RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 TATP17735 454 aaPredicted RBP27.85■■■□□ 2.05
LSM6-207ENST00000515311 PLEKHF1Q96S99 279 aa27.85■■■□□ 2.05
LSM6-207ENST00000515311 RBM6P78332 1123 aaKnown RBP27.84■■■□□ 2.05
LSM6-207ENST00000515311 LRRC37A3O60309 1634 aa27.84■■■□□ 2.05
LSM6-207ENST00000515311 FAM98CQ17RN3 349 aaKnown RBP27.83■■■□□ 2.05
LSM6-207ENST00000515311 RUNDC1Q96C34 613 aa27.83■■■□□ 2.05
LSM6-207ENST00000515311 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.83■■■□□ 2.054e-7■■■□□ 17.4
LSM6-207ENST00000515311 SHANK3Q9BYB0 1731 aa27.82■■■□□ 2.04
LSM6-207ENST00000515311 ONECUT3O60422 494 aaPredicted RBP27.82■■■□□ 2.04
LSM6-207ENST00000515311 NEFMP07197 916 aa27.82■■■□□ 2.04
LSM6-207ENST00000515311 MAPK8IP3Q9UPT6 1336 aa27.81■■■□□ 2.04
LSM6-207ENST00000515311 AMOTQ4VCS5 1084 aa27.8■■■□□ 2.04
LSM6-207ENST00000515311 TNS2Q63HR2 1409 aa27.8■■■□□ 2.04
LSM6-207ENST00000515311 PLEKHO1Q53GL0 409 aaPredicted RBP27.79■■■□□ 2.04
LSM6-207ENST00000515311 POTEAQ6S8J7 498 aa27.79■■■□□ 2.04
LSM6-207ENST00000515311 CCDC146Q8IYE0 955 aa27.79■■■□□ 2.04
LSM6-207ENST00000515311 PHACTR3Q96KR7 559 aa27.79■■■□□ 2.04
LSM6-207ENST00000515311 RXRBP28702 533 aa27.78■■■□□ 2.04
LSM6-207ENST00000515311 SPG7Q9UQ90 795 aa27.78■■■□□ 2.04
LSM6-207ENST00000515311 ZCRB1Q8TBF4 217 aaKnown RBP27.76■■■□□ 2.03
LSM6-207ENST00000515311 GAS2L2Q8NHY3 880 aa27.75■■■□□ 2.03
LSM6-207ENST00000515311 DLG5Q8TDM6 1919 aa27.75■■■□□ 2.03
LSM6-207ENST00000515311 DDB1Q16531 1140 aa27.74■■■□□ 2.03
LSM6-207ENST00000515311 PCDH11XQ9BZA7 1347 aa27.73■■■□□ 2.03
LSM6-207ENST00000515311 PCDH11YQ9BZA8 1340 aa27.73■■■□□ 2.03
LSM6-207ENST00000515311 EXOC5O00471 708 aa27.73■■■□□ 2.03
LSM6-207ENST00000515311 MTHFSDQ2M296 383 aaKnown RBP27.73■■■□□ 2.03
LSM6-207ENST00000515311 A0A0G2JS52 829 aa27.71■■■□□ 2.03
LSM6-207ENST00000515311 MYT1Q01538 1121 aa27.71■■■□□ 2.03
LSM6-207ENST00000515311 NFE2L2Q16236 605 aa27.71■■■□□ 2.03
LSM6-207ENST00000515311 SEPT12Q8IYM1 358 aa27.71■■■□□ 2.03
LSM6-207ENST00000515311 BRWD3Q6RI45 1802 aa27.71■■■□□ 2.03
LSM6-207ENST00000515311 APAF1O14727 1248 aa27.7■■■□□ 2.02
LSM6-207ENST00000515311 ZNF530Q6P9A1 599 aaPredicted RBP27.7■■■□□ 2.02
LSM6-207ENST00000515311 TMPOP42166 694 aaKnown RBP27.69■■■□□ 2.02
LSM6-207ENST00000515311 RGS12O14924 1447 aa27.68■■■□□ 2.02
LSM6-207ENST00000515311 CYP27B1O15528 508 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 PHKG2P15735 406 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 NCBP3Q53F19 620 aaKnown RBP27.67■■■□□ 2.02
LSM6-207ENST00000515311 AKAP4Q5JQC9 854 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 C1orf141Q5JVX7 400 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 IFNL2Q8IZJ0 200 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 MAP3K5Q99683 1374 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 ADAMTS7Q9UKP4 1686 aa27.67■■■□□ 2.02
LSM6-207ENST00000515311 VIRMAQ69YN4 1812 aaKnown RBP27.67■■■□□ 2.02
LSM6-207ENST00000515311 NGEFQ8N5V2 710 aa27.66■■■□□ 2.02
LSM6-207ENST00000515311 DDX54Q8TDD1 881 aaKnown RBP27.65■■■□□ 2.02
LSM6-207ENST00000515311 SCN11AQ9UI33 1791 aa27.64■■■□□ 2.02
LSM6-207ENST00000515311 GNAT3A8MTJ3 354 aa27.64■■■□□ 2.02
LSM6-207ENST00000515311 PDE3BQ13370 1112 aa27.64■■■□□ 2.02
LSM6-207ENST00000515311 HTATSF1O43719 755 aaKnown RBP27.63■■■□□ 2.01
LSM6-207ENST00000515311 HSP90AB1P08238 724 aaKnown RBP27.63■■■□□ 2.01
LSM6-207ENST00000515311 RIPK4P57078 832 aa27.63■■■□□ 2.01
LSM6-207ENST00000515311 NKX1-1Q15270 411 aaPredicted RBP27.63■■■□□ 2.01
LSM6-207ENST00000515311 LMOD3Q0VAK6 560 aa27.62■■■□□ 2.01
LSM6-207ENST00000515311 MARCH10Q8NA82 808 aaPredicted RBP27.62■■■□□ 2.01
LSM6-207ENST00000515311 RRP7AQ9Y3A4 280 aaKnown RBP27.62■■■□□ 2.01
LSM6-207ENST00000515311 CCDC27Q2M243 656 aa27.6■■■□□ 2.01
LSM6-207ENST00000515311 BCL9O00512 1426 aa27.59■■■□□ 2.01
LSM6-207ENST00000515311 TOGARAM1Q9Y4F4 1720 aa27.59■■■□□ 2.01
LSM6-207ENST00000515311 NEUROD2Q15784 382 aa27.59■■■□□ 2.01
LSM6-207ENST00000515311 KRT27Q7Z3Y8 459 aa27.59■■■□□ 2.01
LSM6-207ENST00000515311 DCAF5Q96JK2 942 aa27.59■■■□□ 2.01
LSM6-207ENST00000515311 KDM6AO15550 1401 aaPredicted RBP27.58■■■□□ 2.01
LSM6-207ENST00000515311 RTF1Q92541 710 aaKnown RBP27.58■■■□□ 2.01
LSM6-207ENST00000515311 TRIM35Q9UPQ4 493 aa27.58■■■□□ 2.01
LSM6-207ENST00000515311 DOT1LQ8TEK3 1739 aa27.58■■■□□ 2.01
LSM6-207ENST00000515311 CEMIPQ8WUJ3 1361 aa27.56■■■□□ 2
LSM6-207ENST00000515311 HNRNPUQ00839 825 aaKnown RBP eCLIP27.55■■■□□ 2
LSM6-207ENST00000515311 MPRIPQ6WCQ1 1025 aa27.55■■■□□ 2
LSM6-207ENST00000515311 MRC1P22897 1456 aa27.55■■■□□ 2
LSM6-207ENST00000515311 SIPA1L3O60292 1781 aaPredicted RBP27.54■■■□□ 2
LSM6-207ENST00000515311 IL17REQ8NFR9 667 aa27.54■■■□□ 2
LSM6-207ENST00000515311 SBF2Q86WG5 1849 aa27.53■■■□□ 2
LSM6-207ENST00000515311 RNMTO43148 476 aaKnown RBP27.53■■■□□ 2
LSM6-207ENST00000515311 ITGB4P16144 1822 aa27.53■■■□□ 2
LSM6-207ENST00000515311 SENP3-EIF4A1A0A087X0R7 540 aa27.52■■■□□ 2
LSM6-207ENST00000515311 MCM10Q7L590 875 aa27.52■■■□□ 2
LSM6-207ENST00000515311 WWC1Q8IX03 1113 aa27.52■■■□□ 2
LSM6-207ENST00000515311 ERVV-2B6SEH9 535 aa27.51■■□□□ 1.99
LSM6-207ENST00000515311 LGR6Q9HBX8 967 aa27.51■■□□□ 1.99
LSM6-207ENST00000515311 NHSQ6T4R5 1651 aa27.51■■□□□ 1.99
LSM6-207ENST00000515311 DCTN1Q14203 1278 aa27.5■■□□□ 1.99
LSM6-207ENST00000515311 ZNF521Q96K83 1311 aa27.49■■□□□ 1.99
LSM6-207ENST00000515311 CALD1Q05682 793 aaKnown RBP27.49■■□□□ 1.99
LSM6-207ENST00000515311 FAM196AQ6ZSG2 479 aa27.49■■□□□ 1.99
LSM6-207ENST00000515311 SALL2Q9Y467 1007 aaPredicted RBP27.49■■□□□ 1.99
LSM6-207ENST00000515311 FAM182BQ5T319 152 aa27.47■■□□□ 1.99
LSM6-207ENST00000515311 THUMPD2Q9BTF0 503 aaKnown RBP27.47■■□□□ 1.99
LSM6-207ENST00000515311 ZBED9Q6R2W3 1325 aa27.46■■□□□ 1.99
LSM6-207ENST00000515311 TEFQ10587 303 aa27.46■■□□□ 1.99
LSM6-207ENST00000515311 WDR63Q8IWG1 891 aa27.46■■□□□ 1.99
LSM6-207ENST00000515311 SLC52A2Q9HAB3 445 aa27.46■■□□□ 1.99
LSM6-207ENST00000515311 KAT6BQ8WYB5 2073 aa27.45■■□□□ 1.99
LSM6-207ENST00000515311 IL16Q14005 1332 aa27.44■■□□□ 1.98
LSM6-207ENST00000515311 CABP4P57796 275 aa27.44■■□□□ 1.98
LSM6-207ENST00000515311 EP400Q96L91 3159 aa27.43■■□□□ 1.98
LSM6-207ENST00000515311 PAPPAQ13219 1627 aa27.42■■□□□ 1.98
LSM6-207ENST00000515311 PRIM1P49642 420 aaKnown RBP27.42■■□□□ 1.98
LSM6-207ENST00000515311 TMOD3Q9NYL9 352 aa27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms