04
YBX3-213ENST00000542641 RRP7AQ9Y3A4 280 aaKnown RBP15.29■□□□□ 0.04
YBX3-213ENST00000542641 SENP3-EIF4A1A0A087X0R7 540 aa15.28■□□□□ 0.04
YBX3-213ENST00000542641 GNAT3A8MTJ3 354 aa15.28■□□□□ 0.04
YBX3-213ENST00000542641 RIPK4P57078 832 aa15.28■□□□□ 0.04
YBX3-213ENST00000542641 FAM182BQ5T319 152 aa15.28■□□□□ 0.04
YBX3-213ENST00000542641 PKD1L3Q7Z443 1732 aa15.27■□□□□ 0.04
YBX3-213ENST00000542641 HSP90AB1P08238 724 aaKnown RBP15.27■□□□□ 0.04
YBX3-213ENST00000542641 RTF1Q92541 710 aaKnown RBP15.27■□□□□ 0.04
YBX3-213ENST00000542641 MAP3K5Q99683 1374 aa15.26■□□□□ 0.03
YBX3-213ENST00000542641 NKX1-1Q15270 411 aaPredicted RBP15.26■□□□□ 0.03
YBX3-213ENST00000542641 MPRIPQ6WCQ1 1025 aa15.26■□□□□ 0.03
YBX3-213ENST00000542641 DCAF5Q96JK2 942 aa15.26■□□□□ 0.03
YBX3-213ENST00000542641 DSG3P32926 999 aa15.25■□□□□ 0.03
YBX3-213ENST00000542641 HTATSF1O43719 755 aaKnown RBP15.24■□□□□ 0.03
YBX3-213ENST00000542641 LMOD3Q0VAK6 560 aa15.24■□□□□ 0.03
YBX3-213ENST00000542641 FAM196AQ6ZSG2 479 aa15.24■□□□□ 0.03
YBX3-213ENST00000542641 LGR6Q9HBX8 967 aa15.24■□□□□ 0.03
YBX3-213ENST00000542641 SALL2Q9Y467 1007 aaPredicted RBP15.24■□□□□ 0.03
YBX3-213ENST00000542641 RNMTO43148 476 aaKnown RBP15.23■□□□□ 0.03
YBX3-213ENST00000542641 DCTN1Q14203 1278 aa15.23■□□□□ 0.03
YBX3-213ENST00000542641 MCM10Q7L590 875 aa15.23■□□□□ 0.03
YBX3-213ENST00000542641 IL17REQ8NFR9 667 aa15.23■□□□□ 0.03
YBX3-213ENST00000542641 SHANK3Q9BYB0 1731 aa15.23■□□□□ 0.03
YBX3-213ENST00000542641 BRWD3Q6RI45 1802 aa15.22■□□□□ 0.03
YBX3-213ENST00000542641 NGEFQ8N5V2 710 aa15.22■□□□□ 0.03
YBX3-213ENST00000542641 ACSBG1Q96GR2 724 aa15.22■□□□□ 0.03
YBX3-213ENST00000542641 TRIM35Q9UPQ4 493 aa15.22■□□□□ 0.03
YBX3-213ENST00000542641 KDM6AO15550 1401 aaPredicted RBP15.21■□□□□ 0.03
YBX3-213ENST00000542641 ERVV-2B6SEH9 535 aa15.21■□□□□ 0.03
YBX3-213ENST00000542641 SYTL4Q96C24 671 aaPredicted RBP15.21■□□□□ 0.03
YBX3-213ENST00000542641 BCL9O00512 1426 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms