RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 USHBP1Q8N6Y0 703 aa22.38■■□□□ 1.17
CLSTN3-204ENST00000535313 MEGF6O75095 1541 aa22.37■■□□□ 1.17
CLSTN3-204ENST00000535313 SYTL4Q96C24 671 aaPredicted RBP22.37■■□□□ 1.17
CLSTN3-204ENST00000535313 BTAF1O14981 1849 aa22.36■■□□□ 1.17
CLSTN3-204ENST00000535313 HSPA5P11021 654 aaKnown RBP22.36■■□□□ 1.17
CLSTN3-204ENST00000535313 PPM1GO15355 546 aaPredicted RBP22.35■■□□□ 1.17
CLSTN3-204ENST00000535313 TATP17735 454 aaPredicted RBP22.35■■□□□ 1.17
CLSTN3-204ENST00000535313 PDGFDQ9GZP0 370 aaPredicted RBP22.35■■□□□ 1.17
CLSTN3-204ENST00000535313 EMILIN1Q9Y6C2 1016 aa22.35■■□□□ 1.17
CLSTN3-204ENST00000535313 ZBTB7AO95365 584 aa22.34■■□□□ 1.17
CLSTN3-204ENST00000535313 PRIM1P49642 420 aaKnown RBP22.34■■□□□ 1.17
CLSTN3-204ENST00000535313 CASZ1Q86V15 1759 aa22.33■■□□□ 1.17
CLSTN3-204ENST00000535313 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
CLSTN3-204ENST00000535313 SHANK3Q9BYB0 1731 aa22.29■■□□□ 1.16
CLSTN3-204ENST00000535313 LRRC4BQ9NT99 713 aa22.29■■□□□ 1.16
CLSTN3-204ENST00000535313 ATF5Q9Y2D1 282 aaPredicted RBP22.29■■□□□ 1.16
CLSTN3-204ENST00000535313 WASHC2AQ641Q2 1341 aa22.29■■□□□ 1.16
CLSTN3-204ENST00000535313 PCDH11XQ9BZA7 1347 aa22.29■■□□□ 1.16
CLSTN3-204ENST00000535313 PCDH11YQ9BZA8 1340 aa22.29■■□□□ 1.16
CLSTN3-204ENST00000535313 DOT1LQ8TEK3 1739 aa22.28■■□□□ 1.16
CLSTN3-204ENST00000535313 MTFR1LQ9H019 292 aa22.28■■□□□ 1.16
CLSTN3-204ENST00000535313 PANK3Q9H999 370 aa22.28■■□□□ 1.16
CLSTN3-204ENST00000535313 PAPPAQ13219 1627 aa22.28■■□□□ 1.16
CLSTN3-204ENST00000535313 NSD2O96028 1365 aa22.26■■□□□ 1.15
CLSTN3-204ENST00000535313 TNNT2P45379 298 aaPredicted RBP22.26■■□□□ 1.15
CLSTN3-204ENST00000535313 ZNF827Q17R98 1081 aa22.26■■□□□ 1.15
CLSTN3-204ENST00000535313 POLKQ9UBT6 870 aa22.26■■□□□ 1.15
CLSTN3-204ENST00000535313 DCAF8L1A6NGE4 600 aa22.25■■□□□ 1.15
CLSTN3-204ENST00000535313 PTGER2P43116 358 aa22.25■■□□□ 1.15
CLSTN3-204ENST00000535313 MAP2P11137 1827 aaKnown RBP22.24■■□□□ 1.15
CLSTN3-204ENST00000535313 ANKRD26Q9UPS8 1709 aa22.24■■□□□ 1.15
CLSTN3-204ENST00000535313 AKT1S1Q96B36 256 aa22.23■■□□□ 1.15
CLSTN3-204ENST00000535313 CCNL1Q9UK58 526 aaPredicted RBP22.23■■□□□ 1.15
CLSTN3-204ENST00000535313 KCNQ4P56696 695 aa22.22■■□□□ 1.15
CLSTN3-204ENST00000535313 EYA1Q99502 592 aa22.22■■□□□ 1.15
CLSTN3-204ENST00000535313 SPG7Q9UQ90 795 aa22.22■■□□□ 1.15
CLSTN3-204ENST00000535313 CYP27B1O15528 508 aa22.21■■□□□ 1.15
CLSTN3-204ENST00000535313 TFCP2L1Q9NZI6 479 aa22.21■■□□□ 1.15
CLSTN3-204ENST00000535313 NCAPD2Q15021 1401 aa22.21■■□□□ 1.15
CLSTN3-204ENST00000535313 MPRIPQ6WCQ1 1025 aa22.19■■□□□ 1.14
CLSTN3-204ENST00000535313 LY75O60449 1722 aa22.18■■□□□ 1.14
CLSTN3-204ENST00000535313 EIF4A2Q14240 407 aaKnown RBP22.18■■□□□ 1.14
CLSTN3-204ENST00000535313 SLC16A10Q8TF71 515 aa22.18■■□□□ 1.14
CLSTN3-204ENST00000535313 HMGB2P26583 209 aaKnown RBP22.17■■□□□ 1.14
CLSTN3-204ENST00000535313 MORC1Q86VD1 984 aa22.17■■□□□ 1.14
CLSTN3-204ENST00000535313 SGIP1Q9BQI5 828 aa22.17■■□□□ 1.14
CLSTN3-204ENST00000535313 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.17■■□□□ 1.14
CLSTN3-204ENST00000535313 KNSTRNQ9Y448 316 aa22.17■■□□□ 1.14
CLSTN3-204ENST00000535313 PKD1L3Q7Z443 1732 aa22.17■■□□□ 1.14
CLSTN3-204ENST00000535313 ARXQ96QS3 562 aa22.16■■□□□ 1.14
CLSTN3-204ENST00000535313 PNPLA7Q6ZV29 1317 aa22.15■■□□□ 1.14
CLSTN3-204ENST00000535313 NKX1-1Q15270 411 aaPredicted RBP22.15■■□□□ 1.14
CLSTN3-204ENST00000535313 FHDC1Q9C0D6 1143 aaPredicted RBP22.15■■□□□ 1.14
CLSTN3-204ENST00000535313 PALLDQ8WX93 1383 aa22.14■■□□□ 1.14
CLSTN3-204ENST00000535313 SMARCC1Q92922 1105 aaPredicted RBP22.14■■□□□ 1.13
CLSTN3-204ENST00000535313 QSER1Q2KHR3 1735 aa22.14■■□□□ 1.13
CLSTN3-204ENST00000535313 POLD1P28340 1107 aa22.13■■□□□ 1.13
CLSTN3-204ENST00000535313 SYT17Q9BSW7 474 aa22.13■■□□□ 1.13
CLSTN3-204ENST00000535313 IFNL2Q8IZJ0 200 aa22.12■■□□□ 1.13
CLSTN3-204ENST00000535313 PIGBQ92521 554 aa22.11■■□□□ 1.13
CLSTN3-204ENST00000535313 KIF7Q2M1P5 1343 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 IGSF1Q8N6C5 1336 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 MSH5O43196 834 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 PHKG2P15735 406 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 YY1P25490 414 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 TOGARAM1Q9Y4F4 1720 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 PLEKHG2Q9H7P9 1386 aa22.1■■□□□ 1.13
CLSTN3-204ENST00000535313 TMOD3Q9NYL9 352 aa22.09■■□□□ 1.13
CLSTN3-204ENST00000535313 ITGB4P16144 1822 aa22.08■■□□□ 1.13
CLSTN3-204ENST00000535313 TUBGCP6Q96RT7 1819 aa22.08■■□□□ 1.12
CLSTN3-204ENST00000535313 COL23A1Q86Y22 540 aaPredicted RBP22.07■■□□□ 1.12
CLSTN3-204ENST00000535313 MAP3K5Q99683 1374 aa22.07■■□□□ 1.12
CLSTN3-204ENST00000535313 PLEKHO1Q53GL0 409 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-204ENST00000535313 AMER1Q5JTC6 1135 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-204ENST00000535313 C5P01031 1676 aa22.06■■□□□ 1.12
CLSTN3-204ENST00000535313 HSP90AB1P08238 724 aaKnown RBP22.05■■□□□ 1.12
CLSTN3-204ENST00000535313 KLHL34Q8N239 644 aa22.05■■□□□ 1.12
CLSTN3-204ENST00000535313 FLAD1Q8NFF5 587 aa22.05■■□□□ 1.12
CLSTN3-204ENST00000535313 AMOTQ4VCS5 1084 aa22.04■■□□□ 1.12
CLSTN3-204ENST00000535313 AK7Q96M32 723 aa22.04■■□□□ 1.12
CLSTN3-204ENST00000535313 LOC102724428A0A0B4J2F2 783 aa22.03■■□□□ 1.12
CLSTN3-204ENST00000535313 SIK1P57059 783 aa22.03■■□□□ 1.12
CLSTN3-204ENST00000535313 ZNF530Q6P9A1 599 aaPredicted RBP22.02■■□□□ 1.12
CLSTN3-204ENST00000535313 ASAP1Q9ULH1 1129 aa22.02■■□□□ 1.12
CLSTN3-204ENST00000535313 DCAF5Q96JK2 942 aa22.01■■□□□ 1.11
CLSTN3-204ENST00000535313 TAF1LQ8IZX4 1826 aa22.01■■□□□ 1.11
CLSTN3-204ENST00000535313 COL24A1Q17RW2 1714 aa22■■□□□ 1.11
CLSTN3-204ENST00000535313 ERVV-2B6SEH9 535 aa22■■□□□ 1.11
CLSTN3-204ENST00000535313 SULT6B1Q6IMI4 303 aa22■■□□□ 1.11
CLSTN3-204ENST00000535313 AEBP1Q8IUX7 1158 aa22■■□□□ 1.11
CLSTN3-204ENST00000535313 C4BP0C0L5 1744 aa22■■□□□ 1.11
CLSTN3-204ENST00000535313 IL13P35225 146 aa21.99■■□□□ 1.11
CLSTN3-204ENST00000535313 C1orf141Q5JVX7 400 aa21.99■■□□□ 1.11
CLSTN3-204ENST00000535313 MSL1Q68DK7 614 aa21.99■■□□□ 1.11
CLSTN3-204ENST00000535313 ATG3Q9NT62 314 aa21.99■■□□□ 1.11
CLSTN3-204ENST00000535313 ATP6V1AP38606 617 aa21.98■■□□□ 1.11
CLSTN3-204ENST00000535313 UTRNP46939 3433 aa21.97■■□□□ 1.11
CLSTN3-204ENST00000535313 PER1O15534 1290 aaPredicted RBP21.97■■□□□ 1.11
CLSTN3-204ENST00000535313 PHF14O94880 888 aa21.97■■□□□ 1.11
CLSTN3-204ENST00000535313 MTHFSP49914 203 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms