RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 SPATA31A6Q5VVP1 1343 aa14.05□□□□□ -0.16
LEMD3-202ENST00000539442 AEBP1Q8IUX7 1158 aa14.04□□□□□ -0.16
LEMD3-202ENST00000539442 COL5A2P05997 1499 aaPredicted RBP14.04□□□□□ -0.16
LEMD3-202ENST00000539442 FAM83GA6ND36 823 aa14.03□□□□□ -0.16
LEMD3-202ENST00000539442 CCDC27Q2M243 656 aa14.03□□□□□ -0.16
LEMD3-202ENST00000539442 NBPF6Q5VWK0 638 aa14.03□□□□□ -0.16
LEMD3-202ENST00000539442 NBPF4Q96M43 638 aa14.03□□□□□ -0.16
LEMD3-202ENST00000539442 ATF5Q9Y2D1 282 aaPredicted RBP14.03□□□□□ -0.16
LEMD3-202ENST00000539442 PLEKHG2Q9H7P9 1386 aa14.03□□□□□ -0.16
LEMD3-202ENST00000539442 WDR17Q8IZU2 1322 aa14.02□□□□□ -0.17
LEMD3-202ENST00000539442 CSB-PGBD3P0DP91 1061 aa14.02□□□□□ -0.17
LEMD3-202ENST00000539442 HSPA1LP34931 641 aa14.02□□□□□ -0.17
LEMD3-202ENST00000539442 TMPOP42166 694 aaKnown RBP14.02□□□□□ -0.17
LEMD3-202ENST00000539442 PDE3BQ13370 1112 aa14.02□□□□□ -0.17
LEMD3-202ENST00000539442 RGPD5Q99666 1765 aa14.01□□□□□ -0.17
LEMD3-202ENST00000539442 ZNF521Q96K83 1311 aa14.01□□□□□ -0.17
LEMD3-202ENST00000539442 NFE2L2Q16236 605 aa14.01□□□□□ -0.17
LEMD3-202ENST00000539442 PHACTR3Q96KR7 559 aa14□□□□□ -0.17
LEMD3-202ENST00000539442 NLRP2Q9NX02 1062 aa14□□□□□ -0.17
LEMD3-202ENST00000539442 NUTM2BA6NNL0 878 aaPredicted RBP13.99□□□□□ -0.17
LEMD3-202ENST00000539442 NUTM2EB1AL46 878 aaPredicted RBP13.99□□□□□ -0.17
LEMD3-202ENST00000539442 ZBTB22O15209 634 aa13.99□□□□□ -0.17
LEMD3-202ENST00000539442 LMOD3Q0VAK6 560 aa13.99□□□□□ -0.17
LEMD3-202ENST00000539442 NUTM2AQ8IVF1 878 aaPredicted RBP13.99□□□□□ -0.17
LEMD3-202ENST00000539442 USHBP1Q8N6Y0 703 aa13.99□□□□□ -0.17
LEMD3-202ENST00000539442 GAS2L2Q8NHY3 880 aa13.99□□□□□ -0.17
LEMD3-202ENST00000539442 SALL2Q9Y467 1007 aaPredicted RBP13.99□□□□□ -0.17
LEMD3-202ENST00000539442 ADAMTS2O95450 1211 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 CD44P16070 742 aaKnown RBP13.98□□□□□ -0.17
LEMD3-202ENST00000539442 RIPK4P57078 832 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 EVA1CP58658 441 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 CHADLQ6NUI6 762 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 WWC1Q8IX03 1113 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 OTUD5Q96G74 571 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 CARD10Q9BWT7 1032 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 BTG4Q9NY30 223 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 RRP7AQ9Y3A4 280 aaKnown RBP13.98□□□□□ -0.17
LEMD3-202ENST00000539442 CRB1P82279 1406 aa13.98□□□□□ -0.17
LEMD3-202ENST00000539442 RGPD2P0DJD1 1756 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 SLIT2O94813 1529 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 SENP3-EIF4A1A0A087X0R7 540 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 NEUROD2Q15784 382 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 TOM1L2Q6ZVM7 507 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 WDR63Q8IWG1 891 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 PLCH1Q4KWH8 1693 aa13.97□□□□□ -0.17
LEMD3-202ENST00000539442 NWD2Q9ULI1 1742 aa13.96□□□□□ -0.17
LEMD3-202ENST00000539442 GOLGA2Q08379 1002 aa13.96□□□□□ -0.17
LEMD3-202ENST00000539442 AMOTQ4VCS5 1084 aa13.96□□□□□ -0.17
LEMD3-202ENST00000539442 RAPGEF4Q8WZA2 1011 aa13.96□□□□□ -0.17
LEMD3-202ENST00000539442 STRN4Q9NRL3 753 aa13.96□□□□□ -0.17
LEMD3-202ENST00000539442 LRP6O75581 1613 aa13.95□□□□□ -0.18
LEMD3-202ENST00000539442 TATP17735 454 aaPredicted RBP13.95□□□□□ -0.18
LEMD3-202ENST00000539442 MTHFSDQ2M296 383 aaKnown RBP13.95□□□□□ -0.18
LEMD3-202ENST00000539442 PLEKHO1Q53GL0 409 aaPredicted RBP13.95□□□□□ -0.18
LEMD3-202ENST00000539442 LARP1Q6PKG0 1096 aaKnown RBP13.95□□□□□ -0.18
LEMD3-202ENST00000539442 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.95□□□□□ -0.18
LEMD3-202ENST00000539442 TRIM35Q9UPQ4 493 aa13.95□□□□□ -0.18
LEMD3-202ENST00000539442 HTATSF1O43719 755 aaKnown RBP13.94□□□□□ -0.18
LEMD3-202ENST00000539442 CALD1Q05682 793 aaKnown RBP13.94□□□□□ -0.18
LEMD3-202ENST00000539442 NRAPQ86VF7 1730 aa13.94□□□□□ -0.18
LEMD3-202ENST00000539442 IL16Q14005 1332 aa13.93□□□□□ -0.18
LEMD3-202ENST00000539442 E9PSI1 815 aa13.93□□□□□ -0.18
LEMD3-202ENST00000539442 MEGF6O75095 1541 aa13.93□□□□□ -0.18
LEMD3-202ENST00000539442 OVOS2A0A0G2JMS6 1433 aa13.92□□□□□ -0.18
LEMD3-202ENST00000539442 FNBP4Q8N3X1 1017 aaPredicted RBP13.92□□□□□ -0.18
LEMD3-202ENST00000539442 FBXO41Q8TF61 875 aa13.92□□□□□ -0.18
LEMD3-202ENST00000539442 MAP3K5Q99683 1374 aa13.92□□□□□ -0.18
LEMD3-202ENST00000539442 PARP4Q9UKK3 1724 aaKnown RBP13.91□□□□□ -0.18
LEMD3-202ENST00000539442 GNAT3A8MTJ3 354 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 IL2RBP14784 551 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 SLFN5Q08AF3 891 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 AKAP4Q5JQC9 854 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 RTF1Q92541 710 aaKnown RBP13.91□□□□□ -0.18
LEMD3-202ENST00000539442 NGLY1Q96IV0 654 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 C8orf37Q96NL8 207 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 SPG7Q9UQ90 795 aa13.91□□□□□ -0.18
LEMD3-202ENST00000539442 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
LEMD3-202ENST00000539442 MEX3CQ5U5Q3 659 aaKnown RBP13.9□□□□□ -0.18
LEMD3-202ENST00000539442 ZNF530Q6P9A1 599 aaPredicted RBP13.9□□□□□ -0.18
LEMD3-202ENST00000539442 UNC5CLQ8IV45 518 aa13.9□□□□□ -0.18
LEMD3-202ENST00000539442 TRMT2AQ8IZ69 625 aaKnown RBP13.9□□□□□ -0.18
LEMD3-202ENST00000539442 CDCA7LQ96GN5 454 aa13.9□□□□□ -0.18
LEMD3-202ENST00000539442 MYH16Q9H6N6 1097 aa13.9□□□□□ -0.18
LEMD3-202ENST00000539442 PKD1L3Q7Z443 1732 aa13.9□□□□□ -0.18
LEMD3-202ENST00000539442 DISP2A7MBM2 1401 aa13.9□□□□□ -0.19
LEMD3-202ENST00000539442 BCL9LQ86UU0 1499 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 C1orf141Q5JVX7 400 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 DUSP27Q5VZP5 1158 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 CDCA7Q9BWT1 371 aaPredicted RBP13.89□□□□□ -0.19
LEMD3-202ENST00000539442 DLG5Q8TDM6 1919 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.89□□□□□ -0.19
LEMD3-202ENST00000539442 SPATA31A1Q5TZJ5 1347 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 SPATA31A5Q5VU36 1347 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 SPATA31A7Q8IWB4 1347 aa13.89□□□□□ -0.19
LEMD3-202ENST00000539442 VPS72Q15906 364 aa13.88□□□□□ -0.19
LEMD3-202ENST00000539442 IFT57Q9NWB7 429 aa13.87□□□□□ -0.19
LEMD3-202ENST00000539442 PCDH11XQ9BZA7 1347 aa13.87□□□□□ -0.19
LEMD3-202ENST00000539442 PCDH11YQ9BZA8 1340 aa13.87□□□□□ -0.19
LEMD3-202ENST00000539442 LRRC37A3O60309 1634 aa13.86□□□□□ -0.19
LEMD3-202ENST00000539442 CEMIPQ8WUJ3 1361 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms