RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ERCC3P19447 782 aa9.57□□□□□ -0.88
HDAC3-216ENST00000523088 UNC5CLQ8IV45 518 aa9.57□□□□□ -0.88
HDAC3-216ENST00000523088 NGDNQ8NEJ9 315 aaKnown RBP9.57□□□□□ -0.88
HDAC3-216ENST00000523088 UPF1Q92900 1129 aaKnown RBP eCLIP9.57□□□□□ -0.88
HDAC3-216ENST00000523088 KIF20AO95235 890 aa9.56□□□□□ -0.88
HDAC3-216ENST00000523088 MFAP1P55081 439 aaKnown RBP9.56□□□□□ -0.88
HDAC3-216ENST00000523088 MYBPC2Q14324 1141 aa9.56□□□□□ -0.88
HDAC3-216ENST00000523088 CCDC96Q2M329 555 aa9.56□□□□□ -0.88
HDAC3-216ENST00000523088 GJD4Q96KN9 370 aaPredicted RBP9.56□□□□□ -0.88
HDAC3-216ENST00000523088 HIRIP3Q9BW71 556 aaPredicted RBP9.56□□□□□ -0.88
HDAC3-216ENST00000523088 CCDC61Q9Y6R9 512 aa9.56□□□□□ -0.88
HDAC3-216ENST00000523088 NRAPQ86VF7 1730 aa9.56□□□□□ -0.88
HDAC3-216ENST00000523088 POLR3AO14802 1390 aaPredicted RBP9.55□□□□□ -0.88
HDAC3-216ENST00000523088 GOLGA6L3A6NEY3 463 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 HMGB1P1B2RPK0 211 aaPredicted RBP9.55□□□□□ -0.88
HDAC3-216ENST00000523088 LMOD2Q6P5Q4 547 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 PLCD3Q8N3E9 789 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 PMFBP1Q8TBY8 1022 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 SGSM3Q96HU1 749 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 TERF2IPQ9NYB0 399 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 PHRF1Q9P1Y6 1649 aaKnown RBP9.55□□□□□ -0.88
HDAC3-216ENST00000523088 PRR36Q9H6K5 1346 aa9.55□□□□□ -0.88
HDAC3-216ENST00000523088 GLI3P10071 1580 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 RALGAPBQ86X10 1494 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 ZNF316A6NFI3 1004 aaPredicted RBP9.54□□□□□ -0.88
HDAC3-216ENST00000523088 GOLIM4O00461 696 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 TNNT2P45379 298 aaPredicted RBP9.54□□□□□ -0.88
HDAC3-216ENST00000523088 VPS72Q15906 364 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 SDR16C5Q8N3Y7 309 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 NUDT16Q96DE0 195 aaKnown RBP9.54□□□□□ -0.88
HDAC3-216ENST00000523088 TRAIPQ9BWF2 469 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 MYH16Q9H6N6 1097 aa9.54□□□□□ -0.88
HDAC3-216ENST00000523088 FEZ2Q9UHY8 353 aaPredicted RBP9.54□□□□□ -0.88
HDAC3-216ENST00000523088 MYCNP04198 464 aaPredicted RBP9.53□□□□□ -0.88
HDAC3-216ENST00000523088 CDK19Q9BWU1 502 aa9.53□□□□□ -0.88
HDAC3-216ENST00000523088 RAI14Q9P0K7 980 aa9.53□□□□□ -0.88
HDAC3-216ENST00000523088 EP400Q96L91 3159 aa9.53□□□□□ -0.88
HDAC3-216ENST00000523088 ROCK2O75116 1388 aaKnown RBP9.52□□□□□ -0.88
HDAC3-216ENST00000523088 BRWD3Q6RI45 1802 aa9.52□□□□□ -0.89
HDAC3-216ENST00000523088 PLEKHG3A1L390 1219 aa9.52□□□□□ -0.89
HDAC3-216ENST00000523088 TPM2P07951 284 aa9.52□□□□□ -0.89
HDAC3-216ENST00000523088 SSR1P43307 286 aaKnown RBP9.52□□□□□ -0.89
HDAC3-216ENST00000523088 HDAC1Q13547 482 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-216ENST00000523088 NBPF10Q6P3W6 841 aaKnown RBP9.52□□□□□ -0.89
HDAC3-216ENST00000523088 FAM9BQ8IZU0 186 aa9.52□□□□□ -0.89
HDAC3-216ENST00000523088 TSPAN18Q96SJ8 248 aa9.52□□□□□ -0.89
HDAC3-216ENST00000523088 EVC2Q86UK5 1308 aa9.52□□□□□ -0.89
HDAC3-216ENST00000523088 SBNO2Q9Y2G9 1366 aa9.51□□□□□ -0.89
HDAC3-216ENST00000523088 PPIP5K1Q6PFW1 1433 aa9.51□□□□□ -0.89
HDAC3-216ENST00000523088 PAK3O75914 559 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-216ENST00000523088 SRPK2P78362 688 aaKnown RBP9.51□□□□□ -0.89
HDAC3-216ENST00000523088 ANKRD13AQ8IZ07 590 aa9.51□□□□□ -0.89
HDAC3-216ENST00000523088 L3MBTL2Q969R5 705 aa9.51□□□□□ -0.89
HDAC3-216ENST00000523088 NUB1Q9Y5A7 615 aa9.51□□□□□ -0.89
HDAC3-216ENST00000523088 NRKQ7Z2Y5 1582 aa9.5□□□□□ -0.89
HDAC3-216ENST00000523088 ANP32CO43423 234 aa9.5□□□□□ -0.89
HDAC3-216ENST00000523088 RBM28Q9NW13 759 aaKnown RBP9.5□□□□□ -0.89
HDAC3-216ENST00000523088 ACEP12821 1306 aa9.5□□□□□ -0.89
HDAC3-216ENST00000523088 AKAP12Q02952 1782 aa9.5□□□□□ -0.89
HDAC3-216ENST00000523088 TONSLQ96HA7 1378 aa9.5□□□□□ -0.89
HDAC3-216ENST00000523088 BLMP54132 1417 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-216ENST00000523088 SOX12O15370 315 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 ONECUT3O60422 494 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-216ENST00000523088 ZKSCAN8Q15776 578 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-216ENST00000523088 NBPF8Q3BBV2 869 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 NBPF6Q5VWK0 638 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 NOL8Q76FK4 1167 aaKnown RBP9.49□□□□□ -0.89
HDAC3-216ENST00000523088 MTERF4Q7Z6M4 381 aaKnown RBP9.49□□□□□ -0.89
HDAC3-216ENST00000523088 NBPF5PQ86XG9 351 aaPredicted RBP9.49□□□□□ -0.89
HDAC3-216ENST00000523088 CABLES1Q8TDN4 633 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 NBPF4Q96M43 638 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 PRDM11Q9NQV5 511 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 CPDO75976 1380 aa9.49□□□□□ -0.89
HDAC3-216ENST00000523088 RGPD1P0DJD0 1748 aa9.48□□□□□ -0.89
HDAC3-216ENST00000523088 SF3B2Q13435 895 aaKnown RBP9.48□□□□□ -0.89
HDAC3-216ENST00000523088 PPP4R3BQ5MIZ7 849 aa9.48□□□□□ -0.89
HDAC3-216ENST00000523088 NLRP13Q86W25 1043 aa9.48□□□□□ -0.89
HDAC3-216ENST00000523088 BTG4Q9NY30 223 aa9.48□□□□□ -0.89
HDAC3-216ENST00000523088 THSD7AQ9UPZ6 1657 aa9.48□□□□□ -0.89
HDAC3-216ENST00000523088 USP6P35125 1406 aa9.48□□□□□ -0.89
HDAC3-216ENST00000523088 FAM83GA6ND36 823 aa9.47□□□□□ -0.89
HDAC3-216ENST00000523088 ARID4AP29374 1257 aaPredicted RBP9.47□□□□□ -0.89
HDAC3-216ENST00000523088 GORABQ5T7V8 394 aa9.47□□□□□ -0.89
HDAC3-216ENST00000523088 NME8Q8N427 588 aa9.47□□□□□ -0.89
HDAC3-216ENST00000523088 ABTB2Q8N961 1025 aa9.47□□□□□ -0.89
HDAC3-216ENST00000523088 USP19O94966 1318 aa9.47□□□□□ -0.89
HDAC3-216ENST00000523088 LMO7Q8WWI1 1683 aa9.46□□□□□ -0.89
HDAC3-216ENST00000523088 MON2Q7Z3U7 1717 aa9.46□□□□□ -0.89
HDAC3-216ENST00000523088 MAP2K1Q02750 393 aaPredicted RBP9.46□□□□□ -0.9
HDAC3-216ENST00000523088 SEMA3FQ13275 785 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 KRT27Q7Z3Y8 459 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 SEPT12Q8IYM1 358 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 SPATA31A5Q5VU36 1347 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 SPATA31A7Q8IWB4 1347 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 KIAA0232Q92628 1395 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 SLIT3O75094 1523 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 ABCC6O95255 1503 aa9.46□□□□□ -0.9
HDAC3-216ENST00000523088 A0A0G2JS52 829 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 DMTNQ08495 405 aa9.45□□□□□ -0.9
HDAC3-216ENST00000523088 SIN3AQ96ST3 1273 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms