RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 H7C1W4 665 aa8.08□□□□□ -1.12
USP48-215ENST00000534705 RNF144AP50876 292 aaPredicted RBP8.08□□□□□ -1.12
USP48-215ENST00000534705 ADAM32Q8TC27 787 aa8.08□□□□□ -1.12
USP48-215ENST00000534705 ZNF837Q96EG3 531 aaPredicted RBP8.08□□□□□ -1.12
USP48-215ENST00000534705 LILRA1O75019 489 aa8.07□□□□□ -1.12
USP48-215ENST00000534705 PPP2R2DQ66LE6 453 aa8.07□□□□□ -1.12
USP48-215ENST00000534705 NSFL1CQ9UNZ2 370 aaKnown RBP8.07□□□□□ -1.12
USP48-215ENST00000534705 ERVH48-1M5A8F1 160 aa8.06□□□□□ -1.12
USP48-215ENST00000534705 ADD1P35611 737 aaKnown RBP8.06□□□□□ -1.12
USP48-215ENST00000534705 NR6A1Q15406 480 aa8.06□□□□□ -1.12
USP48-215ENST00000534705 PRICKLE2Q7Z3G6 844 aa8.06□□□□□ -1.12
USP48-215ENST00000534705 DZIP3Q86Y13 1208 aaKnown RBP8.06□□□□□ -1.12
USP48-215ENST00000534705 LRRN4Q8WUT4 740 aa8.06□□□□□ -1.12
USP48-215ENST00000534705 TRERF1Q96PN7 1200 aa8.06□□□□□ -1.12
USP48-215ENST00000534705 POLR3EQ9NVU0 708 aa8.06□□□□□ -1.12
USP48-215ENST00000534705 K7ELQ4 463 aaPredicted RBP8.05□□□□□ -1.12
USP48-215ENST00000534705 PROCP04070 461 aa8.05□□□□□ -1.12
USP48-215ENST00000534705 ITGB2P05107 769 aa8.05□□□□□ -1.12
USP48-215ENST00000534705 GPC1P35052 558 aa8.05□□□□□ -1.12
USP48-215ENST00000534705 KDF1Q8NAX2 398 aaPredicted RBP8.05□□□□□ -1.12
USP48-215ENST00000534705 OCSTAMPQ9BR26 566 aa8.05□□□□□ -1.12
USP48-215ENST00000534705 RAB15P59190 212 aa8.04□□□□□ -1.12
USP48-215ENST00000534705 DBN1Q16643 649 aa8.04□□□□□ -1.12
USP48-215ENST00000534705 RIPOR1Q6ZS17 1223 aa8.04□□□□□ -1.12
USP48-215ENST00000534705 ALYREFQ86V81 257 aaKnown RBP8.04□□□□□ -1.12
USP48-215ENST00000534705 SEPT12Q8IYM1 358 aa8.04□□□□□ -1.12
USP48-215ENST00000534705 ESPNB1AK53 854 aa8.03□□□□□ -1.12
USP48-215ENST00000534705 GPR25O00155 361 aa8.03□□□□□ -1.12
USP48-215ENST00000534705 RHOQP17081 205 aa8.03□□□□□ -1.12
USP48-215ENST00000534705 ACDQ96AP0 544 aa8.03□□□□□ -1.12
USP48-215ENST00000534705 DYRK1BQ9Y463 629 aa8.03□□□□□ -1.12
USP48-215ENST00000534705 MX2P20592 715 aa8.01□□□□□ -1.13
USP48-215ENST00000534705 CCDC125Q86Z20 511 aa8.01□□□□□ -1.13
USP48-215ENST00000534705 GTPBP3Q969Y2 492 aaKnown RBP8.01□□□□□ -1.13
USP48-215ENST00000534705 ATP5J2-PTCD1G3V325 749 aa8□□□□□ -1.13
USP48-215ENST00000534705 OIP5O43482 229 aa8□□□□□ -1.13
USP48-215ENST00000534705 MAP2K3P46734 347 aa7.99□□□□□ -1.13
USP48-215ENST00000534705 GAS2L1Q99501 681 aaPredicted RBP7.99□□□□□ -1.13
USP48-215ENST00000534705 KDM4CQ9H3R0 1056 aa7.99□□□□□ -1.13
USP48-215ENST00000534705 CYLDQ9NQC7 956 aa7.99□□□□□ -1.13
USP48-215ENST00000534705 BAG6P46379 1132 aa7.98□□□□□ -1.13
USP48-215ENST00000534705 SKIV2LQ15477 1246 aaKnown RBP7.98□□□□□ -1.13
USP48-215ENST00000534705 WDR44Q5JSH3 913 aa7.98□□□□□ -1.13
USP48-215ENST00000534705 MKL2Q9ULH7 1088 aa7.98□□□□□ -1.13
USP48-215ENST00000534705 MEN1O00255 615 aa7.97□□□□□ -1.13
USP48-215ENST00000534705 PRKCSHP14314 528 aaPredicted RBP7.97□□□□□ -1.13
USP48-215ENST00000534705 SLC27A3Q5K4L6 730 aa7.97□□□□□ -1.13
USP48-215ENST00000534705 NLRP3Q96P20 1036 aa7.97□□□□□ -1.13
USP48-215ENST00000534705 POU4F2Q12837 409 aa7.96□□□□□ -1.14
USP48-215ENST00000534705 Q8N3U1 123 aa7.96□□□□□ -1.14
USP48-215ENST00000534705 DDRGK1Q96HY6 314 aa7.96□□□□□ -1.14
USP48-215ENST00000534705 CFHR5Q9BXR6 569 aa7.96□□□□□ -1.14
USP48-215ENST00000534705 OXCT2Q9BYC2 517 aaPredicted RBP7.96□□□□□ -1.14
USP48-215ENST00000534705 GPBP1L1Q9HC44 474 aaPredicted RBP7.96□□□□□ -1.14
USP48-215ENST00000534705 A0A1W2PRU2 124 aa7.95□□□□□ -1.14
USP48-215ENST00000534705 AP1G2O75843 785 aa7.95□□□□□ -1.14
USP48-215ENST00000534705 BRPF1P55201 1214 aaPredicted RBP7.95□□□□□ -1.14
USP48-215ENST00000534705 NUCKS1Q9H1E3 243 aaKnown RBP7.95□□□□□ -1.14
USP48-215ENST00000534705 ATP1B4Q9UN42 357 aaPredicted RBP7.95□□□□□ -1.14
USP48-215ENST00000534705 KRBA1A5PL33 1030 aa7.94□□□□□ -1.14
USP48-215ENST00000534705 NEUROD2Q15784 382 aa7.94□□□□□ -1.14
USP48-215ENST00000534705 NBPF10Q6P3W6 841 aaKnown RBP7.94□□□□□ -1.14
USP48-215ENST00000534705 NBPF15Q8N660 670 aa7.94□□□□□ -1.14
USP48-215ENST00000534705 KRTAP4-8Q9BYQ9 185 aa7.94□□□□□ -1.14
USP48-215ENST00000534705 SPATA31C2B4DYI2 1134 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 PIK3R2O00459 728 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 F11P03951 625 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 SH3D19Q5HYK7 790 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.93□□□□□ -1.14
USP48-215ENST00000534705 GRIP2Q9C0E4 1043 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 TIMMDC1Q9NPL8 285 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 GDF2Q9UK05 429 aaPredicted RBP7.93□□□□□ -1.14
USP48-215ENST00000534705 PHF24Q9UPV7 400 aa7.93□□□□□ -1.14
USP48-215ENST00000534705 SNRPNP63162 240 aaKnown RBP7.92□□□□□ -1.14
USP48-215ENST00000534705 CC2D2BQ6DHV5 1058 aa7.92□□□□□ -1.14
USP48-215ENST00000534705 FURINP09958 794 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 ERVK-9P63128 1117 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 RNF20Q5VTR2 975 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 TAS1R3Q7RTX0 852 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 CYP2U1Q7Z449 544 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 EPS8L1Q8TE68 723 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 RRAGCQ9HB90 399 aa7.91□□□□□ -1.14
USP48-215ENST00000534705 CLN3Q13286 438 aa7.9□□□□□ -1.14
USP48-215ENST00000534705 KLRG1Q96E93 195 aa7.9□□□□□ -1.14
USP48-215ENST00000534705 FAM117AQ9C073 453 aa7.9□□□□□ -1.14
USP48-215ENST00000534705 WASLO00401 505 aaPredicted RBP7.89□□□□□ -1.15
USP48-215ENST00000534705 GIGYF1O75420 1035 aaPredicted RBP7.89□□□□□ -1.15
USP48-215ENST00000534705 FBXO31Q5XUX0 539 aaPredicted RBP7.89□□□□□ -1.15
USP48-215ENST00000534705 GOLGA6L1Q8N7Z2 621 aa7.89□□□□□ -1.15
USP48-215ENST00000534705 PROCA1Q8NCQ7 364 aaPredicted RBP7.89□□□□□ -1.15
USP48-215ENST00000534705 EDARADDQ8WWZ3 215 aa7.89□□□□□ -1.15
USP48-215ENST00000534705 PSMG3-AS1Q96PY0 264 aa7.89□□□□□ -1.15
USP48-215ENST00000534705 ESF1Q9H501 851 aaKnown RBP7.89□□□□□ -1.15
USP48-215ENST00000534705 SHISA8B8ZZ34 492 aa7.88□□□□□ -1.15
USP48-215ENST00000534705 USP17L8P0C7I0 530 aa7.88□□□□□ -1.15
USP48-215ENST00000534705 MCCD1P59942 119 aaPredicted RBP7.88□□□□□ -1.15
USP48-215ENST00000534705 LBRQ14739 615 aaKnown RBP7.88□□□□□ -1.15
USP48-215ENST00000534705 GOPCQ9HD26 462 aa7.88□□□□□ -1.15
USP48-215ENST00000534705 COL8A1P27658 744 aa7.87□□□□□ -1.15
USP48-215ENST00000534705 ZNF592Q92610 1267 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms