RNA–Protein interactions for RNA: ENST00000524165.5

PVT1-220, Transcript of Pvt1 oncogene, humanhuman

TSL 2

Gene PVT1, Length 458 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-220ENST00000524165 SYTL4Q96C24 671 aaPredicted RBP25.31■■□□□ 1.64
PVT1-220ENST00000524165 MON2Q7Z3U7 1717 aa25.31■■□□□ 1.64
PVT1-220ENST00000524165 NSD2O96028 1365 aa25.31■■□□□ 1.64
PVT1-220ENST00000524165 USP31Q70CQ4 1352 aa25.31■■□□□ 1.64
PVT1-220ENST00000524165 KTN1Q86UP2 1357 aaKnown RBP25.3■■□□□ 1.64
PVT1-220ENST00000524165 FAM208AQ9UK61 1670 aaKnown RBP25.29■■□□□ 1.64
PVT1-220ENST00000524165 C5P01031 1676 aa25.27■■□□□ 1.64
PVT1-220ENST00000524165 TOMM70O94826 608 aa25.27■■□□□ 1.64
PVT1-220ENST00000524165 WDR90Q96KV7 1748 aa25.26■■□□□ 1.63
PVT1-220ENST00000524165 FLAD1Q8NFF5 587 aa25.26■■□□□ 1.63
PVT1-220ENST00000524165 COL13A1Q5TAT6 717 aaPredicted RBP25.25■■□□□ 1.63
PVT1-220ENST00000524165 CICQ96RK0 1608 aaPredicted RBP25.24■■□□□ 1.63
PVT1-220ENST00000524165 IGSF1Q8N6C5 1336 aa25.24■■□□□ 1.63
PVT1-220ENST00000524165 HMGB2P26583 209 aaKnown RBP25.24■■□□□ 1.63
PVT1-220ENST00000524165 TAF1LQ8IZX4 1826 aa25.23■■□□□ 1.63
PVT1-220ENST00000524165 USP47Q96K76 1375 aa25.23■■□□□ 1.63
PVT1-220ENST00000524165 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.2■■□□□ 1.62
PVT1-220ENST00000524165 CAPN15O75808 1086 aa25.19■■□□□ 1.62
PVT1-220ENST00000524165 PRELPP51888 382 aa25.19■■□□□ 1.62
PVT1-220ENST00000524165 JMYQ8N9B5 988 aa25.19■■□□□ 1.62
PVT1-220ENST00000524165 NME9Q86XW9 330 aa25.17■■□□□ 1.62
PVT1-220ENST00000524165 KLRG1Q96E93 195 aa25.17■■□□□ 1.62
PVT1-220ENST00000524165 TNS4Q8IZW8 715 aa25.16■■□□□ 1.62
PVT1-220ENST00000524165 ZCRB1Q8TBF4 217 aaKnown RBP25.16■■□□□ 1.62
PVT1-220ENST00000524165 IP6K1Q92551 441 aa25.15■■□□□ 1.62
PVT1-220ENST00000524165 WWC3Q9ULE0 1092 aa25.15■■□□□ 1.62
PVT1-220ENST00000524165 SBNO2Q9Y2G9 1366 aa25.14■■□□□ 1.61
PVT1-220ENST00000524165 UBR3Q6ZT12 1888 aa25.13■■□□□ 1.61
PVT1-220ENST00000524165 C4BP0C0L5 1744 aa25.12■■□□□ 1.61
PVT1-220ENST00000524165 PCNTO95613 3336 aa25.12■■□□□ 1.61
PVT1-220ENST00000524165 RBM46Q8TBY0 533 aaKnown RBP25.12■■□□□ 1.61
PVT1-220ENST00000524165 TOGARAM1Q9Y4F4 1720 aa25.12■■□□□ 1.61
PVT1-220ENST00000524165 RGPD2P0DJD1 1756 aa25.11■■□□□ 1.61
PVT1-220ENST00000524165 CD163L1Q9NR16 1453 aa25.1■■□□□ 1.61
PVT1-220ENST00000524165 LTV1Q96GA3 475 aaPredicted RBP25.1■■□□□ 1.61
PVT1-220ENST00000524165 MEGF6O75095 1541 aa25.08■■□□□ 1.61
PVT1-220ENST00000524165 KIF13BQ9NQT8 1826 aa25.08■■□□□ 1.61
PVT1-220ENST00000524165 NMRK2Q9NPI5 230 aa25.08■■□□□ 1.61
PVT1-220ENST00000524165 NSD3Q9BZ95 1437 aa25.08■■□□□ 1.61
PVT1-220ENST00000524165 PALLDQ8WX93 1383 aa25.07■■□□□ 1.6
PVT1-220ENST00000524165 EDC4Q6P2E9 1401 aaKnown RBP25.06■■□□□ 1.6
PVT1-220ENST00000524165 FSTL1Q12841 308 aa25.06■■□□□ 1.6
PVT1-220ENST00000524165 AK7Q96M32 723 aa25.06■■□□□ 1.6
PVT1-220ENST00000524165 HTRA3P83110 453 aa25.05■■□□□ 1.6
PVT1-220ENST00000524165 KIAA1551Q9HCM1 1747 aa25.05■■□□□ 1.6
PVT1-220ENST00000524165 CGNL1Q0VF96 1302 aa25.05■■□□□ 1.6
PVT1-220ENST00000524165 AMIGO3Q86WK7 504 aa25.04■■□□□ 1.6
PVT1-220ENST00000524165 HDGFL2Q7Z4V5 671 aaPredicted RBP25.03■■□□□ 1.6
PVT1-220ENST00000524165 C16orf71Q8IYS4 520 aaPredicted RBP25.03■■□□□ 1.6
PVT1-220ENST00000524165 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.02■■□□□ 1.6
PVT1-220ENST00000524165 N4BP2Q86UW6 1770 aaPredicted RBP25.02■■□□□ 1.6
PVT1-220ENST00000524165 PXDNLA1KZ92 1463 aa25.02■■□□□ 1.6
PVT1-220ENST00000524165 SSFA2P28290 1259 aa25.01■■□□□ 1.59
PVT1-220ENST00000524165 ITGB4P16144 1822 aa25■■□□□ 1.59
PVT1-220ENST00000524165 PHF14O94880 888 aa25■■□□□ 1.59
PVT1-220ENST00000524165 HOXC9P31274 260 aa25■■□□□ 1.59
PVT1-220ENST00000524165 SMARCC1Q92922 1105 aaPredicted RBP24.99■■□□□ 1.59
PVT1-220ENST00000524165 PLEKHG2Q9H7P9 1386 aa24.98■■□□□ 1.59
PVT1-220ENST00000524165 TGFB2P61812 414 aa24.98■■□□□ 1.59
PVT1-220ENST00000524165 MAP3K19Q56UN5 1328 aa24.97■■□□□ 1.59
PVT1-220ENST00000524165 BCS1LQ9Y276 419 aa24.97■■□□□ 1.59
PVT1-220ENST00000524165 BRCA1P38398 1863 aaKnown RBP24.97■■□□□ 1.59
PVT1-220ENST00000524165 ROCK2O75116 1388 aaKnown RBP24.96■■□□□ 1.59
PVT1-220ENST00000524165 MPRIPQ6WCQ1 1025 aa24.96■■□□□ 1.59
PVT1-220ENST00000524165 ARHGAP27Q6ZUM4 889 aa24.96■■□□□ 1.59
PVT1-220ENST00000524165 TMC1Q8TDI8 760 aa24.96■■□□□ 1.59
PVT1-220ENST00000524165 MAP2P11137 1827 aaKnown RBP24.96■■□□□ 1.59
PVT1-220ENST00000524165 C10orf71Q711Q0 1435 aa24.95■■□□□ 1.59
PVT1-220ENST00000524165 PKD1L3Q7Z443 1732 aa24.95■■□□□ 1.59
PVT1-220ENST00000524165 AMPHP49418 695 aa24.95■■□□□ 1.58
PVT1-220ENST00000524165 SMIM5Q71RC9 77 aa24.95■■□□□ 1.58
PVT1-220ENST00000524165 RAPGEF4Q8WZA2 1011 aa24.95■■□□□ 1.58
PVT1-220ENST00000524165 PCDH11XQ9BZA7 1347 aa24.94■■□□□ 1.58
PVT1-220ENST00000524165 PCDH11YQ9BZA8 1340 aa24.94■■□□□ 1.58
PVT1-220ENST00000524165 ARFGEF1Q9Y6D6 1849 aa24.94■■□□□ 1.58
PVT1-220ENST00000524165 TERF2IPQ9NYB0 399 aa24.94■■□□□ 1.58
PVT1-220ENST00000524165 A0A1W2PP64 1363 aa24.93■■□□□ 1.58
PVT1-220ENST00000524165 NBPF6Q5VWK0 638 aa24.93■■□□□ 1.58
PVT1-220ENST00000524165 NBPF4Q96M43 638 aa24.93■■□□□ 1.58
PVT1-220ENST00000524165 SLC12A5Q9H2X9 1139 aa24.93■■□□□ 1.58
PVT1-220ENST00000524165 TNRC6CQ9HCJ0 1690 aaKnown RBP24.93■■□□□ 1.58
PVT1-220ENST00000524165 KDM2BQ8NHM5 1336 aa24.92■■□□□ 1.58
PVT1-220ENST00000524165 MMP10P09238 476 aa24.92■■□□□ 1.58
PVT1-220ENST00000524165 L3MBTL2Q969R5 705 aa24.92■■□□□ 1.58
PVT1-220ENST00000524165 A0A0G2JLW4 131 aa24.91■■□□□ 1.58
PVT1-220ENST00000524165 TATP17735 454 aaPredicted RBP24.91■■□□□ 1.58
PVT1-220ENST00000524165 RTL1A6NKG5 1358 aa24.91■■□□□ 1.58
PVT1-220ENST00000524165 SLC34A2O95436 690 aa24.9■■□□□ 1.58
PVT1-220ENST00000524165 C9orf131Q5VYM1 1079 aa24.9■■□□□ 1.58
PVT1-220ENST00000524165 COG3Q96JB2 828 aa24.89■■□□□ 1.58
PVT1-220ENST00000524165 KCPQ6ZWJ8 1503 aa24.89■■□□□ 1.57
PVT1-220ENST00000524165 FCHSD2O94868 740 aa24.88■■□□□ 1.57
PVT1-220ENST00000524165 HSPA1AP0DMV8 641 aaKnown RBP24.88■■□□□ 1.57
PVT1-220ENST00000524165 HSPA1BP0DMV9 641 aaKnown RBP24.88■■□□□ 1.57
PVT1-220ENST00000524165 LINC00116Q8NCU8 138 aa24.88■■□□□ 1.57
PVT1-220ENST00000524165 SMC1BQ8NDV3 1235 aa24.88■■□□□ 1.57
PVT1-220ENST00000524165 USHBP1Q8N6Y0 703 aa24.87■■□□□ 1.57
PVT1-220ENST00000524165 SMG6Q86US8 1419 aaKnown RBP24.86■■□□□ 1.57
PVT1-220ENST00000524165 LOC102724428A0A0B4J2F2 783 aa24.86■■□□□ 1.57
PVT1-220ENST00000524165 SIK1P57059 783 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms