RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 RAPGEF4Q8WZA2 1011 aa12.83□□□□□ -0.36
HDAC3-215ENST00000519474 KNSTRNQ9Y448 316 aa12.83□□□□□ -0.36
HDAC3-215ENST00000519474 AMER1Q5JTC6 1135 aaPredicted RBP12.82□□□□□ -0.36
HDAC3-215ENST00000519474 MORC1Q86VD1 984 aa12.82□□□□□ -0.36
HDAC3-215ENST00000519474 ANO8Q9HCE9 1232 aaPredicted RBP12.82□□□□□ -0.36
HDAC3-215ENST00000519474 MAP2P11137 1827 aaKnown RBP12.81□□□□□ -0.36
HDAC3-215ENST00000519474 KIF20BQ96Q89 1820 aa12.81□□□□□ -0.36
HDAC3-215ENST00000519474 EIF4A2Q14240 407 aaKnown RBP12.81□□□□□ -0.36
HDAC3-215ENST00000519474 KAT6BQ8WYB5 2073 aa12.81□□□□□ -0.36
HDAC3-215ENST00000519474 FAM208AQ9UK61 1670 aaKnown RBP12.8□□□□□ -0.36
HDAC3-215ENST00000519474 MEGF6O75095 1541 aa12.8□□□□□ -0.36
HDAC3-215ENST00000519474 CYP27B1O15528 508 aa12.8□□□□□ -0.36
HDAC3-215ENST00000519474 LRRC4BQ9NT99 713 aa12.8□□□□□ -0.36
HDAC3-215ENST00000519474 PDGFDQ9GZP0 370 aaPredicted RBP12.79□□□□□ -0.36
HDAC3-215ENST00000519474 SMG6Q86US8 1419 aaKnown RBP12.79□□□□□ -0.36
HDAC3-215ENST00000519474 RREB1Q92766 1687 aa12.78□□□□□ -0.36
HDAC3-215ENST00000519474 SLC15A2Q16348 729 aa12.78□□□□□ -0.36
HDAC3-215ENST00000519474 SYTL4Q96C24 671 aaPredicted RBP12.78□□□□□ -0.36
HDAC3-215ENST00000519474 KCNQ4P56696 695 aa12.77□□□□□ -0.37
HDAC3-215ENST00000519474 NKX1-1Q15270 411 aaPredicted RBP12.77□□□□□ -0.37
HDAC3-215ENST00000519474 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.77□□□□□ -0.37
HDAC3-215ENST00000519474 NSD2O96028 1365 aa12.77□□□□□ -0.37
HDAC3-215ENST00000519474 NUP188Q5SRE5 1749 aa12.76□□□□□ -0.37
HDAC3-215ENST00000519474 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
HDAC3-215ENST00000519474 SPG7Q9UQ90 795 aa12.76□□□□□ -0.37
HDAC3-215ENST00000519474 NCAPD2Q15021 1401 aa12.76□□□□□ -0.37
HDAC3-215ENST00000519474 MTHFSP49914 203 aa12.75□□□□□ -0.37
HDAC3-215ENST00000519474 SPON1Q9HCB6 807 aa12.75□□□□□ -0.37
HDAC3-215ENST00000519474 IGSF1Q8N6C5 1336 aa12.74□□□□□ -0.37
HDAC3-215ENST00000519474 PCDH11XQ9BZA7 1347 aa12.74□□□□□ -0.37
HDAC3-215ENST00000519474 PCDH11YQ9BZA8 1340 aa12.74□□□□□ -0.37
HDAC3-215ENST00000519474 IL13P35225 146 aa12.74□□□□□ -0.37
HDAC3-215ENST00000519474 SLC27A3Q5K4L6 730 aa12.74□□□□□ -0.37
HDAC3-215ENST00000519474 CC2D1BQ5T0F9 858 aaKnown RBP12.74□□□□□ -0.37
HDAC3-215ENST00000519474 NHSQ6T4R5 1651 aa12.73□□□□□ -0.37
HDAC3-215ENST00000519474 MPRIPQ6WCQ1 1025 aa12.73□□□□□ -0.37
HDAC3-215ENST00000519474 AKT1S1Q96B36 256 aa12.73□□□□□ -0.37
HDAC3-215ENST00000519474 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-215ENST00000519474 BTAF1O14981 1849 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 RGPD3A6NKT7 1758 aaPredicted RBP12.72□□□□□ -0.37
HDAC3-215ENST00000519474 RGPD4Q7Z3J3 1758 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 SHANK3Q9BYB0 1731 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 PHKG2P15735 406 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 ZNF827Q17R98 1081 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 IFNL2Q8IZJ0 200 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 PIGBQ92521 554 aa12.72□□□□□ -0.37
HDAC3-215ENST00000519474 ANKRD26Q9UPS8 1709 aa12.71□□□□□ -0.37
HDAC3-215ENST00000519474 ZBTB7AO95365 584 aa12.71□□□□□ -0.37
HDAC3-215ENST00000519474 AEBP1Q8IUX7 1158 aa12.71□□□□□ -0.37
HDAC3-215ENST00000519474 PTGER2P43116 358 aa12.7□□□□□ -0.38
HDAC3-215ENST00000519474 CNGB1Q14028 1251 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-215ENST00000519474 PLEKHO1Q53GL0 409 aaPredicted RBP12.7□□□□□ -0.38
HDAC3-215ENST00000519474 SULT6B1Q6IMI4 303 aa12.7□□□□□ -0.38
HDAC3-215ENST00000519474 LRP5O75197 1615 aa12.7□□□□□ -0.38
HDAC3-215ENST00000519474 CCNL1Q9UK58 526 aaPredicted RBP12.69□□□□□ -0.38
HDAC3-215ENST00000519474 NPC1L1Q9UHC9 1359 aa12.69□□□□□ -0.38
HDAC3-215ENST00000519474 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
HDAC3-215ENST00000519474 SMARCC1Q92922 1105 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-215ENST00000519474 SGIP1Q9BQI5 828 aa12.68□□□□□ -0.38
HDAC3-215ENST00000519474 ASAP1Q9ULH1 1129 aa12.68□□□□□ -0.38
HDAC3-215ENST00000519474 MTFR1LQ9H019 292 aa12.67□□□□□ -0.38
HDAC3-215ENST00000519474 TFCP2L1Q9NZI6 479 aa12.67□□□□□ -0.38
HDAC3-215ENST00000519474 PNPLA7Q6ZV29 1317 aa12.66□□□□□ -0.38
HDAC3-215ENST00000519474 ERVV-2B6SEH9 535 aa12.66□□□□□ -0.38
HDAC3-215ENST00000519474 DIAPH1O60610 1272 aaKnown RBP12.66□□□□□ -0.38
HDAC3-215ENST00000519474 SLC16A10Q8TF71 515 aa12.66□□□□□ -0.38
HDAC3-215ENST00000519474 DCAF5Q96JK2 942 aa12.66□□□□□ -0.38
HDAC3-215ENST00000519474 ATG3Q9NT62 314 aa12.66□□□□□ -0.38
HDAC3-215ENST00000519474 PPP1R1BQ9UD71 204 aaPredicted RBP12.66□□□□□ -0.38
HDAC3-215ENST00000519474 DOT1LQ8TEK3 1739 aa12.65□□□□□ -0.38
HDAC3-215ENST00000519474 HSP90AB1P08238 724 aaKnown RBP12.65□□□□□ -0.38
HDAC3-215ENST00000519474 HMOX1P09601 288 aa12.65□□□□□ -0.38
HDAC3-215ENST00000519474 ZNF530Q6P9A1 599 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-215ENST00000519474 COL23A1Q86Y22 540 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-215ENST00000519474 TMOD3Q9NYL9 352 aa12.65□□□□□ -0.38
HDAC3-215ENST00000519474 PALLDQ8WX93 1383 aa12.65□□□□□ -0.38
HDAC3-215ENST00000519474 PKD1L3Q7Z443 1732 aa12.65□□□□□ -0.38
HDAC3-215ENST00000519474 CASZ1Q86V15 1759 aa12.64□□□□□ -0.39
HDAC3-215ENST00000519474 KDRP35968 1356 aa12.64□□□□□ -0.39
HDAC3-215ENST00000519474 PLEKHG2Q9H7P9 1386 aa12.64□□□□□ -0.39
HDAC3-215ENST00000519474 SRCAPQ6ZRS2 3230 aa12.64□□□□□ -0.39
HDAC3-215ENST00000519474 PAPPAQ13219 1627 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 LY75O60449 1722 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 LOC102724428A0A0B4J2F2 783 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 HMGB2P26583 209 aaKnown RBP12.63□□□□□ -0.39
HDAC3-215ENST00000519474 SIK1P57059 783 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 CABP4P57796 275 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 SMIM5Q71RC9 77 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 NFATC2IPQ8NCF5 419 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 LGR6Q9HBX8 967 aa12.63□□□□□ -0.39
HDAC3-215ENST00000519474 ITGB4P16144 1822 aa12.62□□□□□ -0.39
HDAC3-215ENST00000519474 ITPK1Q13572 414 aa12.62□□□□□ -0.39
HDAC3-215ENST00000519474 C1orf141Q5JVX7 400 aa12.62□□□□□ -0.39
HDAC3-215ENST00000519474 SLC4A9Q96Q91 983 aa12.62□□□□□ -0.39
HDAC3-215ENST00000519474 SYT17Q9BSW7 474 aa12.62□□□□□ -0.39
HDAC3-215ENST00000519474 PPP2R1AP30153 589 aa12.61□□□□□ -0.39
HDAC3-215ENST00000519474 ATP6V1AP38606 617 aa12.61□□□□□ -0.39
HDAC3-215ENST00000519474 MTHFSDQ2M296 383 aaKnown RBP12.61□□□□□ -0.39
HDAC3-215ENST00000519474 AKAP4Q5JQC9 854 aa12.61□□□□□ -0.39
HDAC3-215ENST00000519474 AMIGO3Q86WK7 504 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms