RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 COL3A1P02461 1466 aaPredicted RBP30.69■■■□□ 2.5
SFSWAP-204ENST00000535399 DIAPH1O60610 1272 aaKnown RBP30.67■■■□□ 2.5
SFSWAP-204ENST00000535399 AEBP1Q8IUX7 1158 aa30.66■■■□□ 2.5
SFSWAP-204ENST00000535399 RGPD1P0DJD0 1748 aa30.66■■■□□ 2.5
SFSWAP-204ENST00000535399 BAG6P46379 1132 aa30.65■■■□□ 2.5
SFSWAP-204ENST00000535399 PTF1AQ7RTS3 328 aa30.65■■■□□ 2.5
SFSWAP-204ENST00000535399 SULT6B1Q6IMI4 303 aa30.64■■■□□ 2.5
SFSWAP-204ENST00000535399 BCL11BQ9C0K0 894 aaPredicted RBP30.64■■■□□ 2.5
SFSWAP-204ENST00000535399 TNS1Q9HBL0 1735 aaKnown RBP30.64■■■□□ 2.5
SFSWAP-204ENST00000535399 APBA3O96018 575 aa30.63■■■□□ 2.49
SFSWAP-204ENST00000535399 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.63■■■□□ 2.49
SFSWAP-204ENST00000535399 SHANK3Q9BYB0 1731 aa30.63■■■□□ 2.49
SFSWAP-204ENST00000535399 PCDH11XQ9BZA7 1347 aa30.63■■■□□ 2.49
SFSWAP-204ENST00000535399 PCDH11YQ9BZA8 1340 aa30.63■■■□□ 2.49
SFSWAP-204ENST00000535399 KDRP35968 1356 aa30.63■■■□□ 2.49
SFSWAP-204ENST00000535399 PLEKHG2Q9H7P9 1386 aa30.62■■■□□ 2.49
SFSWAP-204ENST00000535399 CYP27B1O15528 508 aa30.61■■■□□ 2.49
SFSWAP-204ENST00000535399 KCNQ2O43526 872 aa30.61■■■□□ 2.49
SFSWAP-204ENST00000535399 EN1Q05925 392 aaPredicted RBP30.61■■■□□ 2.49
SFSWAP-204ENST00000535399 ACSBG1Q96GR2 724 aa30.61■■■□□ 2.49
SFSWAP-204ENST00000535399 CFAP53Q96M91 514 aa30.61■■■□□ 2.49
SFSWAP-204ENST00000535399 SPG7Q9UQ90 795 aa30.61■■■□□ 2.49
SFSWAP-204ENST00000535399 RALBP1Q15311 655 aa30.6■■■□□ 2.49
SFSWAP-204ENST00000535399 PKD1L3Q7Z443 1732 aa30.59■■■□□ 2.49
SFSWAP-204ENST00000535399 SBF2Q86WG5 1849 aa30.58■■■□□ 2.49
SFSWAP-204ENST00000535399 CAMKK2Q96RR4 588 aa30.57■■■□□ 2.48
SFSWAP-204ENST00000535399 HMOX1P09601 288 aa30.56■■■□□ 2.48
SFSWAP-204ENST00000535399 EZH2Q15910 746 aaKnown RBP30.54■■■□□ 2.48
SFSWAP-204ENST00000535399 PLEKHO1Q53GL0 409 aaPredicted RBP30.54■■■□□ 2.48
SFSWAP-204ENST00000535399 U2SURPO15042 1029 aaKnown RBP30.53■■■□□ 2.48
SFSWAP-204ENST00000535399 NKX1-1Q15270 411 aaPredicted RBP30.53■■■□□ 2.48
SFSWAP-204ENST00000535399 NHSQ6T4R5 1651 aa30.52■■■□□ 2.48
SFSWAP-204ENST00000535399 PHKG2P15735 406 aa30.52■■■□□ 2.48
SFSWAP-204ENST00000535399 PRIM1P49642 420 aaKnown RBP30.52■■■□□ 2.48
SFSWAP-204ENST00000535399 AMOTQ4VCS5 1084 aa30.52■■■□□ 2.48
SFSWAP-204ENST00000535399 PLSCR1O15162 318 aa30.51■■■□□ 2.47
SFSWAP-204ENST00000535399 IFNL2Q8IZJ0 200 aa30.51■■■□□ 2.47
SFSWAP-204ENST00000535399 NUDCQ9Y266 331 aa30.49■■■□□ 2.47
SFSWAP-204ENST00000535399 PRKRIP1Q9H875 184 aaPredicted RBP30.48■■■□□ 2.47
SFSWAP-204ENST00000535399 MYBBP1AQ9BQG0 1328 aaKnown RBP30.47■■■□□ 2.47
SFSWAP-204ENST00000535399 ZNF530Q6P9A1 599 aaPredicted RBP30.47■■■□□ 2.47
SFSWAP-204ENST00000535399 SYTL4Q96C24 671 aaPredicted RBP30.47■■■□□ 2.47
SFSWAP-204ENST00000535399 DOT1LQ8TEK3 1739 aa30.44■■■□□ 2.46
SFSWAP-204ENST00000535399 U2AF1L5P0DN76 240 aaPredicted RBP30.43■■■□□ 2.46
SFSWAP-204ENST00000535399 U2AF1Q01081 240 aaKnown RBP eCLIP30.43■■■□□ 2.464e-8■□□□□ 9.7
SFSWAP-204ENST00000535399 PROM2Q8N271 834 aa30.43■■■□□ 2.46
SFSWAP-204ENST00000535399 RSPH6AQ9H0K4 717 aa30.42■■■□□ 2.46
SFSWAP-204ENST00000535399 HSP90AB1P08238 724 aaKnown RBP30.4■■■□□ 2.46
SFSWAP-204ENST00000535399 C1orf141Q5JVX7 400 aa30.4■■■□□ 2.46
SFSWAP-204ENST00000535399 BTAF1O14981 1849 aa30.39■■■□□ 2.46
SFSWAP-204ENST00000535399 MTHFSDQ2M296 383 aaKnown RBP30.39■■■□□ 2.46
SFSWAP-204ENST00000535399 TOGARAM1Q9Y4F4 1720 aa30.39■■■□□ 2.45
SFSWAP-204ENST00000535399 KAT6BQ8WYB5 2073 aa30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 RGPD3A6NKT7 1758 aaPredicted RBP30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 RGPD4Q7Z3J3 1758 aa30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 PRKAR2BP31323 418 aa30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 TXNRD1Q16881 649 aa30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 DCAF5Q96JK2 942 aa30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 KDM6AO15550 1401 aaPredicted RBP30.38■■■□□ 2.45
SFSWAP-204ENST00000535399 FCHSD2O94868 740 aa30.37■■■□□ 2.45
SFSWAP-204ENST00000535399 AKAP4Q5JQC9 854 aa30.37■■■□□ 2.45
SFSWAP-204ENST00000535399 MPRIPQ6WCQ1 1025 aa30.37■■■□□ 2.45
SFSWAP-204ENST00000535399 RREB1Q92766 1687 aa30.36■■■□□ 2.45
SFSWAP-204ENST00000535399 PIGBQ92521 554 aa30.36■■■□□ 2.45
SFSWAP-204ENST00000535399 ERVV-2B6SEH9 535 aa30.34■■■□□ 2.45
SFSWAP-204ENST00000535399 PHACTR3Q96KR7 559 aa30.34■■■□□ 2.45
SFSWAP-204ENST00000535399 TMOD3Q9NYL9 352 aa30.33■■■□□ 2.45
SFSWAP-204ENST00000535399 NUP188Q5SRE5 1749 aa30.31■■■□□ 2.44
SFSWAP-204ENST00000535399 GAS2L2Q8NHY3 880 aa30.31■■■□□ 2.44
SFSWAP-204ENST00000535399 LRRC4BQ9NT99 713 aa30.29■■■□□ 2.44
SFSWAP-204ENST00000535399 LGR6Q9HBX8 967 aa30.28■■■□□ 2.44
SFSWAP-204ENST00000535399 SLC27A3Q5K4L6 730 aa30.27■■■□□ 2.44
SFSWAP-204ENST00000535399 NBPF14Q5TI25 921 aa30.27■■■□□ 2.44
SFSWAP-204ENST00000535399 ANO8Q9HCE9 1232 aaPredicted RBP30.27■■■□□ 2.44
SFSWAP-204ENST00000535399 ITGB4P16144 1822 aa30.26■■■□□ 2.44
SFSWAP-204ENST00000535399 RNMTO43148 476 aaKnown RBP30.26■■■□□ 2.43
SFSWAP-204ENST00000535399 CABP4P57796 275 aa30.26■■■□□ 2.43
SFSWAP-204ENST00000535399 SMARCC1Q92922 1105 aaPredicted RBP30.26■■■□□ 2.43
SFSWAP-204ENST00000535399 PLEKHF1Q96S99 279 aa30.26■■■□□ 2.43
SFSWAP-204ENST00000535399 PALLDQ8WX93 1383 aa30.26■■■□□ 2.43
SFSWAP-204ENST00000535399 PSDA5PKW4 1024 aaPredicted RBP30.25■■■□□ 2.43
SFSWAP-204ENST00000535399 R3HDM1Q15032 1099 aaKnown RBP30.25■■■□□ 2.43
SFSWAP-204ENST00000535399 ASAP1Q9ULH1 1129 aa30.25■■■□□ 2.43
SFSWAP-204ENST00000535399 MAP3K5Q99683 1374 aa30.25■■■□□ 2.43
SFSWAP-204ENST00000535399 ANP32CO43423 234 aa30.24■■■□□ 2.43
SFSWAP-204ENST00000535399 KCNQ4P56696 695 aa30.23■■■□□ 2.43
SFSWAP-204ENST00000535399 ATG3Q9NT62 314 aa30.23■■■□□ 2.43
SFSWAP-204ENST00000535399 GNAT3A8MTJ3 354 aa30.22■■■□□ 2.43
SFSWAP-204ENST00000535399 CCNL1Q9UK58 526 aaPredicted RBP30.22■■■□□ 2.43
SFSWAP-204ENST00000535399 NFATC2IPQ8NCF5 419 aa30.21■■■□□ 2.43
SFSWAP-204ENST00000535399 LY75O60449 1722 aa30.2■■■□□ 2.43
SFSWAP-204ENST00000535399 IL17REQ8NFR9 667 aa30.2■■■□□ 2.43
SFSWAP-204ENST00000535399 SLC52A2Q9HAB3 445 aa30.2■■■□□ 2.43
SFSWAP-204ENST00000535399 PNNQ9H307 717 aaKnown RBP30.19■■■□□ 2.42
SFSWAP-204ENST00000535399 ADAMTS7Q9UKP4 1686 aa30.19■■■□□ 2.42
SFSWAP-204ENST00000535399 MRC1P22897 1456 aa30.19■■■□□ 2.42
SFSWAP-204ENST00000535399 PAPPAQ13219 1627 aa30.18■■■□□ 2.42
SFSWAP-204ENST00000535399 WDR43Q15061 677 aaKnown RBP eCLIP30.17■■■□□ 2.42
SFSWAP-204ENST00000535399 CCDC184Q52MB2 194 aa30.17■■■□□ 2.42
SFSWAP-204ENST00000535399 STK32BQ9NY57 414 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms