RNA–Protein interactions for RNA: ENST00000518538.5

VEGFA-217, Transcript of vascular endothelial growth factor A, humanhuman

TSL 2

Gene VEGFA, Length 535 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-217ENST00000518538 SHANK3Q9BYB0 1731 aa29.68■■■□□ 2.34
VEGFA-217ENST00000518538 DDX54Q8TDD1 881 aaKnown RBP29.68■■■□□ 2.34
VEGFA-217ENST00000518538 COL3A1P02461 1466 aaPredicted RBP29.68■■■□□ 2.34
VEGFA-217ENST00000518538 PLEKHG2Q9H7P9 1386 aa29.66■■■□□ 2.34
VEGFA-217ENST00000518538 DIAPH1O60610 1272 aaKnown RBP29.66■■■□□ 2.34
VEGFA-217ENST00000518538 SBF2Q86WG5 1849 aa29.66■■■□□ 2.34
VEGFA-217ENST00000518538 PKD1L3Q7Z443 1732 aa29.65■■■□□ 2.34
VEGFA-217ENST00000518538 BAG6P46379 1132 aa29.65■■■□□ 2.34
VEGFA-217ENST00000518538 DEFB132Q7Z7B7 95 aa29.64■■■□□ 2.34
VEGFA-217ENST00000518538 PCDH11XQ9BZA7 1347 aa29.64■■■□□ 2.34
VEGFA-217ENST00000518538 PCDH11YQ9BZA8 1340 aa29.64■■■□□ 2.34
VEGFA-217ENST00000518538 CFAP53Q96M91 514 aa29.63■■■□□ 2.33
VEGFA-217ENST00000518538 BCL11BQ9C0K0 894 aaPredicted RBP29.62■■■□□ 2.33
VEGFA-217ENST00000518538 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.62■■■□□ 2.332e-31■□□□□ 9.6
VEGFA-217ENST00000518538 KDRP35968 1356 aa29.62■■■□□ 2.33
VEGFA-217ENST00000518538 RALBP1Q15311 655 aa29.61■■■□□ 2.33
VEGFA-217ENST00000518538 SULT6B1Q6IMI4 303 aa29.61■■■□□ 2.33
VEGFA-217ENST00000518538 AEBP1Q8IUX7 1158 aa29.61■■■□□ 2.33
VEGFA-217ENST00000518538 SPG7Q9UQ90 795 aa29.61■■■□□ 2.33
VEGFA-217ENST00000518538 APBA3O96018 575 aa29.6■■■□□ 2.33
VEGFA-217ENST00000518538 NHSQ6T4R5 1651 aa29.59■■■□□ 2.33
VEGFA-217ENST00000518538 CYP27B1O15528 508 aa29.57■■■□□ 2.32
VEGFA-217ENST00000518538 EN1Q05925 392 aaPredicted RBP29.57■■■□□ 2.32
VEGFA-217ENST00000518538 ACSBG1Q96GR2 724 aa29.57■■■□□ 2.32
VEGFA-217ENST00000518538 PTF1AQ7RTS3 328 aa29.56■■■□□ 2.32
VEGFA-217ENST00000518538 KCNQ2O43526 872 aa29.55■■■□□ 2.32
VEGFA-217ENST00000518538 U2SURPO15042 1029 aaKnown RBP29.53■■■□□ 2.32
VEGFA-217ENST00000518538 PLEKHO1Q53GL0 409 aaPredicted RBP29.53■■■□□ 2.32
VEGFA-217ENST00000518538 DOT1LQ8TEK3 1739 aa29.52■■■□□ 2.32
VEGFA-217ENST00000518538 HMOX1P09601 288 aa29.52■■■□□ 2.32
VEGFA-217ENST00000518538 AMOTQ4VCS5 1084 aa29.52■■■□□ 2.32
VEGFA-217ENST00000518538 CAMKK2Q96RR4 588 aa29.52■■■□□ 2.32
VEGFA-217ENST00000518538 NUDCQ9Y266 331 aa29.52■■■□□ 2.32
VEGFA-217ENST00000518538 PLSCR1O15162 318 aa29.5■■■□□ 2.31
VEGFA-217ENST00000518538 NKX1-1Q15270 411 aaPredicted RBP29.5■■■□□ 2.31
VEGFA-217ENST00000518538 EZH2Q15910 746 aaKnown RBP29.5■■■□□ 2.31
VEGFA-217ENST00000518538 IFNL2Q8IZJ0 200 aa29.5■■■□□ 2.31
VEGFA-217ENST00000518538 RGPD3A6NKT7 1758 aaPredicted RBP29.49■■■□□ 2.31
VEGFA-217ENST00000518538 RGPD4Q7Z3J3 1758 aa29.49■■■□□ 2.31
VEGFA-217ENST00000518538 PHKG2P15735 406 aa29.49■■■□□ 2.31
VEGFA-217ENST00000518538 MYBBP1AQ9BQG0 1328 aaKnown RBP29.48■■■□□ 2.31
VEGFA-217ENST00000518538 PRIM1P49642 420 aaKnown RBP29.48■■■□□ 2.31
VEGFA-217ENST00000518538 SYTL4Q96C24 671 aaPredicted RBP29.47■■■□□ 2.31
VEGFA-217ENST00000518538 ZNF530Q6P9A1 599 aaPredicted RBP29.46■■■□□ 2.31
VEGFA-217ENST00000518538 PRKRIP1Q9H875 184 aaPredicted RBP29.46■■■□□ 2.31
VEGFA-217ENST00000518538 BTAF1O14981 1849 aa29.45■■■□□ 2.31
VEGFA-217ENST00000518538 RREB1Q92766 1687 aa29.44■■■□□ 2.3
VEGFA-217ENST00000518538 TOGARAM1Q9Y4F4 1720 aa29.44■■■□□ 2.3
VEGFA-217ENST00000518538 HSP90AB1P08238 724 aaKnown RBP29.42■■■□□ 2.3
VEGFA-217ENST00000518538 U2AF1L5P0DN76 240 aaPredicted RBP29.42■■■□□ 2.3
VEGFA-217ENST00000518538 U2AF1Q01081 240 aaKnown RBP eCLIP29.42■■■□□ 2.3
VEGFA-217ENST00000518538 KAT6BQ8WYB5 2073 aa29.41■■■□□ 2.3
VEGFA-217ENST00000518538 C1orf141Q5JVX7 400 aa29.41■■■□□ 2.3
VEGFA-217ENST00000518538 RSPH6AQ9H0K4 717 aa29.4■■■□□ 2.3
VEGFA-217ENST00000518538 DCAF5Q96JK2 942 aa29.39■■■□□ 2.3
VEGFA-217ENST00000518538 NUP188Q5SRE5 1749 aa29.37■■■□□ 2.29
VEGFA-217ENST00000518538 FCHSD2O94868 740 aa29.37■■■□□ 2.29
VEGFA-217ENST00000518538 PRKAR2BP31323 418 aa29.37■■■□□ 2.29
VEGFA-217ENST00000518538 TXNRD1Q16881 649 aa29.36■■■□□ 2.29
VEGFA-217ENST00000518538 MTHFSDQ2M296 383 aaKnown RBP29.36■■■□□ 2.29
VEGFA-217ENST00000518538 AKAP4Q5JQC9 854 aa29.36■■■□□ 2.29
VEGFA-217ENST00000518538 MPRIPQ6WCQ1 1025 aa29.36■■■□□ 2.29
VEGFA-217ENST00000518538 PROM2Q8N271 834 aa29.36■■■□□ 2.29
VEGFA-217ENST00000518538 KDM6AO15550 1401 aaPredicted RBP29.36■■■□□ 2.29
VEGFA-217ENST00000518538 ITGB4P16144 1822 aa29.35■■■□□ 2.29
VEGFA-217ENST00000518538 ERVV-2B6SEH9 535 aa29.33■■■□□ 2.29
VEGFA-217ENST00000518538 TMOD3Q9NYL9 352 aa29.33■■■□□ 2.29
VEGFA-217ENST00000518538 GAS2L2Q8NHY3 880 aa29.32■■■□□ 2.28
VEGFA-217ENST00000518538 PIGBQ92521 554 aa29.32■■■□□ 2.28
VEGFA-217ENST00000518538 PHACTR3Q96KR7 559 aa29.3■■■□□ 2.28
VEGFA-217ENST00000518538 LY75O60449 1722 aa29.28■■■□□ 2.28
VEGFA-217ENST00000518538 SLC27A3Q5K4L6 730 aa29.28■■■□□ 2.28
VEGFA-217ENST00000518538 NBPF14Q5TI25 921 aa29.28■■■□□ 2.28
VEGFA-217ENST00000518538 SCN11AQ9UI33 1791 aa29.27■■■□□ 2.28
VEGFA-217ENST00000518538 ANP32CO43423 234 aa29.27■■■□□ 2.28
VEGFA-217ENST00000518538 SMARCC1Q92922 1105 aaPredicted RBP29.27■■■□□ 2.28
VEGFA-217ENST00000518538 PALLDQ8WX93 1383 aa29.26■■■□□ 2.28
VEGFA-217ENST00000518538 MAP3K5Q99683 1374 aa29.26■■■□□ 2.28
VEGFA-217ENST00000518538 CABP4P57796 275 aa29.26■■■□□ 2.27
VEGFA-217ENST00000518538 ADAMTS7Q9UKP4 1686 aa29.25■■■□□ 2.27
VEGFA-217ENST00000518538 RNMTO43148 476 aaKnown RBP29.25■■■□□ 2.27
VEGFA-217ENST00000518538 PNNQ9H307 717 aaKnown RBP29.24■■■□□ 2.27
VEGFA-217ENST00000518538 LGR6Q9HBX8 967 aa29.24■■■□□ 2.27
VEGFA-217ENST00000518538 LRRC4BQ9NT99 713 aa29.24■■■□□ 2.27
VEGFA-217ENST00000518538 GNAT3A8MTJ3 354 aa29.23■■■□□ 2.27
VEGFA-217ENST00000518538 NEFMP07197 916 aa29.23■■■□□ 2.27
VEGFA-217ENST00000518538 PLEKHF1Q96S99 279 aa29.23■■■□□ 2.27
VEGFA-217ENST00000518538 PAPPAQ13219 1627 aa29.23■■■□□ 2.27
VEGFA-217ENST00000518538 MRC1P22897 1456 aa29.23■■■□□ 2.27
VEGFA-217ENST00000518538 R3HDM1Q15032 1099 aaKnown RBP29.22■■■□□ 2.27
VEGFA-217ENST00000518538 ANO8Q9HCE9 1232 aaPredicted RBP29.22■■■□□ 2.27
VEGFA-217ENST00000518538 CCNL1Q9UK58 526 aaPredicted RBP29.21■■■□□ 2.27
VEGFA-217ENST00000518538 ASAP1Q9ULH1 1129 aa29.21■■■□□ 2.27
VEGFA-217ENST00000518538 PSDA5PKW4 1024 aaPredicted RBP29.2■■■□□ 2.26
VEGFA-217ENST00000518538 WDR43Q15061 677 aaKnown RBP eCLIP29.2■■■□□ 2.262e-17■□□□□ 9.4
VEGFA-217ENST00000518538 NFATC2IPQ8NCF5 419 aa29.2■■■□□ 2.26
VEGFA-217ENST00000518538 SLC52A2Q9HAB3 445 aa29.2■■■□□ 2.26
VEGFA-217ENST00000518538 ATG3Q9NT62 314 aa29.2■■■□□ 2.26
VEGFA-217ENST00000518538 VIRMAQ69YN4 1812 aaKnown RBP29.18■■■□□ 2.26
VEGFA-217ENST00000518538 KCNQ4P56696 695 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms