RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 C8orf37Q96NL8 207 aa9.53□□□□□ -0.88
NUP54-204ENST00000506098 STRN4Q9NRL3 753 aa9.53□□□□□ -0.88
NUP54-204ENST00000506098 NLRP2Q9NX02 1062 aa9.53□□□□□ -0.88
NUP54-204ENST00000506098 THRAP3Q9Y2W1 955 aaKnown RBP9.53□□□□□ -0.88
NUP54-204ENST00000506098 DISP2A7MBM2 1401 aa9.53□□□□□ -0.88
NUP54-204ENST00000506098 SPATA31A5Q5VU36 1347 aa9.53□□□□□ -0.88
NUP54-204ENST00000506098 SPATA31A7Q8IWB4 1347 aa9.53□□□□□ -0.88
NUP54-204ENST00000506098 OVOS2A0A0G2JMS6 1433 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 APAF1O14727 1248 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 ATRNO75882 1429 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 VPS72Q15906 364 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 MEX3CQ5U5Q3 659 aaKnown RBP9.52□□□□□ -0.89
NUP54-204ENST00000506098 TCP11L2Q8N4U5 519 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.52□□□□□ -0.89
NUP54-204ENST00000506098 KDM3BQ7LBC6 1761 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 AFF2P51816 1311 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 SPATA31A1Q5TZJ5 1347 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 MAPK8IP3Q9UPT6 1336 aa9.52□□□□□ -0.89
NUP54-204ENST00000506098 TOGARAM1Q9Y4F4 1720 aa9.51□□□□□ -0.89
NUP54-204ENST00000506098 NEFMP07197 916 aa9.51□□□□□ -0.89
NUP54-204ENST00000506098 TMPOP42166 694 aaKnown RBP9.51□□□□□ -0.89
NUP54-204ENST00000506098 NFE2L2Q16236 605 aa9.51□□□□□ -0.89
NUP54-204ENST00000506098 CCDC27Q2M243 656 aa9.51□□□□□ -0.89
NUP54-204ENST00000506098 USP21Q9UK80 565 aa9.51□□□□□ -0.89
NUP54-204ENST00000506098 ZBED9Q6R2W3 1325 aa9.51□□□□□ -0.89
NUP54-204ENST00000506098 IL2RBP14784 551 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 TATP17735 454 aaPredicted RBP9.5□□□□□ -0.89
NUP54-204ENST00000506098 HNRNPUQ00839 825 aaKnown RBP eCLIP9.5□□□□□ -0.89
NUP54-204ENST00000506098 AMOTQ4VCS5 1084 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 BARGINQ6ZT62 677 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 RAPGEF4Q8WZA2 1011 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 BCL11AQ9H165 835 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 DOT1LQ8TEK3 1739 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 ZNF521Q96K83 1311 aa9.5□□□□□ -0.89
NUP54-204ENST00000506098 MTHFSDQ2M296 383 aaKnown RBP9.49□□□□□ -0.89
NUP54-204ENST00000506098 PLEKHO1Q53GL0 409 aaPredicted RBP9.49□□□□□ -0.89
NUP54-204ENST00000506098 GAS2L2Q8NHY3 880 aa9.49□□□□□ -0.89
NUP54-204ENST00000506098 CDCA7Q9BWT1 371 aaPredicted RBP9.49□□□□□ -0.89
NUP54-204ENST00000506098 UBR2Q8IWV8 1755 aa9.48□□□□□ -0.89
NUP54-204ENST00000506098 HTATSF1O43719 755 aaKnown RBP9.48□□□□□ -0.89
NUP54-204ENST00000506098 RIPK4P57078 832 aa9.48□□□□□ -0.89
NUP54-204ENST00000506098 TRPC5Q9UL62 973 aaPredicted RBP9.48□□□□□ -0.89
NUP54-204ENST00000506098 TRIM35Q9UPQ4 493 aa9.48□□□□□ -0.89
NUP54-204ENST00000506098 TNS2Q63HR2 1409 aa9.48□□□□□ -0.89
NUP54-204ENST00000506098 PAPPAQ13219 1627 aa9.47□□□□□ -0.89
NUP54-204ENST00000506098 ONECUT3O60422 494 aaPredicted RBP9.47□□□□□ -0.89
NUP54-204ENST00000506098 AKAP4Q5JQC9 854 aa9.47□□□□□ -0.89
NUP54-204ENST00000506098 WWC1Q8IX03 1113 aa9.47□□□□□ -0.89
NUP54-204ENST00000506098 GJD4Q96KN9 370 aaPredicted RBP9.47□□□□□ -0.89
NUP54-204ENST00000506098 SPG7Q9UQ90 795 aa9.47□□□□□ -0.89
NUP54-204ENST00000506098 MAP3K5Q99683 1374 aa9.47□□□□□ -0.89
NUP54-204ENST00000506098 GNAT3A8MTJ3 354 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 KCNA4P22459 653 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 LMOD3Q0VAK6 560 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 ZNF772Q68DY9 489 aaPredicted RBP9.46□□□□□ -0.9
NUP54-204ENST00000506098 WDR63Q8IWG1 891 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 ZCRB1Q8TBF4 217 aaKnown RBP9.46□□□□□ -0.9
NUP54-204ENST00000506098 YTHDC1Q96MU7 727 aaKnown RBP9.46□□□□□ -0.9
NUP54-204ENST00000506098 QTRT2Q9H974 415 aaKnown RBP9.46□□□□□ -0.9
NUP54-204ENST00000506098 USP35Q9P2H5 1018 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 RRP7AQ9Y3A4 280 aaKnown RBP9.46□□□□□ -0.9
NUP54-204ENST00000506098 CEMIPQ8WUJ3 1361 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 MRC1P22897 1456 aa9.46□□□□□ -0.9
NUP54-204ENST00000506098 CYP27B1O15528 508 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 PDE3BQ13370 1112 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 NKX1-1Q15270 411 aaPredicted RBP9.45□□□□□ -0.9
NUP54-204ENST00000506098 NEUROD2Q15784 382 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 ZNF530Q6P9A1 599 aaPredicted RBP9.45□□□□□ -0.9
NUP54-204ENST00000506098 ILDR1Q86SU0 546 aaPredicted RBP9.45□□□□□ -0.9
NUP54-204ENST00000506098 IFNL2Q8IZJ0 200 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 IL16Q14005 1332 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 PCDH11XQ9BZA7 1347 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 PCDH11YQ9BZA8 1340 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 NHSQ6T4R5 1651 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 BTAF1O14981 1849 aa9.45□□□□□ -0.9
NUP54-204ENST00000506098 EXOC5O00471 708 aa9.44□□□□□ -0.9
NUP54-204ENST00000506098 PHKG2P15735 406 aa9.44□□□□□ -0.9
NUP54-204ENST00000506098 C1orf141Q5JVX7 400 aa9.44□□□□□ -0.9
NUP54-204ENST00000506098 TRMT2AQ8IZ69 625 aaKnown RBP9.44□□□□□ -0.9
NUP54-204ENST00000506098 CCDC9Q9Y3X0 531 aaKnown RBP9.44□□□□□ -0.9
NUP54-204ENST00000506098 SALL2Q9Y467 1007 aaPredicted RBP9.44□□□□□ -0.9
NUP54-204ENST00000506098 KDM6AO15550 1401 aaPredicted RBP9.44□□□□□ -0.9
NUP54-204ENST00000506098 TAF1LQ8IZX4 1826 aa9.43□□□□□ -0.9
NUP54-204ENST00000506098 LAMB4A4D0S4 1761 aa9.43□□□□□ -0.9
NUP54-204ENST00000506098 ZNF831Q5JPB2 1677 aa9.43□□□□□ -0.9
NUP54-204ENST00000506098 SENP3-EIF4A1A0A087X0R7 540 aa9.43□□□□□ -0.9
NUP54-204ENST00000506098 HSP90AB1P08238 724 aaKnown RBP9.43□□□□□ -0.9
NUP54-204ENST00000506098 CALD1Q05682 793 aaKnown RBP9.43□□□□□ -0.9
NUP54-204ENST00000506098 GOLGA2Q08379 1002 aa9.43□□□□□ -0.9
NUP54-204ENST00000506098 FAM98CQ17RN3 349 aaKnown RBP9.43□□□□□ -0.9
NUP54-204ENST00000506098 IL17REQ8NFR9 667 aa9.43□□□□□ -0.9
NUP54-204ENST00000506098 RTF1Q92541 710 aaKnown RBP9.43□□□□□ -0.9
NUP54-204ENST00000506098 RGS17Q9UGC6 210 aaPredicted RBP9.43□□□□□ -0.9
NUP54-204ENST00000506098 LY75O60449 1722 aa9.42□□□□□ -0.9
NUP54-204ENST00000506098 RNMTO43148 476 aaKnown RBP9.42□□□□□ -0.9
NUP54-204ENST00000506098 ZNF853P0CG23 659 aa9.42□□□□□ -0.9
NUP54-204ENST00000506098 RBM6P78332 1123 aaKnown RBP9.42□□□□□ -0.9
NUP54-204ENST00000506098 SLFN5Q08AF3 891 aa9.42□□□□□ -0.9
NUP54-204ENST00000506098 DDB1Q16531 1140 aa9.42□□□□□ -0.9
NUP54-204ENST00000506098 DCAF5Q96JK2 942 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms