RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 BCL11BQ9C0K0 894 aaPredicted RBP27.76■■■□□ 2.04
CCS-208ENST00000533244 APBA3O96018 575 aa27.75■■■□□ 2.03
CCS-208ENST00000533244 EN1Q05925 392 aaPredicted RBP27.75■■■□□ 2.03
CCS-208ENST00000533244 PLEKHG2Q9H7P9 1386 aa27.75■■■□□ 2.03
CCS-208ENST00000533244 CAMKK2Q96RR4 588 aa27.75■■■□□ 2.03
CCS-208ENST00000533244 RGPD3A6NKT7 1758 aaPredicted RBP27.75■■■□□ 2.03
CCS-208ENST00000533244 RGPD4Q7Z3J3 1758 aa27.75■■■□□ 2.03
CCS-208ENST00000533244 PARD3Q8TEW0 1356 aa27.74■■■□□ 2.03
CCS-208ENST00000533244 PTF1AQ7RTS3 328 aa27.74■■■□□ 2.03
CCS-208ENST00000533244 DDX54Q8TDD1 881 aaKnown RBP27.74■■■□□ 2.03
CCS-208ENST00000533244 IL13P35225 146 aa27.73■■■□□ 2.03
CCS-208ENST00000533244 RREB1Q92766 1687 aa27.72■■■□□ 2.03
CCS-208ENST00000533244 COL3A1P02461 1466 aaPredicted RBP27.71■■■□□ 2.03
CCS-208ENST00000533244 CNGB1Q14028 1251 aaPredicted RBP27.71■■■□□ 2.03
CCS-208ENST00000533244 EZH2Q15910 746 aaKnown RBP27.7■■■□□ 2.03
CCS-208ENST00000533244 PCDH11XQ9BZA7 1347 aa27.7■■■□□ 2.02
CCS-208ENST00000533244 PCDH11YQ9BZA8 1340 aa27.7■■■□□ 2.02
CCS-208ENST00000533244 KCNQ2O43526 872 aa27.69■■■□□ 2.02
CCS-208ENST00000533244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.69■■■□□ 2.02
CCS-208ENST00000533244 KDRP35968 1356 aa27.69■■■□□ 2.02
CCS-208ENST00000533244 PLSCR1O15162 318 aa27.68■■■□□ 2.02
CCS-208ENST00000533244 DOT1LQ8TEK3 1739 aa27.68■■■□□ 2.02
CCS-208ENST00000533244 ACSBG1Q96GR2 724 aa27.67■■■□□ 2.02
CCS-208ENST00000533244 CYP27B1O15528 508 aa27.67■■■□□ 2.02
CCS-208ENST00000533244 NUP188Q5SRE5 1749 aa27.65■■■□□ 2.02
CCS-208ENST00000533244 BTAF1O14981 1849 aa27.65■■■□□ 2.02
CCS-208ENST00000533244 SPG7Q9UQ90 795 aa27.65■■■□□ 2.02
CCS-208ENST00000533244 AEBP1Q8IUX7 1158 aa27.64■■■□□ 2.02
CCS-208ENST00000533244 DIAPH1O60610 1272 aaKnown RBP27.63■■■□□ 2.01
CCS-208ENST00000533244 PPP2R1AP30153 589 aa27.63■■■□□ 2.01
CCS-208ENST00000533244 DDX10Q13206 875 aaKnown RBP27.63■■■□□ 2.01
CCS-208ENST00000533244 SULT6B1Q6IMI4 303 aa27.61■■■□□ 2.01
CCS-208ENST00000533244 TOGARAM1Q9Y4F4 1720 aa27.6■■■□□ 2.01
CCS-208ENST00000533244 NKX1-1Q15270 411 aaPredicted RBP27.6■■■□□ 2.01
CCS-208ENST00000533244 KAT6BQ8WYB5 2073 aa27.6■■■□□ 2.01
CCS-208ENST00000533244 PRIM1P49642 420 aaKnown RBP27.58■■■□□ 2.01
CCS-208ENST00000533244 PROM2Q8N271 834 aa27.58■■■□□ 2
CCS-208ENST00000533244 PHKG2P15735 406 aa27.57■■■□□ 2
CCS-208ENST00000533244 IFNL2Q8IZJ0 200 aa27.56■■■□□ 2
CCS-208ENST00000533244 AMOTQ4VCS5 1084 aa27.55■■■□□ 2
CCS-208ENST00000533244 PLEKHO1Q53GL0 409 aaPredicted RBP27.55■■■□□ 2
CCS-208ENST00000533244 CFAP53Q96M91 514 aa27.54■■■□□ 2
CCS-208ENST00000533244 TXNRD1Q16881 649 aa27.53■■■□□ 2
CCS-208ENST00000533244 ITGB4P16144 1822 aa27.53■■■□□ 2
CCS-208ENST00000533244 SYTL4Q96C24 671 aaPredicted RBP27.52■■■□□ 2
CCS-208ENST00000533244 HMOX1P09601 288 aa27.51■■□□□ 1.99
CCS-208ENST00000533244 LY75O60449 1722 aa27.5■■□□□ 1.99
CCS-208ENST00000533244 RALBP1Q15311 655 aa27.5■■□□□ 1.99
CCS-208ENST00000533244 ZNF530Q6P9A1 599 aaPredicted RBP27.49■■□□□ 1.99
CCS-208ENST00000533244 PAPPAQ13219 1627 aa27.48■■□□□ 1.99
CCS-208ENST00000533244 U2SURPO15042 1029 aaKnown RBP27.47■■□□□ 1.99
CCS-208ENST00000533244 KDM6AO15550 1401 aaPredicted RBP27.47■■□□□ 1.99
CCS-208ENST00000533244 HSP90AB1P08238 724 aaKnown RBP27.46■■□□□ 1.99
CCS-208ENST00000533244 NBPF14Q5TI25 921 aa27.46■■□□□ 1.99
CCS-208ENST00000533244 PSDA5PKW4 1024 aaPredicted RBP27.45■■□□□ 1.98
CCS-208ENST00000533244 ZNF316A6NFI3 1004 aaPredicted RBP27.45■■□□□ 1.98
CCS-208ENST00000533244 R3HDM1Q15032 1099 aaKnown RBP27.45■■□□□ 1.98
CCS-208ENST00000533244 MPRIPQ6WCQ1 1025 aa27.44■■□□□ 1.98
CCS-208ENST00000533244 DCAF5Q96JK2 942 aa27.44■■□□□ 1.98
CCS-208ENST00000533244 ANO8Q9HCE9 1232 aaPredicted RBP27.44■■□□□ 1.98
CCS-208ENST00000533244 NUDCQ9Y266 331 aa27.44■■□□□ 1.98
CCS-208ENST00000533244 PIGBQ92521 554 aa27.43■■□□□ 1.98
CCS-208ENST00000533244 LRRC4BQ9NT99 713 aa27.43■■□□□ 1.98
CCS-208ENST00000533244 C1orf141Q5JVX7 400 aa27.42■■□□□ 1.98
CCS-208ENST00000533244 SLC27A3Q5K4L6 730 aa27.42■■□□□ 1.98
CCS-208ENST00000533244 RSPH6AQ9H0K4 717 aa27.41■■□□□ 1.98
CCS-208ENST00000533244 ERVV-2B6SEH9 535 aa27.41■■□□□ 1.98
CCS-208ENST00000533244 AKAP4Q5JQC9 854 aa27.41■■□□□ 1.98
CCS-208ENST00000533244 ADAMTS7Q9UKP4 1686 aa27.4■■□□□ 1.98
CCS-208ENST00000533244 SCN11AQ9UI33 1791 aa27.4■■□□□ 1.98
CCS-208ENST00000533244 MTHFSDQ2M296 383 aaKnown RBP27.4■■□□□ 1.98
CCS-208ENST00000533244 TMOD3Q9NYL9 352 aa27.4■■□□□ 1.98
CCS-208ENST00000533244 MYBBP1AQ9BQG0 1328 aaKnown RBP27.39■■□□□ 1.97
CCS-208ENST00000533244 PALLDQ8WX93 1383 aa27.39■■□□□ 1.97
CCS-208ENST00000533244 U2AF1L5P0DN76 240 aaPredicted RBP27.37■■□□□ 1.97
CCS-208ENST00000533244 U2AF1Q01081 240 aaKnown RBP eCLIP27.37■■□□□ 1.97
CCS-208ENST00000533244 SMARCC1Q92922 1105 aaPredicted RBP27.37■■□□□ 1.97
CCS-208ENST00000533244 PRKRIP1Q9H875 184 aaPredicted RBP27.36■■□□□ 1.97
CCS-208ENST00000533244 FCHSD2O94868 740 aa27.35■■□□□ 1.97
CCS-208ENST00000533244 PRKAR2BP31323 418 aa27.35■■□□□ 1.97
CCS-208ENST00000533244 SLC15A2Q16348 729 aa27.35■■□□□ 1.97
CCS-208ENST00000533244 MRC1P22897 1456 aa27.35■■□□□ 1.97
CCS-208ENST00000533244 SRCAPQ6ZRS2 3230 aa27.34■■□□□ 1.97
CCS-208ENST00000533244 STK32BQ9NY57 414 aa27.34■■□□□ 1.97
CCS-208ENST00000533244 CCNL1Q9UK58 526 aaPredicted RBP27.34■■□□□ 1.97
CCS-208ENST00000533244 CASZ1Q86V15 1759 aa27.34■■□□□ 1.97
CCS-208ENST00000533244 VIRMAQ69YN4 1812 aaKnown RBP27.34■■□□□ 1.97
CCS-208ENST00000533244 LRP5O75197 1615 aa27.33■■□□□ 1.97
CCS-208ENST00000533244 GAS2L2Q8NHY3 880 aa27.33■■□□□ 1.96
CCS-208ENST00000533244 PHACTR3Q96KR7 559 aa27.33■■□□□ 1.96
CCS-208ENST00000533244 ASAP1Q9ULH1 1129 aa27.33■■□□□ 1.96
CCS-208ENST00000533244 KCNQ4P56696 695 aa27.32■■□□□ 1.96
CCS-208ENST00000533244 ZNF827Q17R98 1081 aa27.32■■□□□ 1.96
CCS-208ENST00000533244 AKT1S1Q96B36 256 aa27.32■■□□□ 1.96
CCS-208ENST00000533244 ATG3Q9NT62 314 aa27.32■■□□□ 1.96
CCS-208ENST00000533244 C5P01031 1676 aa27.31■■□□□ 1.96
CCS-208ENST00000533244 TAF1LQ8IZX4 1826 aa27.31■■□□□ 1.96
CCS-208ENST00000533244 CABP4P57796 275 aa27.31■■□□□ 1.96
CCS-208ENST00000533244 QSER1Q2KHR3 1735 aa27.3■■□□□ 1.96
CCS-208ENST00000533244 RNMTO43148 476 aaKnown RBP27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms