RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 CRB1P82279 1406 aa13.89□□□□□ -0.19
CMSS1-208ENST00000496116 USP54Q70EL1 1684 aa13.89□□□□□ -0.19
CMSS1-208ENST00000496116 ANKRD45Q5TZF3 282 aa13.89□□□□□ -0.19
CMSS1-208ENST00000496116 MTHFSDQ2M296 383 aaKnown RBP13.88□□□□□ -0.19
CMSS1-208ENST00000496116 INTS3Q68E01 1043 aaKnown RBP13.88□□□□□ -0.19
CMSS1-208ENST00000496116 ANKLE2Q86XL3 938 aa13.88□□□□□ -0.19
CMSS1-208ENST00000496116 EYA1Q99502 592 aa13.88□□□□□ -0.19
CMSS1-208ENST00000496116 C22orf23Q9BZE7 217 aa13.88□□□□□ -0.19
CMSS1-208ENST00000496116 MFAP1P55081 439 aaKnown RBP13.88□□□□□ -0.19
CMSS1-208ENST00000496116 HTATSF1O43719 755 aaKnown RBP13.87□□□□□ -0.19
CMSS1-208ENST00000496116 BMP2KLQ5H9B9 411 aa13.87□□□□□ -0.19
CMSS1-208ENST00000496116 ABTB2Q8N961 1025 aa13.87□□□□□ -0.19
CMSS1-208ENST00000496116 CHD2O14647 1828 aaKnown RBP13.87□□□□□ -0.19
CMSS1-208ENST00000496116 TSPYL4Q9UJ04 414 aa13.87□□□□□ -0.19
CMSS1-208ENST00000496116 HOXC9P31274 260 aa13.86□□□□□ -0.19
CMSS1-208ENST00000496116 KRT24Q2M2I5 525 aa13.86□□□□□ -0.19
CMSS1-208ENST00000496116 ZNF142P52746 1687 aaPredicted RBP13.86□□□□□ -0.19
CMSS1-208ENST00000496116 SIRT2Q8IXJ6 389 aa13.85□□□□□ -0.19
CMSS1-208ENST00000496116 MARF1Q9Y4F3 1742 aaKnown RBP13.85□□□□□ -0.19
CMSS1-208ENST00000496116 FOXO3O43524 673 aa13.85□□□□□ -0.19
CMSS1-208ENST00000496116 RGS12O14924 1447 aa13.85□□□□□ -0.19
CMSS1-208ENST00000496116 RTL1A6NKG5 1358 aa13.84□□□□□ -0.19
CMSS1-208ENST00000496116 BCL11AQ9H165 835 aa13.84□□□□□ -0.19
CMSS1-208ENST00000496116 PHF8Q9UPP1 1060 aa13.84□□□□□ -0.19
CMSS1-208ENST00000496116 SLC4A2P04920 1241 aa13.84□□□□□ -0.19
CMSS1-208ENST00000496116 RPAP2Q8IXW5 612 aaPredicted RBP13.84□□□□□ -0.19
CMSS1-208ENST00000496116 TBC1D2Q9BYX2 928 aa13.84□□□□□ -0.19
CMSS1-208ENST00000496116 GNAT3A8MTJ3 354 aa13.83□□□□□ -0.2
CMSS1-208ENST00000496116 NUTM2GQ5VZR2 741 aa13.83□□□□□ -0.2
CMSS1-208ENST00000496116 C14orf37Q86TY3 774 aa13.83□□□□□ -0.2
CMSS1-208ENST00000496116 POTEDQ86YR6 584 aa13.83□□□□□ -0.2
CMSS1-208ENST00000496116 DCTPP1Q9H773 170 aa13.82□□□□□ -0.2
CMSS1-208ENST00000496116 MIS18AQ9NYP9 233 aa13.82□□□□□ -0.2
CMSS1-208ENST00000496116 EIF5BO60841 1220 aaKnown RBP13.82□□□□□ -0.2
CMSS1-208ENST00000496116 ANKRD44Q8N8A2 993 aa13.82□□□□□ -0.2
CMSS1-208ENST00000496116 SLKQ9H2G2 1235 aaPredicted RBP13.82□□□□□ -0.2
CMSS1-208ENST00000496116 RTN4Q9NQC3 1192 aaKnown RBP13.82□□□□□ -0.2
CMSS1-208ENST00000496116 LRRC37A3O60309 1634 aa13.82□□□□□ -0.2
CMSS1-208ENST00000496116 MSH6P52701 1360 aa13.81□□□□□ -0.2
CMSS1-208ENST00000496116 STK31Q9BXU1 1019 aa13.81□□□□□ -0.2
CMSS1-208ENST00000496116 FRAT2O75474 233 aaPredicted RBP13.81□□□□□ -0.2
CMSS1-208ENST00000496116 RBM25P49756 843 aaKnown RBP13.81□□□□□ -0.2
CMSS1-208ENST00000496116 BABAM1Q9NWV8 329 aa13.81□□□□□ -0.2
CMSS1-208ENST00000496116 SETD1BQ9UPS6 1966 aaKnown RBP13.8□□□□□ -0.2
CMSS1-208ENST00000496116 SOS1Q07889 1333 aaPredicted RBP13.8□□□□□ -0.2
CMSS1-208ENST00000496116 MAP3K5Q99683 1374 aa13.8□□□□□ -0.2
CMSS1-208ENST00000496116 LTN1O94822 1766 aa13.8□□□□□ -0.2
CMSS1-208ENST00000496116 CCT4P50991 539 aaKnown RBP13.8□□□□□ -0.2
CMSS1-208ENST00000496116 NWD1Q149M9 1564 aa13.8□□□□□ -0.2
CMSS1-208ENST00000496116 ADGRL3Q9HAR2 1447 aa13.8□□□□□ -0.2
CMSS1-208ENST00000496116 ATP10DQ9P241 1426 aa13.8□□□□□ -0.2
CMSS1-208ENST00000496116 GSE1Q14687 1217 aa13.79□□□□□ -0.2
CMSS1-208ENST00000496116 CEP85Q6P2H3 762 aa13.79□□□□□ -0.2
CMSS1-208ENST00000496116 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
CMSS1-208ENST00000496116 HSCBQ8IWL3 235 aa13.79□□□□□ -0.2
CMSS1-208ENST00000496116 LTV1Q96GA3 475 aaPredicted RBP13.79□□□□□ -0.2
CMSS1-208ENST00000496116 ANTXR1Q9H6X2 564 aa13.79□□□□□ -0.2
CMSS1-208ENST00000496116 HMMRO75330 724 aa13.78□□□□□ -0.2
CMSS1-208ENST00000496116 PSME1Q06323 249 aa13.78□□□□□ -0.2
CMSS1-208ENST00000496116 KCNH5Q8NCM2 988 aa13.78□□□□□ -0.2
CMSS1-208ENST00000496116 CACNA1FO60840 1977 aa13.78□□□□□ -0.2
CMSS1-208ENST00000496116 ESCO1Q5FWF5 840 aa13.78□□□□□ -0.2
CMSS1-208ENST00000496116 IP6K1Q92551 441 aa13.78□□□□□ -0.2
CMSS1-208ENST00000496116 ADAMTSL3P82987 1691 aa13.77□□□□□ -0.21
CMSS1-208ENST00000496116 TAF7Q15545 349 aaPredicted RBP13.77□□□□□ -0.21
CMSS1-208ENST00000496116 MEIS3Q99687 375 aa13.77□□□□□ -0.21
CMSS1-208ENST00000496116 CDC45O75419 566 aa13.76□□□□□ -0.21
CMSS1-208ENST00000496116 SLC4A10Q6U841 1118 aa13.76□□□□□ -0.21
CMSS1-208ENST00000496116 PLEKHM2Q8IWE5 1019 aa13.76□□□□□ -0.21
CMSS1-208ENST00000496116 TBC1D9Q6ZT07 1266 aa13.76□□□□□ -0.21
CMSS1-208ENST00000496116 FAM208AQ9UK61 1670 aaKnown RBP13.76□□□□□ -0.21
CMSS1-208ENST00000496116 NFAT5O94916 1531 aa13.76□□□□□ -0.21
CMSS1-208ENST00000496116 G2E3Q7L622 706 aa13.75□□□□□ -0.21
CMSS1-208ENST00000496116 IL17REQ8NFR9 667 aa13.75□□□□□ -0.21
CMSS1-208ENST00000496116 SNX21Q969T3 373 aa13.75□□□□□ -0.21
CMSS1-208ENST00000496116 NPHP4O75161 1426 aaPredicted RBP13.75□□□□□ -0.21
CMSS1-208ENST00000496116 FLIIQ13045 1269 aa13.75□□□□□ -0.21
CMSS1-208ENST00000496116 FKBP5Q13451 457 aaPredicted RBP13.74□□□□□ -0.21
CMSS1-208ENST00000496116 TTC22Q5TAA0 569 aa13.74□□□□□ -0.21
CMSS1-208ENST00000496116 RBM33Q96EV2 1170 aaKnown RBP13.74□□□□□ -0.21
CMSS1-208ENST00000496116 PHRF1Q9P1Y6 1649 aaKnown RBP13.74□□□□□ -0.21
CMSS1-208ENST00000496116 F6X3S4 739 aa13.73□□□□□ -0.21
CMSS1-208ENST00000496116 GNAI2P04899 355 aa13.73□□□□□ -0.21
CMSS1-208ENST00000496116 GSPT1P15170 499 aaKnown RBP13.73□□□□□ -0.21
CMSS1-208ENST00000496116 USHBP1Q8N6Y0 703 aa13.73□□□□□ -0.21
CMSS1-208ENST00000496116 GNAI3P08754 354 aa13.73□□□□□ -0.21
CMSS1-208ENST00000496116 CHMP4AQ9BY43 222 aa13.73□□□□□ -0.21
CMSS1-208ENST00000496116 CHMP5Q9NZZ3 219 aa13.73□□□□□ -0.21
CMSS1-208ENST00000496116 NBPF6Q5VWK0 638 aa13.72□□□□□ -0.21
CMSS1-208ENST00000496116 CASC1Q6TDU7 716 aa13.72□□□□□ -0.21
CMSS1-208ENST00000496116 SPRYD3Q8NCJ5 442 aa13.72□□□□□ -0.21
CMSS1-208ENST00000496116 NBPF4Q96M43 638 aa13.72□□□□□ -0.21
CMSS1-208ENST00000496116 CEMIPQ8WUJ3 1361 aa13.71□□□□□ -0.21
CMSS1-208ENST00000496116 PXDNLA1KZ92 1463 aa13.71□□□□□ -0.21
CMSS1-208ENST00000496116 HDGFL1Q5TGJ6 251 aa13.7□□□□□ -0.22
CMSS1-208ENST00000496116 C16orf71Q8IYS4 520 aaPredicted RBP13.7□□□□□ -0.22
CMSS1-208ENST00000496116 N4BP2Q86UW6 1770 aaPredicted RBP13.7□□□□□ -0.22
CMSS1-208ENST00000496116 ZBTB7CA1YPR0 619 aa13.7□□□□□ -0.22
CMSS1-208ENST00000496116 NECTIN2Q92692 538 aa13.7□□□□□ -0.22
CMSS1-208ENST00000496116 APBB1O00213 710 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms