RNA–Protein interactions for RNA: ENST00000504687.5

LMNA-220, Transcript of lamin A/C, humanhuman

TSL 4

Gene LMNA, Length 546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-220ENST00000504687 ROBO1Q9Y6N7 1651 aa17.16■□□□□ 0.34
LMNA-220ENST00000504687 MAP3K5Q99683 1374 aa17.15■□□□□ 0.34
LMNA-220ENST00000504687 HAP1P54257 671 aaPredicted RBP17.15■□□□□ 0.34
LMNA-220ENST00000504687 GNAT3A8MTJ3 354 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 PLIN1O60240 522 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 MS4A1P11836 297 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 AMOTQ4VCS5 1084 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 EXOC6Q8TAG9 804 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 MBIPQ9NS73 344 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 AXIN2Q9Y2T1 843 aa17.14■□□□□ 0.33
LMNA-220ENST00000504687 RTF1Q92541 710 aaKnown RBP17.13■□□□□ 0.33
LMNA-220ENST00000504687 SOS1Q07889 1333 aaPredicted RBP17.13■□□□□ 0.33
LMNA-220ENST00000504687 CEMIPQ8WUJ3 1361 aa17.13■□□□□ 0.33
LMNA-220ENST00000504687 FAM83GA6ND36 823 aa17.12■□□□□ 0.33
LMNA-220ENST00000504687 LTV1Q96GA3 475 aaPredicted RBP17.12■□□□□ 0.33
LMNA-220ENST00000504687 CRBNQ96SW2 442 aa17.12■□□□□ 0.33
LMNA-220ENST00000504687 THUMPD2Q9BTF0 503 aaKnown RBP17.12■□□□□ 0.33
LMNA-220ENST00000504687 PKD1L3Q7Z443 1732 aa17.11■□□□□ 0.33
LMNA-220ENST00000504687 VAMP4O75379 141 aa17.11■□□□□ 0.33
LMNA-220ENST00000504687 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.11■□□□□ 0.33
LMNA-220ENST00000504687 VIRMAQ69YN4 1812 aaKnown RBP17.11■□□□□ 0.33
LMNA-220ENST00000504687 KIF16BQ96L93 1317 aa17.11■□□□□ 0.33
LMNA-220ENST00000504687 ZC3H6P61129 1189 aaKnown RBP17.1■□□□□ 0.33
LMNA-220ENST00000504687 PLEKHO1Q53GL0 409 aaPredicted RBP17.1■□□□□ 0.33
LMNA-220ENST00000504687 C20orf194Q5TEA3 1177 aa17.1■□□□□ 0.33
LMNA-220ENST00000504687 ILDR1Q86SU0 546 aaPredicted RBP17.1■□□□□ 0.33
LMNA-220ENST00000504687 CCDC136Q96JN2 1154 aa17.1■□□□□ 0.33
LMNA-220ENST00000504687 DCTN1Q14203 1278 aa17.09■□□□□ 0.33
LMNA-220ENST00000504687 SSH1Q8WYL5 1049 aa17.09■□□□□ 0.33
LMNA-220ENST00000504687 ARHGAP45Q92619 1136 aa17.09■□□□□ 0.33
LMNA-220ENST00000504687 SIPA1L3O60292 1781 aaPredicted RBP17.08■□□□□ 0.33
LMNA-220ENST00000504687 KDM3BQ7LBC6 1761 aa17.08■□□□□ 0.33
LMNA-220ENST00000504687 AKAP4Q5JQC9 854 aa17.08■□□□□ 0.32
LMNA-220ENST00000504687 ZKSCAN2Q63HK3 967 aa17.08■□□□□ 0.32
LMNA-220ENST00000504687 MCM10Q7L590 875 aa17.08■□□□□ 0.32
LMNA-220ENST00000504687 LRRC59Q96AG4 307 aaKnown RBP17.08■□□□□ 0.32
LMNA-220ENST00000504687 PARP4Q9UKK3 1724 aaKnown RBP17.07■□□□□ 0.32
LMNA-220ENST00000504687 IPO8O15397 1037 aaKnown RBP17.07■□□□□ 0.32
LMNA-220ENST00000504687 TWISTNBQ3B726 338 aaPredicted RBP17.07■□□□□ 0.32
LMNA-220ENST00000504687 B4GALNT3Q6L9W6 998 aa17.07■□□□□ 0.32
LMNA-220ENST00000504687 SMC4Q9NTJ3 1288 aa17.07■□□□□ 0.32
LMNA-220ENST00000504687 CACNA1FO60840 1977 aa17.07■□□□□ 0.32
LMNA-220ENST00000504687 COL5A2P05997 1499 aaPredicted RBP17.06■□□□□ 0.32
LMNA-220ENST00000504687 USHBP1Q8N6Y0 703 aa17.06■□□□□ 0.32
LMNA-220ENST00000504687 IL17REQ8NFR9 667 aa17.06■□□□□ 0.32
LMNA-220ENST00000504687 CABLES1Q8TDN4 633 aa17.06■□□□□ 0.32
LMNA-220ENST00000504687 LAS1LQ9Y4W2 734 aaKnown RBP17.06■□□□□ 0.32
LMNA-220ENST00000504687 COL14A1Q05707 1796 aaKnown RBP17.06■□□□□ 0.32
LMNA-220ENST00000504687 COL16A1Q07092 1604 aaPredicted RBP17.06■□□□□ 0.32
LMNA-220ENST00000504687 ZBTB7CA1YPR0 619 aa17.05■□□□□ 0.32
LMNA-220ENST00000504687 SCN11AQ9UI33 1791 aa17.05■□□□□ 0.32
LMNA-220ENST00000504687 WDR17Q8IZU2 1322 aa17.04■□□□□ 0.32
LMNA-220ENST00000504687 CANXP27824 592 aaKnown RBP17.04■□□□□ 0.32
LMNA-220ENST00000504687 TAF7Q15545 349 aaPredicted RBP17.04■□□□□ 0.32
LMNA-220ENST00000504687 ATF7IPQ6VMQ6 1270 aa17.04■□□□□ 0.32
LMNA-220ENST00000504687 MRPL50Q8N5N7 158 aaKnown RBP17.04■□□□□ 0.32
LMNA-220ENST00000504687 C8orf58Q8NAV2 365 aa17.04■□□□□ 0.32
LMNA-220ENST00000504687 PHLPP1O60346 1717 aa17.04■□□□□ 0.32
LMNA-220ENST00000504687 HSPA1LP34931 641 aa17.03■□□□□ 0.32
LMNA-220ENST00000504687 TSPYL6Q8N831 410 aa17.03■□□□□ 0.32
LMNA-220ENST00000504687 DZIP1LQ8IYY4 767 aaKnown RBP17.02■□□□□ 0.32
LMNA-220ENST00000504687 FRAT1Q92837 279 aaPredicted RBP17.02■□□□□ 0.32
LMNA-220ENST00000504687 PRDM11Q9NQV5 511 aa17.02■□□□□ 0.32
LMNA-220ENST00000504687 TSPYL4Q9UJ04 414 aa17.02■□□□□ 0.32
LMNA-220ENST00000504687 MEGF6O75095 1541 aa17.01■□□□□ 0.31
LMNA-220ENST00000504687 TRIM27P14373 513 aa17.01■□□□□ 0.31
LMNA-220ENST00000504687 ZNF530Q6P9A1 599 aaPredicted RBP17.01■□□□□ 0.31
LMNA-220ENST00000504687 RAPGEF4Q8WZA2 1011 aa17.01■□□□□ 0.31
LMNA-220ENST00000504687 CHMP4AQ9BY43 222 aa17.01■□□□□ 0.31
LMNA-220ENST00000504687 KDM2BQ8NHM5 1336 aa17■□□□□ 0.31
LMNA-220ENST00000504687 MRC1P22897 1456 aa17■□□□□ 0.31
LMNA-220ENST00000504687 TATP17735 454 aaPredicted RBP17■□□□□ 0.31
LMNA-220ENST00000504687 MVPQ14764 893 aaKnown RBP17■□□□□ 0.31
LMNA-220ENST00000504687 CHRNA2Q15822 529 aa17■□□□□ 0.31
LMNA-220ENST00000504687 C1orf141Q5JVX7 400 aa17■□□□□ 0.31
LMNA-220ENST00000504687 BCL2L13Q9BXK5 485 aa17■□□□□ 0.31
LMNA-220ENST00000504687 NLRP2Q9NX02 1062 aa17■□□□□ 0.31
LMNA-220ENST00000504687 NOB1Q9ULX3 412 aaKnown RBP17■□□□□ 0.31
LMNA-220ENST00000504687 SPG7Q9UQ90 795 aa17■□□□□ 0.31
LMNA-220ENST00000504687 HOXB7P09629 217 aa16.99■□□□□ 0.31
LMNA-220ENST00000504687 PANK1Q8TE04 598 aa16.99■□□□□ 0.31
LMNA-220ENST00000504687 CLUAP1Q96AJ1 413 aa16.99■□□□□ 0.31
LMNA-220ENST00000504687 CARD10Q9BWT7 1032 aa16.99■□□□□ 0.31
LMNA-220ENST00000504687 PLCH1Q4KWH8 1693 aa16.99■□□□□ 0.31
LMNA-220ENST00000504687 RNMTO43148 476 aaKnown RBP16.98■□□□□ 0.31
LMNA-220ENST00000504687 RLBP1P12271 317 aa16.98■□□□□ 0.31
LMNA-220ENST00000504687 CENPQQ7L2Z9 268 aaPredicted RBP16.98■□□□□ 0.31
LMNA-220ENST00000504687 CHMP4BQ9H444 224 aaKnown RBP16.98■□□□□ 0.31
LMNA-220ENST00000504687 DDX19BQ9UMR2 479 aa16.98■□□□□ 0.31
LMNA-220ENST00000504687 CSB-PGBD3P0DP91 1061 aa16.97■□□□□ 0.31
LMNA-220ENST00000504687 FTSJ3Q8IY81 847 aaKnown RBP16.97■□□□□ 0.31
LMNA-220ENST00000504687 API5Q9BZZ5 524 aaKnown RBP16.97■□□□□ 0.31
LMNA-220ENST00000504687 COG6Q9Y2V7 657 aa16.97■□□□□ 0.31
LMNA-220ENST00000504687 ABCC4O15439 1325 aa16.96■□□□□ 0.31
LMNA-220ENST00000504687 PTPRCP08575 1304 aa16.96■□□□□ 0.31
LMNA-220ENST00000504687 HSP90AB1P08238 724 aaKnown RBP16.96■□□□□ 0.31
LMNA-220ENST00000504687 HEG1Q9ULI3 1381 aa16.96■□□□□ 0.31
LMNA-220ENST00000504687 N4BP2Q86UW6 1770 aaPredicted RBP16.96■□□□□ 0.31
LMNA-220ENST00000504687 SHANK3Q9BYB0 1731 aa16.96■□□□□ 0.3
LMNA-220ENST00000504687 PLEKHG5O94827 1062 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms