RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 SCN11AQ9UI33 1791 aa18.04■□□□□ 0.48
CPNE1-227ENST00000498056 KAT6BQ8WYB5 2073 aa18.03■□□□□ 0.48
CPNE1-227ENST00000498056 MAPK8IP3Q9UPT6 1336 aa18.03■□□□□ 0.48
CPNE1-227ENST00000498056 IL2RBP14784 551 aa18.03■□□□□ 0.48
CPNE1-227ENST00000498056 TATP17735 454 aaPredicted RBP18.03■□□□□ 0.48
CPNE1-227ENST00000498056 FAM98CQ17RN3 349 aaKnown RBP18.03■□□□□ 0.48
CPNE1-227ENST00000498056 CCDC146Q8IYE0 955 aa18.03■□□□□ 0.48
CPNE1-227ENST00000498056 ADAMTS8Q9UP79 889 aa18.03■□□□□ 0.48
CPNE1-227ENST00000498056 THRAP3Q9Y2W1 955 aaKnown RBP18.03■□□□□ 0.48
CPNE1-227ENST00000498056 TOGARAM1Q9Y4F4 1720 aa18.02■□□□□ 0.48
CPNE1-227ENST00000498056 NEFMP07197 916 aa18.01■□□□□ 0.47
CPNE1-227ENST00000498056 RGS17Q9UGC6 210 aaPredicted RBP18.01■□□□□ 0.47
CPNE1-227ENST00000498056 RGS12O14924 1447 aa18■□□□□ 0.47
CPNE1-227ENST00000498056 FCHSD2O94868 740 aa18■□□□□ 0.47
CPNE1-227ENST00000498056 BARGINQ6ZT62 677 aa18■□□□□ 0.47
CPNE1-227ENST00000498056 PLEKHG2Q9H7P9 1386 aa18■□□□□ 0.47
CPNE1-227ENST00000498056 ITGB4P16144 1822 aa18■□□□□ 0.47
CPNE1-227ENST00000498056 PNNQ9H307 717 aaKnown RBP17.99■□□□□ 0.47
CPNE1-227ENST00000498056 SBF2Q86WG5 1849 aa17.99■□□□□ 0.47
CPNE1-227ENST00000498056 RBM6P78332 1123 aaKnown RBP17.98■□□□□ 0.47
CPNE1-227ENST00000498056 POTEAQ6S8J7 498 aa17.98■□□□□ 0.47
CPNE1-227ENST00000498056 CDCA7Q9BWT1 371 aaPredicted RBP17.98■□□□□ 0.47
CPNE1-227ENST00000498056 ADAMTS7Q9UKP4 1686 aa17.97■□□□□ 0.47
CPNE1-227ENST00000498056 SIPA1L3O60292 1781 aaPredicted RBP17.96■□□□□ 0.47
CPNE1-227ENST00000498056 RXRBP28702 533 aa17.96■□□□□ 0.47
CPNE1-227ENST00000498056 RUNDC1Q96C34 613 aa17.96■□□□□ 0.47
CPNE1-227ENST00000498056 PCDH11XQ9BZA7 1347 aa17.96■□□□□ 0.46
CPNE1-227ENST00000498056 PCDH11YQ9BZA8 1340 aa17.96■□□□□ 0.46
CPNE1-227ENST00000498056 SENP3-EIF4A1A0A087X0R7 540 aa17.95■□□□□ 0.46
CPNE1-227ENST00000498056 DDB1Q16531 1140 aa17.95■□□□□ 0.46
CPNE1-227ENST00000498056 PLEKHF1Q96S99 279 aa17.95■□□□□ 0.46
CPNE1-227ENST00000498056 SPG7Q9UQ90 795 aa17.95■□□□□ 0.46
CPNE1-227ENST00000498056 NHSQ6T4R5 1651 aa17.94■□□□□ 0.46
CPNE1-227ENST00000498056 PLEKHO1Q53GL0 409 aaPredicted RBP17.94■□□□□ 0.46
CPNE1-227ENST00000498056 ZNF530Q6P9A1 599 aaPredicted RBP17.94■□□□□ 0.46
CPNE1-227ENST00000498056 PHACTR3Q96KR7 559 aa17.94■□□□□ 0.46
CPNE1-227ENST00000498056 MAP3K5Q99683 1374 aa17.93■□□□□ 0.46
CPNE1-227ENST00000498056 AMOTQ4VCS5 1084 aa17.93■□□□□ 0.46
CPNE1-227ENST00000498056 SEPT12Q8IYM1 358 aa17.93■□□□□ 0.46
CPNE1-227ENST00000498056 GAS2L2Q8NHY3 880 aa17.93■□□□□ 0.46
CPNE1-227ENST00000498056 MTHFSDQ2M296 383 aaKnown RBP17.92■□□□□ 0.46
CPNE1-227ENST00000498056 C1orf141Q5JVX7 400 aa17.92■□□□□ 0.46
CPNE1-227ENST00000498056 ZCRB1Q8TBF4 217 aaKnown RBP17.92■□□□□ 0.46
CPNE1-227ENST00000498056 RRP7AQ9Y3A4 280 aaKnown RBP17.92■□□□□ 0.46
CPNE1-227ENST00000498056 EXOC5O00471 708 aa17.91■□□□□ 0.46
CPNE1-227ENST00000498056 APAF1O14727 1248 aa17.9■□□□□ 0.46
CPNE1-227ENST00000498056 NFE2L2Q16236 605 aa17.9■□□□□ 0.46
CPNE1-227ENST00000498056 DDX54Q8TDD1 881 aaKnown RBP17.9■□□□□ 0.46
CPNE1-227ENST00000498056 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.9■□□□□ 0.46
CPNE1-227ENST00000498056 BTAF1O14981 1849 aa17.9■□□□□ 0.46
CPNE1-227ENST00000498056 NEUROD2Q15784 382 aa17.89■□□□□ 0.45
CPNE1-227ENST00000498056 KDM6AO15550 1401 aaPredicted RBP17.89■□□□□ 0.45
CPNE1-227ENST00000498056 MRC1P22897 1456 aa17.88■□□□□ 0.45
CPNE1-227ENST00000498056 PAPPAQ13219 1627 aa17.88■□□□□ 0.45
CPNE1-227ENST00000498056 CYP27B1O15528 508 aa17.88■□□□□ 0.45
CPNE1-227ENST00000498056 TMPOP42166 694 aaKnown RBP17.88■□□□□ 0.45
CPNE1-227ENST00000498056 PDE3BQ13370 1112 aa17.88■□□□□ 0.45
CPNE1-227ENST00000498056 TNS1Q9HBL0 1735 aaKnown RBP17.88■□□□□ 0.45
CPNE1-227ENST00000498056 KDM3BQ7LBC6 1761 aa17.88■□□□□ 0.45
CPNE1-227ENST00000498056 ONECUT3O60422 494 aaPredicted RBP17.87■□□□□ 0.45
CPNE1-227ENST00000498056 PHKG2P15735 406 aa17.87■□□□□ 0.45
CPNE1-227ENST00000498056 AKAP4Q5JQC9 854 aa17.87■□□□□ 0.45
CPNE1-227ENST00000498056 IFNL2Q8IZJ0 200 aa17.87■□□□□ 0.45
CPNE1-227ENST00000498056 RIPK4P57078 832 aa17.86■□□□□ 0.45
CPNE1-227ENST00000498056 HNRNPUQ00839 825 aaKnown RBP eCLIP17.86■□□□□ 0.45
CPNE1-227ENST00000498056 SALL2Q9Y467 1007 aaPredicted RBP17.86■□□□□ 0.45
CPNE1-227ENST00000498056 GNAT3A8MTJ3 354 aa17.85■□□□□ 0.45
CPNE1-227ENST00000498056 LMOD3Q0VAK6 560 aa17.85■□□□□ 0.45
CPNE1-227ENST00000498056 KRT27Q7Z3Y8 459 aa17.85■□□□□ 0.45
CPNE1-227ENST00000498056 RTF1Q92541 710 aaKnown RBP17.85■□□□□ 0.45
CPNE1-227ENST00000498056 YTHDC1Q96MU7 727 aaKnown RBP17.85■□□□□ 0.45
CPNE1-227ENST00000498056 UBR2Q8IWV8 1755 aa17.84■□□□□ 0.45
CPNE1-227ENST00000498056 FAM182BQ5T319 152 aa17.84■□□□□ 0.45
CPNE1-227ENST00000498056 MARCH10Q8NA82 808 aaPredicted RBP17.84■□□□□ 0.45
CPNE1-227ENST00000498056 HSP90AB1P08238 724 aaKnown RBP17.83■□□□□ 0.44
CPNE1-227ENST00000498056 MPRIPQ6WCQ1 1025 aa17.83■□□□□ 0.44
CPNE1-227ENST00000498056 DCTN1Q14203 1278 aa17.82■□□□□ 0.44
CPNE1-227ENST00000498056 MCM10Q7L590 875 aa17.82■□□□□ 0.44
CPNE1-227ENST00000498056 THUMPD2Q9BTF0 503 aaKnown RBP17.81■□□□□ 0.44
CPNE1-227ENST00000498056 EP400Q96L91 3159 aa17.81■□□□□ 0.44
CPNE1-227ENST00000498056 DCAF5Q96JK2 942 aa17.8■□□□□ 0.44
CPNE1-227ENST00000498056 CEMIPQ8WUJ3 1361 aa17.79■□□□□ 0.44
CPNE1-227ENST00000498056 LAMB4A4D0S4 1761 aa17.79■□□□□ 0.44
CPNE1-227ENST00000498056 RNMTO43148 476 aaKnown RBP17.79■□□□□ 0.44
CPNE1-227ENST00000498056 ACSBG1Q96GR2 724 aa17.79■□□□□ 0.44
CPNE1-227ENST00000498056 TRIM35Q9UPQ4 493 aa17.79■□□□□ 0.44
CPNE1-227ENST00000498056 C5P01031 1676 aa17.79■□□□□ 0.44
CPNE1-227ENST00000498056 LY75O60449 1722 aa17.78■□□□□ 0.44
CPNE1-227ENST00000498056 TEFQ10587 303 aa17.78■□□□□ 0.44
CPNE1-227ENST00000498056 NKX1-1Q15270 411 aaPredicted RBP17.78■□□□□ 0.44
CPNE1-227ENST00000498056 SYTL4Q96C24 671 aaPredicted RBP17.78■□□□□ 0.44
CPNE1-227ENST00000498056 BCL9O00512 1426 aa17.78■□□□□ 0.44
CPNE1-227ENST00000498056 RGPD3A6NKT7 1758 aaPredicted RBP17.78■□□□□ 0.44
CPNE1-227ENST00000498056 RGPD4Q7Z3J3 1758 aa17.78■□□□□ 0.44
CPNE1-227ENST00000498056 HTATSF1O43719 755 aaKnown RBP17.77■□□□□ 0.44
CPNE1-227ENST00000498056 LGR6Q9HBX8 967 aa17.77■□□□□ 0.44
CPNE1-227ENST00000498056 CCDC27Q2M243 656 aa17.76■□□□□ 0.43
CPNE1-227ENST00000498056 NGEFQ8N5V2 710 aa17.76■□□□□ 0.43
CPNE1-227ENST00000498056 IL17REQ8NFR9 667 aa17.76■□□□□ 0.43
CPNE1-227ENST00000498056 WWC1Q8IX03 1113 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms