RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 RAPGEF4Q8WZA2 1011 aa24.71■■□□□ 1.55
PCF11-206ENST00000533018 MYOM1P52179 1685 aa24.71■■□□□ 1.55
PCF11-206ENST00000533018 PRIM1P49642 420 aaKnown RBP24.7■■□□□ 1.54
PCF11-206ENST00000533018 MEGF6O75095 1541 aa24.7■■□□□ 1.54
PCF11-206ENST00000533018 DOT1LQ8TEK3 1739 aa24.69■■□□□ 1.54
PCF11-206ENST00000533018 FLT4P35916 1363 aa24.68■■□□□ 1.54
PCF11-206ENST00000533018 PPM1GO15355 546 aaPredicted RBP24.68■■□□□ 1.54
PCF11-206ENST00000533018 TATP17735 454 aaPredicted RBP24.67■■□□□ 1.54
PCF11-206ENST00000533018 CCER1Q8TC90 406 aaPredicted RBP24.67■■□□□ 1.54
PCF11-206ENST00000533018 LRRC4BQ9NT99 713 aa24.67■■□□□ 1.54
PCF11-206ENST00000533018 INSRP06213 1382 aa24.67■■□□□ 1.54
PCF11-206ENST00000533018 SHANK3Q9BYB0 1731 aa24.66■■□□□ 1.54
PCF11-206ENST00000533018 MTFR1LQ9H019 292 aa24.66■■□□□ 1.54
PCF11-206ENST00000533018 CGNL1Q0VF96 1302 aa24.65■■□□□ 1.54
PCF11-206ENST00000533018 SLC27A3Q5K4L6 730 aa24.65■■□□□ 1.54
PCF11-206ENST00000533018 EMILIN1Q9Y6C2 1016 aa24.65■■□□□ 1.54
PCF11-206ENST00000533018 PTGER2P43116 358 aa24.64■■□□□ 1.54
PCF11-206ENST00000533018 ZNF827Q17R98 1081 aa24.64■■□□□ 1.54
PCF11-206ENST00000533018 PAPPAQ13219 1627 aa24.64■■□□□ 1.53
PCF11-206ENST00000533018 KCNQ4P56696 695 aa24.63■■□□□ 1.53
PCF11-206ENST00000533018 KIF24Q5T7B8 1368 aa24.63■■□□□ 1.53
PCF11-206ENST00000533018 MAP2P11137 1827 aaKnown RBP24.61■■□□□ 1.53
PCF11-206ENST00000533018 EIF4G2P78344 907 aaKnown RBP eCLIP24.61■■□□□ 1.53
PCF11-206ENST00000533018 YY1P25490 414 aa24.59■■□□□ 1.53
PCF11-206ENST00000533018 AKT1S1Q96B36 256 aa24.59■■□□□ 1.53
PCF11-206ENST00000533018 TFCP2L1Q9NZI6 479 aa24.59■■□□□ 1.53
PCF11-206ENST00000533018 PCDH11XQ9BZA7 1347 aa24.59■■□□□ 1.53
PCF11-206ENST00000533018 PCDH11YQ9BZA8 1340 aa24.59■■□□□ 1.53
PCF11-206ENST00000533018 HSPA5P11021 654 aaKnown RBP24.58■■□□□ 1.53
PCF11-206ENST00000533018 CCNL1Q9UK58 526 aaPredicted RBP24.58■■□□□ 1.53
PCF11-206ENST00000533018 NSD2O96028 1365 aa24.57■■□□□ 1.52
PCF11-206ENST00000533018 TNNT2P45379 298 aaPredicted RBP24.57■■□□□ 1.52
PCF11-206ENST00000533018 FHDC1Q9C0D6 1143 aaPredicted RBP24.57■■□□□ 1.52
PCF11-206ENST00000533018 UTRNP46939 3433 aa24.56■■□□□ 1.52
PCF11-206ENST00000533018 LY75O60449 1722 aa24.56■■□□□ 1.52
PCF11-206ENST00000533018 ARXQ96QS3 562 aa24.56■■□□□ 1.52
PCF11-206ENST00000533018 MPRIPQ6WCQ1 1025 aa24.54■■□□□ 1.52
PCF11-206ENST00000533018 SGIP1Q9BQI5 828 aa24.54■■□□□ 1.52
PCF11-206ENST00000533018 SYT17Q9BSW7 474 aa24.54■■□□□ 1.52
PCF11-206ENST00000533018 WASHC2AQ641Q2 1341 aa24.54■■□□□ 1.52
PCF11-206ENST00000533018 CYP27B1O15528 508 aa24.52■■□□□ 1.52
PCF11-206ENST00000533018 MSH5O43196 834 aa24.52■■□□□ 1.52
PCF11-206ENST00000533018 POLKQ9UBT6 870 aa24.52■■□□□ 1.52
PCF11-206ENST00000533018 PNPLA7Q6ZV29 1317 aa24.52■■□□□ 1.52
PCF11-206ENST00000533018 QSER1Q2KHR3 1735 aa24.52■■□□□ 1.52
PCF11-206ENST00000533018 KLHL34Q8N239 644 aa24.51■■□□□ 1.51
PCF11-206ENST00000533018 SLC16A10Q8TF71 515 aa24.51■■□□□ 1.51
PCF11-206ENST00000533018 PANK3Q9H999 370 aa24.51■■□□□ 1.51
PCF11-206ENST00000533018 SPG7Q9UQ90 795 aa24.51■■□□□ 1.51
PCF11-206ENST00000533018 ANKRD26Q9UPS8 1709 aa24.51■■□□□ 1.51
PCF11-206ENST00000533018 TUBGCP6Q96RT7 1819 aa24.51■■□□□ 1.51
PCF11-206ENST00000533018 POLD1P28340 1107 aa24.5■■□□□ 1.51
PCF11-206ENST00000533018 EYA1Q99502 592 aa24.5■■□□□ 1.51
PCF11-206ENST00000533018 ITGB4P16144 1822 aa24.47■■□□□ 1.51
PCF11-206ENST00000533018 PKD1L3Q7Z443 1732 aa24.47■■□□□ 1.51
PCF11-206ENST00000533018 PALLDQ8WX93 1383 aa24.45■■□□□ 1.5
PCF11-206ENST00000533018 TOGARAM1Q9Y4F4 1720 aa24.44■■□□□ 1.5
PCF11-206ENST00000533018 EIF4A2Q14240 407 aaKnown RBP24.44■■□□□ 1.5
PCF11-206ENST00000533018 NCAPD2Q15021 1401 aa24.44■■□□□ 1.5
PCF11-206ENST00000533018 C5P01031 1676 aa24.43■■□□□ 1.5
PCF11-206ENST00000533018 HMGB2P26583 209 aaKnown RBP24.43■■□□□ 1.5
PCF11-206ENST00000533018 SMARCC1Q92922 1105 aaPredicted RBP24.43■■□□□ 1.5
PCF11-206ENST00000533018 COL23A1Q86Y22 540 aaPredicted RBP24.42■■□□□ 1.5
PCF11-206ENST00000533018 PIGBQ92521 554 aa24.42■■□□□ 1.5
PCF11-206ENST00000533018 NKX1-1Q15270 411 aaPredicted RBP24.41■■□□□ 1.5
PCF11-206ENST00000533018 MORC1Q86VD1 984 aa24.41■■□□□ 1.5
PCF11-206ENST00000533018 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.41■■□□□ 1.51e-6■■■■□ 25.3
PCF11-206ENST00000533018 TAF1LQ8IZX4 1826 aa24.4■■□□□ 1.5
PCF11-206ENST00000533018 GOLGB1Q14789 3259 aaKnown RBP24.4■■□□□ 1.5
PCF11-206ENST00000533018 IFNL2Q8IZJ0 200 aa24.4■■□□□ 1.5
PCF11-206ENST00000533018 TMOD3Q9NYL9 352 aa24.4■■□□□ 1.5
PCF11-206ENST00000533018 GPR162Q16538 588 aa24.39■■□□□ 1.49
PCF11-206ENST00000533018 KNSTRNQ9Y448 316 aa24.39■■□□□ 1.49
PCF11-206ENST00000533018 MAP3K5Q99683 1374 aa24.39■■□□□ 1.49
PCF11-206ENST00000533018 PHKG2P15735 406 aa24.38■■□□□ 1.49
PCF11-206ENST00000533018 MSL1Q68DK7 614 aa24.38■■□□□ 1.49
PCF11-206ENST00000533018 PELP1Q8IZL8 1130 aaKnown RBP24.38■■□□□ 1.49
PCF11-206ENST00000533018 AK7Q96M32 723 aa24.37■■□□□ 1.49
PCF11-206ENST00000533018 COL24A1Q17RW2 1714 aa24.37■■□□□ 1.49
PCF11-206ENST00000533018 FLAD1Q8NFF5 587 aa24.36■■□□□ 1.49
PCF11-206ENST00000533018 CHD4Q14839 1912 aa24.35■■□□□ 1.49
PCF11-206ENST00000533018 PHF14O94880 888 aa24.34■■□□□ 1.49
PCF11-206ENST00000533018 C4BP0C0L5 1744 aa24.34■■□□□ 1.49
PCF11-206ENST00000533018 IGSF1Q8N6C5 1336 aa24.34■■□□□ 1.49
PCF11-206ENST00000533018 LOC102724428A0A0B4J2F2 783 aa24.33■■□□□ 1.49
PCF11-206ENST00000533018 SIK1P57059 783 aa24.33■■□□□ 1.49
PCF11-206ENST00000533018 ASAP1Q9ULH1 1129 aa24.33■■□□□ 1.49
PCF11-206ENST00000533018 PLEKHO1Q53GL0 409 aaPredicted RBP24.32■■□□□ 1.48
PCF11-206ENST00000533018 NLGN2Q8NFZ4 835 aa24.31■■□□□ 1.48
PCF11-206ENST00000533018 ATP6V1AP38606 617 aa24.3■■□□□ 1.48
PCF11-206ENST00000533018 HSP90AB1P08238 724 aaKnown RBP24.28■■□□□ 1.48
PCF11-206ENST00000533018 ZNF530Q6P9A1 599 aaPredicted RBP24.28■■□□□ 1.48
PCF11-206ENST00000533018 SMIM5Q71RC9 77 aa24.28■■□□□ 1.48
PCF11-206ENST00000533018 LINC00116Q8NCU8 138 aa24.28■■□□□ 1.48
PCF11-206ENST00000533018 ATG3Q9NT62 314 aa24.28■■□□□ 1.48
PCF11-206ENST00000533018 UBR3Q6ZT12 1888 aa24.28■■□□□ 1.48
PCF11-206ENST00000533018 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.27■■□□□ 1.48
PCF11-206ENST00000533018 AMOTQ4VCS5 1084 aa24.27■■□□□ 1.48
PCF11-206ENST00000533018 KIF7Q2M1P5 1343 aa24.27■■□□□ 1.48
PCF11-206ENST00000533018 SULT6B1Q6IMI4 303 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms