RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 BCL9O00512 1426 aa7.25□□□□□ -1.25
HMGB1P40-201ENST00000525121 RGPD1P0DJD0 1748 aa7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 U2SURPO15042 1029 aaKnown RBP7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 APBA3O96018 575 aa7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 PPP2R1AP30153 589 aa7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 SULT6B1Q6IMI4 303 aa7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 BCL11BQ9C0K0 894 aaPredicted RBP7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 NCAPD2Q15021 1401 aa7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 MAP2P11137 1827 aaKnown RBP7.24□□□□□ -1.25
HMGB1P40-201ENST00000525121 PARD3Q8TEW0 1356 aa7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 NEFMP07197 916 aa7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 IL13P35225 146 aa7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 AMOTQ4VCS5 1084 aa7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 PLEKHO1Q53GL0 409 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 C1orf141Q5JVX7 400 aa7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 SYTL4Q96C24 671 aaPredicted RBP7.23□□□□□ -1.25
HMGB1P40-201ENST00000525121 HSP90AB1P08238 724 aaKnown RBP7.22□□□□□ -1.25
HMGB1P40-201ENST00000525121 IFNL2Q8IZJ0 200 aa7.22□□□□□ -1.25
HMGB1P40-201ENST00000525121 ACSBG1Q96GR2 724 aa7.22□□□□□ -1.25
HMGB1P40-201ENST00000525121 MYBBP1AQ9BQG0 1328 aaKnown RBP7.22□□□□□ -1.25
HMGB1P40-201ENST00000525121 KDRP35968 1356 aa7.21□□□□□ -1.25
HMGB1P40-201ENST00000525121 HMOX1P09601 288 aa7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 U2AF1L5P0DN76 240 aaPredicted RBP7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 U2AF1Q01081 240 aaKnown RBP eCLIP7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 EN1Q05925 392 aaPredicted RBP7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 ZNF530Q6P9A1 599 aaPredicted RBP7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 DEFB132Q7Z7B7 95 aa7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 AEBP1Q8IUX7 1158 aa7.21□□□□□ -1.26
HMGB1P40-201ENST00000525121 RGPD2P0DJD1 1756 aa7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 COL3A1P02461 1466 aaPredicted RBP7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 ANP32CO43423 234 aa7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 PHKG2P15735 406 aa7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 HMGB2P26583 209 aaKnown RBP7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 PRIM1P49642 420 aaKnown RBP7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 PNNQ9H307 717 aaKnown RBP7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 PKD1L3Q7Z443 1732 aa7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 TNS1Q9HBL0 1735 aaKnown RBP7.2□□□□□ -1.26
HMGB1P40-201ENST00000525121 NHSQ6T4R5 1651 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 PLSCR1O15162 318 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 CYP27B1O15528 508 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 KCNQ2O43526 872 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 WDR43Q15061 677 aaKnown RBP eCLIP7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 EZH2Q15910 746 aaKnown RBP7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 NBPF14Q5TI25 921 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 GAS2L2Q8NHY3 880 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 DCAF5Q96JK2 942 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 TMOD3Q9NYL9 352 aa7.19□□□□□ -1.26
HMGB1P40-201ENST00000525121 FCHSD2O94868 740 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 PRKAR2BP31323 418 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 NKX1-1Q15270 411 aaPredicted RBP7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 AKAP4Q5JQC9 854 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 MPRIPQ6WCQ1 1025 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 SMARCC1Q92922 1105 aaPredicted RBP7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 CAMKK2Q96RR4 588 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 PRKRIP1Q9H875 184 aaPredicted RBP7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 MAPK8IP3Q9UPT6 1336 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 DOT1LQ8TEK3 1739 aa7.18□□□□□ -1.26
HMGB1P40-201ENST00000525121 ERVV-2B6SEH9 535 aa7.17□□□□□ -1.26
HMGB1P40-201ENST00000525121 CABP4P57796 275 aa7.17□□□□□ -1.26
HMGB1P40-201ENST00000525121 SLC27A3Q5K4L6 730 aa7.17□□□□□ -1.26
HMGB1P40-201ENST00000525121 SHANK3Q9BYB0 1731 aa7.17□□□□□ -1.26
HMGB1P40-201ENST00000525121 RGPD3A6NKT7 1758 aaPredicted RBP7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 RGPD4Q7Z3J3 1758 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 TXNRD1Q16881 649 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 PTF1AQ7RTS3 328 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 RTF1Q92541 710 aaKnown RBP7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 RSPH6AQ9H0K4 717 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 STK32BQ9NY57 414 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 PALLDQ8WX93 1383 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 MAP3K5Q99683 1374 aa7.16□□□□□ -1.26
HMGB1P40-201ENST00000525121 GNAT3A8MTJ3 354 aa7.15□□□□□ -1.26
HMGB1P40-201ENST00000525121 TEFQ10587 303 aa7.15□□□□□ -1.26
HMGB1P40-201ENST00000525121 MTHFSDQ2M296 383 aaKnown RBP7.15□□□□□ -1.26
HMGB1P40-201ENST00000525121 CCNL1Q9UK58 526 aaPredicted RBP7.15□□□□□ -1.26
HMGB1P40-201ENST00000525121 BTAF1O14981 1849 aa7.15□□□□□ -1.27
HMGB1P40-201ENST00000525121 SBF2Q86WG5 1849 aa7.15□□□□□ -1.27
HMGB1P40-201ENST00000525121 KDM6AO15550 1401 aaPredicted RBP7.14□□□□□ -1.27
HMGB1P40-201ENST00000525121 R3HDM1Q15032 1099 aaKnown RBP7.14□□□□□ -1.27
HMGB1P40-201ENST00000525121 PIGBQ92521 554 aa7.14□□□□□ -1.27
HMGB1P40-201ENST00000525121 RREB1Q92766 1687 aa7.14□□□□□ -1.27
HMGB1P40-201ENST00000525121 PSDA5PKW4 1024 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 RNMTO43148 476 aaKnown RBP7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 LMOD3Q0VAK6 560 aa7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 TTC5Q8N0Z6 440 aa7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 RBM42Q9BTD8 480 aaKnown RBP7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 SLC52A2Q9HAB3 445 aa7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 EP400Q96L91 3159 aa7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 NUP188Q5SRE5 1749 aa7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 TOGARAM1Q9Y4F4 1720 aa7.13□□□□□ -1.27
HMGB1P40-201ENST00000525121 LOC102724428A0A0B4J2F2 783 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 HTATSF1O43719 755 aaKnown RBP7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 SIK1P57059 783 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 NFE2L2Q16236 605 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 NFATC2IPQ8NCF5 419 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 PHACTR3Q96KR7 559 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 AK7Q96M32 723 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 MRS2Q9HD23 443 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 TFCP2L1Q9NZI6 479 aa7.12□□□□□ -1.27
HMGB1P40-201ENST00000525121 ASAP1Q9ULH1 1129 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms