RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SRLQ86TD4 932 aa14.84□□□□□ -0.03
USP3-203ENST00000538686 RUNDC1Q96C34 613 aa14.84□□□□□ -0.03
USP3-203ENST00000538686 PTPRCP08575 1304 aa14.84□□□□□ -0.03
USP3-203ENST00000538686 KIF2AO00139 706 aaPredicted RBP14.83□□□□□ -0.03
USP3-203ENST00000538686 ZSCAN26Q16670 478 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 NBPF20Q3BBV1 942 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.83□□□□□ -0.03
USP3-203ENST00000538686 EGFL6Q8IUX8 553 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 IQUBQ8NA54 791 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 CCDC191Q8NCU4 936 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 BCL2L13Q9BXK5 485 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 MED4Q9NPJ6 270 aa14.83□□□□□ -0.03
USP3-203ENST00000538686 LRRFIP2Q9Y608 721 aaKnown RBP14.83□□□□□ -0.03
USP3-203ENST00000538686 RNF17Q9BXT8 1623 aaKnown RBP14.83□□□□□ -0.04
USP3-203ENST00000538686 H2AFXP16104 143 aaPredicted RBP14.83□□□□□ -0.04
USP3-203ENST00000538686 MCCP23508 829 aa14.83□□□□□ -0.04
USP3-203ENST00000538686 TPD52L1Q16890 204 aaPredicted RBP14.83□□□□□ -0.04
USP3-203ENST00000538686 SWT1Q5T5J6 900 aaKnown RBP14.83□□□□□ -0.04
USP3-203ENST00000538686 ATF7IPQ6VMQ6 1270 aa14.83□□□□□ -0.04
USP3-203ENST00000538686 INTS4Q96HW7 963 aaKnown RBP14.83□□□□□ -0.04
USP3-203ENST00000538686 AK7Q96M32 723 aa14.83□□□□□ -0.04
USP3-203ENST00000538686 SLU7O95391 586 aaKnown RBP14.82□□□□□ -0.04
USP3-203ENST00000538686 SUGP1Q8IWZ8 645 aaKnown RBP14.82□□□□□ -0.04
USP3-203ENST00000538686 FBXO18Q8NFZ0 1043 aa14.82□□□□□ -0.04
USP3-203ENST00000538686 USP26Q9BXU7 913 aa14.82□□□□□ -0.04
USP3-203ENST00000538686 PRR29P0C7W0 189 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 MAGEA9P43362 315 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 MLECQ14165 292 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 NAA30Q147X3 362 aaPredicted RBP14.81□□□□□ -0.04
USP3-203ENST00000538686 RPAINQ86UA6 219 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 ARGLU1Q9NWB6 273 aaPredicted RBP14.81□□□□□ -0.04
USP3-203ENST00000538686 PSD3Q9NYI0 1048 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 ZNF215Q9UL58 517 aaPredicted RBP14.81□□□□□ -0.04
USP3-203ENST00000538686 PLEKHG2Q9H7P9 1386 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 IVLP07476 585 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 TRIM27P14373 513 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 HAP1P54257 671 aaPredicted RBP14.81□□□□□ -0.04
USP3-203ENST00000538686 INTS3Q68E01 1043 aaKnown RBP14.81□□□□□ -0.04
USP3-203ENST00000538686 CASC1Q6TDU7 716 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 TMX1Q9H3N1 280 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 ST7Q9NRC1 585 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 RRP15Q9Y3B9 282 aaKnown RBP14.81□□□□□ -0.04
USP3-203ENST00000538686 FHOD1Q9Y613 1164 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 PBRM1Q86U86 1689 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 ELP1O95163 1332 aa14.81□□□□□ -0.04
USP3-203ENST00000538686 NEMFO60524 1076 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 GSCP56915 257 aaPredicted RBP14.8□□□□□ -0.04
USP3-203ENST00000538686 SRPK2P78362 688 aaKnown RBP14.8□□□□□ -0.04
USP3-203ENST00000538686 PLCB2Q00722 1185 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 NFATC2IPQ8NCF5 419 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 WDR62O43379 1518 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 IPO8O15397 1037 aaKnown RBP14.8□□□□□ -0.04
USP3-203ENST00000538686 PTGS1P23219 599 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 CALRP27797 417 aaKnown RBP14.8□□□□□ -0.04
USP3-203ENST00000538686 ELF2Q15723 593 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 GPATCH11Q8N954 259 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 SPC24Q8NBT2 197 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 NEK11Q8NG66 645 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 FUCA2Q9BTY2 467 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 RAI14Q9P0K7 980 aa14.8□□□□□ -0.04
USP3-203ENST00000538686 CDK13Q14004 1512 aaKnown RBP14.79□□□□□ -0.04
USP3-203ENST00000538686 UBE2HP62256 183 aa14.79□□□□□ -0.04
USP3-203ENST00000538686 CXorf56Q9H5V9 222 aa14.79□□□□□ -0.04
USP3-203ENST00000538686 RBM28Q9NW13 759 aaKnown RBP14.79□□□□□ -0.04
USP3-203ENST00000538686 WDR33Q9C0J8 1336 aaKnown RBP14.79□□□□□ -0.04
USP3-203ENST00000538686 TRIM66O15016 1216 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 PNMA6AP0CW24 399 aaPredicted RBP14.78□□□□□ -0.04
USP3-203ENST00000538686 CUL4AQ13619 759 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 ANKRD45Q5TZF3 282 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 RTF1Q92541 710 aaKnown RBP14.78□□□□□ -0.04
USP3-203ENST00000538686 TRDNQ13061 729 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 USP48Q86UV5 1035 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 PPM1EQ8WY54 764 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 SHANK2Q9UPX8 1470 aa14.78□□□□□ -0.04
USP3-203ENST00000538686 CCDC192P0DO97 292 aa14.77□□□□□ -0.04
USP3-203ENST00000538686 PLA2G4AP47712 749 aa14.77□□□□□ -0.04
USP3-203ENST00000538686 GYS2P54840 703 aa14.77□□□□□ -0.04
USP3-203ENST00000538686 GTF3C6Q969F1 213 aa14.77□□□□□ -0.04
USP3-203ENST00000538686 ADGRL1O94910 1474 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 A2MP01023 1474 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 U2SURPO15042 1029 aaKnown RBP14.77□□□□□ -0.05
USP3-203ENST00000538686 TDO2P48775 406 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 PTPN14Q15678 1187 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 ZSCAN25Q6NSZ9 544 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 FILIP1Q7Z7B0 1213 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 EXOC4Q96A65 974 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 DRC1Q96MC2 740 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 CEP89Q96ST8 783 aa14.77□□□□□ -0.05
USP3-203ENST00000538686 ABCC11Q96J66 1382 aa14.76□□□□□ -0.05
USP3-203ENST00000538686 MYOM1P52179 1685 aa14.76□□□□□ -0.05
USP3-203ENST00000538686 CCDC186Q7Z3E2 898 aa14.76□□□□□ -0.05
USP3-203ENST00000538686 FAM200AQ8TCP9 573 aa14.76□□□□□ -0.05
USP3-203ENST00000538686 CCDC196A0A1B0GTZ2 297 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 GADD45BO75293 160 aaPredicted RBP14.75□□□□□ -0.05
USP3-203ENST00000538686 TUBB4AP04350 444 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 ATP6V1AP38606 617 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 MCTP2Q6DN12 878 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 TMCO3Q6UWJ1 677 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 TCP11L2Q8N4U5 519 aa14.75□□□□□ -0.05
USP3-203ENST00000538686 TOMM22Q9NS69 142 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms