RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-223ENST00000508249 MEGF6O75095 1541 aa13.18□□□□□ -0.3
UBE2D3-223ENST00000508249 COL23A1Q86Y22 540 aaPredicted RBP13.17□□□□□ -0.3
UBE2D3-223ENST00000508249 C4BP0C0L5 1744 aa13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 MAP2P11137 1827 aaKnown RBP13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 KIF3CO14782 793 aa13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 GPBP1L1Q9HC44 474 aaPredicted RBP13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 TFCP2L1Q9NZI6 479 aa13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 KTN1Q86UP2 1357 aaKnown RBP13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 ITGB4P16144 1822 aa13.16□□□□□ -0.3
UBE2D3-223ENST00000508249 BRCA1P38398 1863 aaKnown RBP13.15□□□□□ -0.3
UBE2D3-223ENST00000508249 MSL1Q68DK7 614 aa13.15□□□□□ -0.3
UBE2D3-223ENST00000508249 ANKRD24Q8TF21 1146 aa13.15□□□□□ -0.3
UBE2D3-223ENST00000508249 EVC2Q86UK5 1308 aa13.14□□□□□ -0.31
UBE2D3-223ENST00000508249 CLSPNQ9HAW4 1339 aa13.14□□□□□ -0.31
UBE2D3-223ENST00000508249 DNAJC5GQ8N7S2 189 aa13.14□□□□□ -0.31
UBE2D3-223ENST00000508249 ZNF526Q8TF50 670 aaPredicted RBP13.14□□□□□ -0.31
UBE2D3-223ENST00000508249 ZNF692Q9BU19 519 aaPredicted RBP13.14□□□□□ -0.31
UBE2D3-223ENST00000508249 AMIGO3Q86WK7 504 aa13.13□□□□□ -0.31
UBE2D3-223ENST00000508249 NME9Q86XW9 330 aa13.13□□□□□ -0.31
UBE2D3-223ENST00000508249 PRIM1P49642 420 aaKnown RBP13.12□□□□□ -0.31
UBE2D3-223ENST00000508249 N4BP2Q86UW6 1770 aaPredicted RBP13.12□□□□□ -0.31
UBE2D3-223ENST00000508249 CD2APQ9Y5K6 639 aa13.11□□□□□ -0.31
UBE2D3-223ENST00000508249 PKD1L3Q7Z443 1732 aa13.1□□□□□ -0.31
UBE2D3-223ENST00000508249 TONSLQ96HA7 1378 aa13.1□□□□□ -0.31
UBE2D3-223ENST00000508249 DDX54Q8TDD1 881 aaKnown RBP13.1□□□□□ -0.31
UBE2D3-223ENST00000508249 L3MBTL2Q969R5 705 aa13.1□□□□□ -0.31
UBE2D3-223ENST00000508249 SIN3AQ96ST3 1273 aa13.1□□□□□ -0.31
UBE2D3-223ENST00000508249 CCNL1Q9UK58 526 aaPredicted RBP13.1□□□□□ -0.31
UBE2D3-223ENST00000508249 NEUROD1Q13562 356 aa13.09□□□□□ -0.31
UBE2D3-223ENST00000508249 EDC4Q6P2E9 1401 aaKnown RBP13.09□□□□□ -0.31
UBE2D3-223ENST00000508249 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.09□□□□□ -0.31
UBE2D3-223ENST00000508249 PCGF6Q9BYE7 350 aa13.09□□□□□ -0.31
UBE2D3-223ENST00000508249 IGSF1Q8N6C5 1336 aa13.09□□□□□ -0.31
UBE2D3-223ENST00000508249 A0A1W2PP64 1363 aa13.07□□□□□ -0.32
UBE2D3-223ENST00000508249 SYTL4Q96C24 671 aaPredicted RBP13.07□□□□□ -0.32
UBE2D3-223ENST00000508249 TIMELESSQ9UNS1 1208 aa13.07□□□□□ -0.32
UBE2D3-223ENST00000508249 PXDNLA1KZ92 1463 aa13.07□□□□□ -0.32
UBE2D3-223ENST00000508249 ARFGEF1Q9Y6D6 1849 aa13.06□□□□□ -0.32
UBE2D3-223ENST00000508249 APLP1P51693 650 aa13.06□□□□□ -0.32
UBE2D3-223ENST00000508249 IP6K1Q92551 441 aa13.06□□□□□ -0.32
UBE2D3-223ENST00000508249 WWC3Q9ULE0 1092 aa13.06□□□□□ -0.32
UBE2D3-223ENST00000508249 USP47Q96K76 1375 aa13.06□□□□□ -0.32
UBE2D3-223ENST00000508249 COL13A1Q5TAT6 717 aaPredicted RBP13.05□□□□□ -0.32
UBE2D3-223ENST00000508249 SMIM5Q71RC9 77 aa13.05□□□□□ -0.32
UBE2D3-223ENST00000508249 PALLDQ8WX93 1383 aa13.04□□□□□ -0.32
UBE2D3-223ENST00000508249 C4AP0C0L4 1744 aa13.03□□□□□ -0.32
UBE2D3-223ENST00000508249 MSH5O43196 834 aa13.03□□□□□ -0.32
UBE2D3-223ENST00000508249 MAP3K19Q56UN5 1328 aa13.03□□□□□ -0.32
UBE2D3-223ENST00000508249 TNRC6CQ9HCJ0 1690 aaKnown RBP13.02□□□□□ -0.32
UBE2D3-223ENST00000508249 HOXC9P31274 260 aa13.02□□□□□ -0.33
UBE2D3-223ENST00000508249 JMYQ8N9B5 988 aa13.02□□□□□ -0.33
UBE2D3-223ENST00000508249 ROCK2O75116 1388 aaKnown RBP13.02□□□□□ -0.33
UBE2D3-223ENST00000508249 COL5A3P25940 1745 aaPredicted RBP13.02□□□□□ -0.33
UBE2D3-223ENST00000508249 SBF1O95248 1867 aa13.02□□□□□ -0.33
UBE2D3-223ENST00000508249 FBLN1P23142 703 aa13.01□□□□□ -0.33
UBE2D3-223ENST00000508249 HTRA3P83110 453 aa13.01□□□□□ -0.33
UBE2D3-223ENST00000508249 ZCRB1Q8TBF4 217 aaKnown RBP13.01□□□□□ -0.33
UBE2D3-223ENST00000508249 LTV1Q96GA3 475 aaPredicted RBP13.01□□□□□ -0.33
UBE2D3-223ENST00000508249 C10orf71Q711Q0 1435 aa13.01□□□□□ -0.33
UBE2D3-223ENST00000508249 ANKRD26Q9UPS8 1709 aa13□□□□□ -0.33
UBE2D3-223ENST00000508249 TOMM70O94826 608 aa13□□□□□ -0.33
UBE2D3-223ENST00000508249 NMRK2Q9NPI5 230 aa13□□□□□ -0.33
UBE2D3-223ENST00000508249 ZNF831Q5JPB2 1677 aa12.99□□□□□ -0.33
UBE2D3-223ENST00000508249 NCAPD2Q15021 1401 aa12.99□□□□□ -0.33
UBE2D3-223ENST00000508249 RTL1A6NKG5 1358 aa12.99□□□□□ -0.33
UBE2D3-223ENST00000508249 SLC12A5Q9H2X9 1139 aa12.99□□□□□ -0.33
UBE2D3-223ENST00000508249 KIF20BQ96Q89 1820 aa12.98□□□□□ -0.33
UBE2D3-223ENST00000508249 NBPF6Q5VWK0 638 aa12.98□□□□□ -0.33
UBE2D3-223ENST00000508249 FLAD1Q8NFF5 587 aa12.98□□□□□ -0.33
UBE2D3-223ENST00000508249 KLRG1Q96E93 195 aa12.98□□□□□ -0.33
UBE2D3-223ENST00000508249 NBPF4Q96M43 638 aa12.98□□□□□ -0.33
UBE2D3-223ENST00000508249 NSD3Q9BZ95 1437 aa12.97□□□□□ -0.33
UBE2D3-223ENST00000508249 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.97□□□□□ -0.33
UBE2D3-223ENST00000508249 SLC24A1O60721 1099 aa12.97□□□□□ -0.33
UBE2D3-223ENST00000508249 USHBP1Q8N6Y0 703 aa12.97□□□□□ -0.33
UBE2D3-223ENST00000508249 KCPQ6ZWJ8 1503 aa12.97□□□□□ -0.33
UBE2D3-223ENST00000508249 CYP27B1O15528 508 aa12.96□□□□□ -0.33
UBE2D3-223ENST00000508249 LINC00116Q8NCU8 138 aa12.96□□□□□ -0.33
UBE2D3-223ENST00000508249 MYH14Q7Z406 1995 aaKnown RBP12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 CAPN15O75808 1086 aa12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 PHF14O94880 888 aa12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 PRELPP51888 382 aa12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 CCER1Q8TC90 406 aaPredicted RBP12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 CARD11Q9BXL7 1154 aa12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 ADAMTS7Q9UKP4 1686 aa12.95□□□□□ -0.34
UBE2D3-223ENST00000508249 CGNL1Q0VF96 1302 aa12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 PCDH11XQ9BZA7 1347 aa12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 PCDH11YQ9BZA8 1340 aa12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 SSFA2P28290 1259 aa12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 RBM46Q8TBY0 533 aaKnown RBP12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 AK7Q96M32 723 aa12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 KDRP35968 1356 aa12.94□□□□□ -0.34
UBE2D3-223ENST00000508249 ITPK1Q13572 414 aa12.93□□□□□ -0.34
UBE2D3-223ENST00000508249 HDGFL2Q7Z4V5 671 aaPredicted RBP12.93□□□□□ -0.34
UBE2D3-223ENST00000508249 TIAM2Q8IVF5 1701 aa12.93□□□□□ -0.34
UBE2D3-223ENST00000508249 MPRIPQ6WCQ1 1025 aa12.92□□□□□ -0.34
UBE2D3-223ENST00000508249 TMC1Q8TDI8 760 aa12.92□□□□□ -0.34
UBE2D3-223ENST00000508249 PIGBQ92521 554 aa12.92□□□□□ -0.34
UBE2D3-223ENST00000508249 PLEKHG2Q9H7P9 1386 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 200.8 ms