RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.45■□□□□ 0.7
CPSF1-206ENST00000531480 SBF2Q86WG5 1849 aa19.45■□□□□ 0.7
CPSF1-206ENST00000531480 MARCH10Q8NA82 808 aaPredicted RBP19.44■□□□□ 0.7
CPSF1-206ENST00000531480 TATP17735 454 aaPredicted RBP19.43■□□□□ 0.7
CPSF1-206ENST00000531480 PDE3BQ13370 1112 aa19.43■□□□□ 0.7
CPSF1-206ENST00000531480 AEBP1Q8IUX7 1158 aa19.43■□□□□ 0.7
CPSF1-206ENST00000531480 SULT6B1Q6IMI4 303 aa19.42■□□□□ 0.7
CPSF1-206ENST00000531480 ZCRB1Q8TBF4 217 aaKnown RBP19.42■□□□□ 0.7
CPSF1-206ENST00000531480 FAM196AQ6ZSG2 479 aa19.4■□□□□ 0.7
CPSF1-206ENST00000531480 NUDCQ9Y266 331 aa19.4■□□□□ 0.7
CPSF1-206ENST00000531480 ANP32CO43423 234 aa19.39■□□□□ 0.69
CPSF1-206ENST00000531480 TNS1Q9HBL0 1735 aaKnown RBP19.39■□□□□ 0.69
CPSF1-206ENST00000531480 PCDH11XQ9BZA7 1347 aa19.38■□□□□ 0.69
CPSF1-206ENST00000531480 PCDH11YQ9BZA8 1340 aa19.38■□□□□ 0.69
CPSF1-206ENST00000531480 NHSQ6T4R5 1651 aa19.37■□□□□ 0.69
CPSF1-206ENST00000531480 CYP27B1O15528 508 aa19.37■□□□□ 0.69
CPSF1-206ENST00000531480 AMOTQ4VCS5 1084 aa19.37■□□□□ 0.69
CPSF1-206ENST00000531480 FAM182BQ5T319 152 aa19.37■□□□□ 0.69
CPSF1-206ENST00000531480 RSPH6AQ9H0K4 717 aa19.37■□□□□ 0.69
CPSF1-206ENST00000531480 SPG7Q9UQ90 795 aa19.37■□□□□ 0.69
CPSF1-206ENST00000531480 U2SURPO15042 1029 aaKnown RBP19.36■□□□□ 0.69
CPSF1-206ENST00000531480 FCHSD2O94868 740 aa19.36■□□□□ 0.69
CPSF1-206ENST00000531480 HMOX1P09601 288 aa19.36■□□□□ 0.69
CPSF1-206ENST00000531480 NKX1-1Q15270 411 aaPredicted RBP19.36■□□□□ 0.69
CPSF1-206ENST00000531480 DEFB132Q7Z7B7 95 aa19.35■□□□□ 0.69
CPSF1-206ENST00000531480 CCDC125Q86Z20 511 aa19.35■□□□□ 0.69
CPSF1-206ENST00000531480 DOT1LQ8TEK3 1739 aa19.34■□□□□ 0.69
CPSF1-206ENST00000531480 TOGARAM1Q9Y4F4 1720 aa19.34■□□□□ 0.69
CPSF1-206ENST00000531480 ADAMTS7Q9UKP4 1686 aa19.34■□□□□ 0.69
CPSF1-206ENST00000531480 U2AF1L5P0DN76 240 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-206ENST00000531480 U2AF1Q01081 240 aaKnown RBP eCLIP19.34■□□□□ 0.69
CPSF1-206ENST00000531480 PLEKHO1Q53GL0 409 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-206ENST00000531480 DDX54Q8TDD1 881 aaKnown RBP19.33■□□□□ 0.68
CPSF1-206ENST00000531480 PHKG2P15735 406 aa19.32■□□□□ 0.68
CPSF1-206ENST00000531480 SF3B2Q13435 895 aaKnown RBP19.32■□□□□ 0.68
CPSF1-206ENST00000531480 RGPD3A6NKT7 1758 aaPredicted RBP19.32■□□□□ 0.68
CPSF1-206ENST00000531480 RGPD4Q7Z3J3 1758 aa19.32■□□□□ 0.68
CPSF1-206ENST00000531480 VIRMAQ69YN4 1812 aaKnown RBP19.31■□□□□ 0.68
CPSF1-206ENST00000531480 CCDC184Q52MB2 194 aa19.31■□□□□ 0.68
CPSF1-206ENST00000531480 IFNL2Q8IZJ0 200 aa19.31■□□□□ 0.68
CPSF1-206ENST00000531480 PLEKHF1Q96S99 279 aa19.31■□□□□ 0.68
CPSF1-206ENST00000531480 ITGB4P16144 1822 aa19.3■□□□□ 0.68
CPSF1-206ENST00000531480 SCN11AQ9UI33 1791 aa19.3■□□□□ 0.68
CPSF1-206ENST00000531480 PRKAR2BP31323 418 aa19.3■□□□□ 0.68
CPSF1-206ENST00000531480 MTHFSDQ2M296 383 aaKnown RBP19.29■□□□□ 0.68
CPSF1-206ENST00000531480 BCL11BQ9C0K0 894 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-206ENST00000531480 BTAF1O14981 1849 aa19.28■□□□□ 0.68
CPSF1-206ENST00000531480 ZNF530Q6P9A1 599 aaPredicted RBP19.28■□□□□ 0.68
CPSF1-206ENST00000531480 PHACTR3Q96KR7 559 aa19.28■□□□□ 0.68
CPSF1-206ENST00000531480 KDM6AO15550 1401 aaPredicted RBP19.27■□□□□ 0.68
CPSF1-206ENST00000531480 TRIM37O94972 964 aa19.27■□□□□ 0.68
CPSF1-206ENST00000531480 AKAP4Q5JQC9 854 aa19.27■□□□□ 0.68
CPSF1-206ENST00000531480 KAT6BQ8WYB5 2073 aa19.26■□□□□ 0.67
CPSF1-206ENST00000531480 DLG5Q8TDM6 1919 aa19.26■□□□□ 0.67
CPSF1-206ENST00000531480 HSP90AB1P08238 724 aaKnown RBP19.26■□□□□ 0.67
CPSF1-206ENST00000531480 DIEXFQ68CQ4 756 aaKnown RBP19.26■□□□□ 0.67
CPSF1-206ENST00000531480 DCAF5Q96JK2 942 aa19.26■□□□□ 0.67
CPSF1-206ENST00000531480 PNNQ9H307 717 aaKnown RBP19.26■□□□□ 0.67
CPSF1-206ENST00000531480 MRC1P22897 1456 aa19.25■□□□□ 0.67
CPSF1-206ENST00000531480 KCNQ2O43526 872 aa19.25■□□□□ 0.67
CPSF1-206ENST00000531480 PTF1AQ7RTS3 328 aa19.25■□□□□ 0.67
CPSF1-206ENST00000531480 GAS2L2Q8NHY3 880 aa19.25■□□□□ 0.67
CPSF1-206ENST00000531480 PNISRQ8TF01 805 aaKnown RBP19.25■□□□□ 0.67
CPSF1-206ENST00000531480 ADAMTS8Q9UP79 889 aa19.25■□□□□ 0.67
CPSF1-206ENST00000531480 WDR43Q15061 677 aaKnown RBP eCLIP19.23■□□□□ 0.67
CPSF1-206ENST00000531480 C1orf141Q5JVX7 400 aa19.23■□□□□ 0.67
CPSF1-206ENST00000531480 MAP3K5Q99683 1374 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 SIPA1L3O60292 1781 aaPredicted RBP19.22■□□□□ 0.67
CPSF1-206ENST00000531480 RREB1Q92766 1687 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 ERVV-2B6SEH9 535 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 PLSCR1O15162 318 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 BAG6P46379 1132 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 PRIM1P49642 420 aaKnown RBP19.22■□□□□ 0.67
CPSF1-206ENST00000531480 ACSBG1Q96GR2 724 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 MRS2Q9HD23 443 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 LY75O60449 1722 aa19.22■□□□□ 0.67
CPSF1-206ENST00000531480 CEMIPQ8WUJ3 1361 aa19.2■□□□□ 0.66
CPSF1-206ENST00000531480 CCER2I3L3R5 266 aa19.2■□□□□ 0.66
CPSF1-206ENST00000531480 GNAT3A8MTJ3 354 aa19.19■□□□□ 0.66
CPSF1-206ENST00000531480 HTATSF1O43719 755 aaKnown RBP19.19■□□□□ 0.66
CPSF1-206ENST00000531480 EN1Q05925 392 aaPredicted RBP19.19■□□□□ 0.66
CPSF1-206ENST00000531480 RUNDC1Q96C34 613 aa19.19■□□□□ 0.66
CPSF1-206ENST00000531480 CAMKK2Q96RR4 588 aa19.19■□□□□ 0.66
CPSF1-206ENST00000531480 RNMTO43148 476 aaKnown RBP19.18■□□□□ 0.66
CPSF1-206ENST00000531480 APBA3O96018 575 aa19.18■□□□□ 0.66
CPSF1-206ENST00000531480 MPRIPQ6WCQ1 1025 aa19.18■□□□□ 0.66
CPSF1-206ENST00000531480 LGR6Q9HBX8 967 aa19.18■□□□□ 0.66
CPSF1-206ENST00000531480 PAPPAQ13219 1627 aa19.18■□□□□ 0.66
CPSF1-206ENST00000531480 PSDA5PKW4 1024 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-206ENST00000531480 NEFMP07197 916 aa19.17■□□□□ 0.66
CPSF1-206ENST00000531480 NFE2L2Q16236 605 aa19.17■□□□□ 0.66
CPSF1-206ENST00000531480 IL17REQ8NFR9 667 aa19.17■□□□□ 0.66
CPSF1-206ENST00000531480 PIGBQ92521 554 aa19.17■□□□□ 0.66
CPSF1-206ENST00000531480 MAPK8IP3Q9UPT6 1336 aa19.17■□□□□ 0.66
CPSF1-206ENST00000531480 ZNF831Q5JPB2 1677 aa19.16■□□□□ 0.66
CPSF1-206ENST00000531480 NUP188Q5SRE5 1749 aa19.16■□□□□ 0.66
CPSF1-206ENST00000531480 SYTL4Q96C24 671 aaPredicted RBP19.15■□□□□ 0.66
CPSF1-206ENST00000531480 SLC52A2Q9HAB3 445 aa19.15■□□□□ 0.66
CPSF1-206ENST00000531480 TMPOP42166 694 aaKnown RBP19.14■□□□□ 0.65
CPSF1-206ENST00000531480 PROM2Q8N271 834 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms