RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 NFATC2IPQ8NCF5 419 aa6.36□□□□□ -1.39
USP28-210ENST00000542033 AGBL1Q96MI9 1066 aa6.36□□□□□ -1.39
USP28-210ENST00000542033 CCDC85AQ96PX6 553 aaPredicted RBP6.36□□□□□ -1.39
USP28-210ENST00000542033 ARID3CA6NKF2 412 aa6.35□□□□□ -1.39
USP28-210ENST00000542033 TTLL8A6PVC2 850 aa6.35□□□□□ -1.39
USP28-210ENST00000542033 SUPT5HO00267 1087 aaKnown RBP6.35□□□□□ -1.39
USP28-210ENST00000542033 LZTS3O60299 673 aaPredicted RBP6.35□□□□□ -1.39
USP28-210ENST00000542033 MAN1A2O60476 641 aa6.35□□□□□ -1.39
USP28-210ENST00000542033 SNRPBP14678 240 aaKnown RBP6.35□□□□□ -1.39
USP28-210ENST00000542033 ADD1P35611 737 aaKnown RBP6.35□□□□□ -1.39
USP28-210ENST00000542033 OXLD1Q5BKU9 147 aa6.35□□□□□ -1.39
USP28-210ENST00000542033 CHIC2Q9UKJ5 165 aa6.35□□□□□ -1.39
USP28-210ENST00000542033 SOS2Q07890 1332 aaPredicted RBP6.34□□□□□ -1.39
USP28-210ENST00000542033 SKIP12755 728 aa6.34□□□□□ -1.39
USP28-210ENST00000542033 ADAMTS19Q8TE59 1207 aa6.34□□□□□ -1.39
USP28-210ENST00000542033 ZNF395Q9H8N7 513 aaPredicted RBP6.34□□□□□ -1.39
USP28-210ENST00000542033 POLMQ9NP87 494 aaPredicted RBP6.34□□□□□ -1.39
USP28-210ENST00000542033 GNRH1P01148 92 aa6.33□□□□□ -1.4
USP28-210ENST00000542033 SCTRP47872 440 aa6.33□□□□□ -1.4
USP28-210ENST00000542033 EML3Q32P44 896 aa6.33□□□□□ -1.4
USP28-210ENST00000542033 TREML4Q6UXN2 200 aa6.33□□□□□ -1.4
USP28-210ENST00000542033 CCDC97Q96F63 343 aaPredicted RBP6.33□□□□□ -1.4
USP28-210ENST00000542033 CDCA7Q9BWT1 371 aaPredicted RBP6.33□□□□□ -1.4
USP28-210ENST00000542033 OSBPL3Q9H4L5 887 aa6.33□□□□□ -1.4
USP28-210ENST00000542033 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.32□□□□□ -1.4
USP28-210ENST00000542033 ESCO1Q5FWF5 840 aa6.32□□□□□ -1.4
USP28-210ENST00000542033 NLRP3Q96P20 1036 aa6.32□□□□□ -1.4
USP28-210ENST00000542033 INSM2Q96T92 566 aaPredicted RBP6.32□□□□□ -1.4
USP28-210ENST00000542033 MEN1O00255 615 aa6.31□□□□□ -1.4
USP28-210ENST00000542033 PIK3CDO00329 1044 aa6.31□□□□□ -1.4
USP28-210ENST00000542033 GPC1P35052 558 aa6.31□□□□□ -1.4
USP28-210ENST00000542033 CLN3Q13286 438 aa6.31□□□□□ -1.4
USP28-210ENST00000542033 SERPINA10Q9UK55 444 aa6.31□□□□□ -1.4
USP28-210ENST00000542033 NOD1Q9Y239 953 aa6.31□□□□□ -1.4
USP28-210ENST00000542033 A0A1W2PRU2 124 aa6.3□□□□□ -1.4
USP28-210ENST00000542033 USP17L5A8MUK1 530 aa6.3□□□□□ -1.4
USP28-210ENST00000542033 ATP9BO43861 1147 aa6.3□□□□□ -1.4
USP28-210ENST00000542033 CTSOP43234 321 aaPredicted RBP6.3□□□□□ -1.4
USP28-210ENST00000542033 TSGA10IPQ3SY00 556 aa6.3□□□□□ -1.4
USP28-210ENST00000542033 KDF1Q8NAX2 398 aaPredicted RBP6.3□□□□□ -1.4
USP28-210ENST00000542033 ARHGEF10LQ9HCE6 1279 aa6.3□□□□□ -1.4
USP28-210ENST00000542033 DNMT3LQ9UJW3 386 aa6.3□□□□□ -1.4
USP28-210ENST00000542033 FIGNL2A6NMB9 653 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 GTF2E1P29083 439 aaPredicted RBP6.29□□□□□ -1.4
USP28-210ENST00000542033 RNF144AP50876 292 aaPredicted RBP6.29□□□□□ -1.4
USP28-210ENST00000542033 TBC1D9Q6ZT07 1266 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 TRIM50Q86XT4 487 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 PLEKHM2Q8IWE5 1019 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 NPAS3Q8IXF0 933 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 UCN2Q96RP3 112 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 PPP1R12CQ9BZL4 782 aa6.29□□□□□ -1.4
USP28-210ENST00000542033 TFIP11Q9UBB9 837 aaKnown RBP6.29□□□□□ -1.4
USP28-210ENST00000542033 NXF1Q9UBU9 619 aaKnown RBP6.29□□□□□ -1.4
USP28-210ENST00000542033 USP17L3A6NCW0 530 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 USP17L4A6NCW7 530 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 PALM3A6NDB9 673 aaPredicted RBP6.28□□□□□ -1.4
USP28-210ENST00000542033 SOBPA7XYQ1 873 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 NCOA4Q13772 614 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 SLC27A3Q5K4L6 730 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 LCE2AQ5TA79 106 aaPredicted RBP6.28□□□□□ -1.4
USP28-210ENST00000542033 FOXD4L5Q5VV16 416 aaPredicted RBP6.28□□□□□ -1.4
USP28-210ENST00000542033 USP17L2Q6R6M4 530 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 USP17L1Q7RTZ2 530 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 LYSMD3Q7Z3D4 306 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 CCDC82Q8N4S0 544 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 RNF217Q8TC41 542 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 SLC16A10Q8TF71 515 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 ESYT1Q9BSJ8 1104 aa6.28□□□□□ -1.4
USP28-210ENST00000542033 ATP1A2P50993 1020 aa6.27□□□□□ -1.41
USP28-210ENST00000542033 GTF2IP78347 998 aa6.27□□□□□ -1.41
USP28-210ENST00000542033 CNKSR1Q969H4 720 aa6.27□□□□□ -1.41
USP28-210ENST00000542033 C1orf115Q9H7X2 142 aa6.27□□□□□ -1.41
USP28-210ENST00000542033 RAB6BQ9NRW1 208 aa6.27□□□□□ -1.41
USP28-210ENST00000542033 TERTO14746 1132 aaKnown RBP6.26□□□□□ -1.41
USP28-210ENST00000542033 LMOD1P29536 600 aaPredicted RBP6.26□□□□□ -1.41
USP28-210ENST00000542033 GDF10P55107 478 aa6.26□□□□□ -1.41
USP28-210ENST00000542033 PSME1Q06323 249 aa6.26□□□□□ -1.41
USP28-210ENST00000542033 DEPDC4Q8N2C3 294 aa6.26□□□□□ -1.41
USP28-210ENST00000542033 XAGE2Q96GT9 111 aa6.26□□□□□ -1.41
USP28-210ENST00000542033 ARID3AQ99856 593 aa6.26□□□□□ -1.41
USP28-210ENST00000542033 MAFBQ9Y5Q3 323 aaPredicted RBP6.26□□□□□ -1.41
USP28-210ENST00000542033 WASLO00401 505 aaPredicted RBP6.25□□□□□ -1.41
USP28-210ENST00000542033 IL2RAP01589 272 aa6.25□□□□□ -1.41
USP28-210ENST00000542033 RFX1P22670 979 aa6.25□□□□□ -1.41
USP28-210ENST00000542033 PTSQ03393 145 aa6.25□□□□□ -1.41
USP28-210ENST00000542033 PRICKLE2Q7Z3G6 844 aa6.25□□□□□ -1.41
USP28-210ENST00000542033 ZSCAN10Q96SZ4 725 aaPredicted RBP6.25□□□□□ -1.41
USP28-210ENST00000542033 ETNK1Q9HBU6 452 aa6.25□□□□□ -1.41
USP28-210ENST00000542033 RBM19Q9Y4C8 960 aaKnown RBP6.25□□□□□ -1.41
USP28-210ENST00000542033 BACH1O14867 736 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 WFS1O76024 890 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 INHAP05111 366 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 CENPCQ03188 943 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 TLR1Q15399 786 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 GNASQ5JWF2 1037 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 TMEM214Q6NUQ4 689 aaKnown RBP6.24□□□□□ -1.41
USP28-210ENST00000542033 GRIP2Q9C0E4 1043 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 MKRN1Q9UHC7 482 aaKnown RBP6.24□□□□□ -1.41
USP28-210ENST00000542033 PCDHGA11Q9Y5H2 935 aa6.24□□□□□ -1.41
USP28-210ENST00000542033 SPATA31C2B4DYI2 1134 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms