RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 LRRC37A3O60309 1634 aa19.39■□□□□ 0.69
BRCA1-223ENST00000494123 RGS12O14924 1447 aa19.38■□□□□ 0.69
BRCA1-223ENST00000494123 OVOS2A0A0G2JMS6 1433 aa19.38■□□□□ 0.69
BRCA1-223ENST00000494123 EXOC5O00471 708 aa19.37■□□□□ 0.69
BRCA1-223ENST00000494123 FCHSD2O94868 740 aa19.37■□□□□ 0.69
BRCA1-223ENST00000494123 RSPH6AQ9H0K4 717 aa19.36■□□□□ 0.69
BRCA1-223ENST00000494123 PNNQ9H307 717 aaKnown RBP19.36■□□□□ 0.69
BRCA1-223ENST00000494123 NEFMP07197 916 aa19.36■□□□□ 0.69
BRCA1-223ENST00000494123 PRKAR2BP31323 418 aa19.36■□□□□ 0.69
BRCA1-223ENST00000494123 PDE3BQ13370 1112 aa19.36■□□□□ 0.69
BRCA1-223ENST00000494123 ZCRB1Q8TBF4 217 aaKnown RBP19.36■□□□□ 0.69
BRCA1-223ENST00000494123 TNS2Q63HR2 1409 aa19.35■□□□□ 0.69
BRCA1-223ENST00000494123 BRWD3Q6RI45 1802 aa19.35■□□□□ 0.69
BRCA1-223ENST00000494123 SPG7Q9UQ90 795 aa19.35■□□□□ 0.69
BRCA1-223ENST00000494123 PKD1L3Q7Z443 1732 aa19.35■□□□□ 0.69
BRCA1-223ENST00000494123 PLEKHG2Q9H7P9 1386 aa19.35■□□□□ 0.69
BRCA1-223ENST00000494123 PLEKHO1Q53GL0 409 aaPredicted RBP19.34■□□□□ 0.69
BRCA1-223ENST00000494123 PNISRQ8TF01 805 aaKnown RBP19.34■□□□□ 0.69
BRCA1-223ENST00000494123 ADAMTS8Q9UP79 889 aa19.34■□□□□ 0.69
BRCA1-223ENST00000494123 AMOTQ4VCS5 1084 aa19.33■□□□□ 0.69
BRCA1-223ENST00000494123 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.33■□□□□ 0.684e-6■■■■■ 27.4
BRCA1-223ENST00000494123 PCDH11XQ9BZA7 1347 aa19.32■□□□□ 0.68
BRCA1-223ENST00000494123 PCDH11YQ9BZA8 1340 aa19.32■□□□□ 0.68
BRCA1-223ENST00000494123 MAPK8IP3Q9UPT6 1336 aa19.32■□□□□ 0.68
BRCA1-223ENST00000494123 FAM9BQ8IZU0 186 aa19.32■□□□□ 0.68
BRCA1-223ENST00000494123 DDX54Q8TDD1 881 aaKnown RBP19.32■□□□□ 0.68
BRCA1-223ENST00000494123 SHANK3Q9BYB0 1731 aa19.31■□□□□ 0.68
BRCA1-223ENST00000494123 KRT27Q7Z3Y8 459 aa19.31■□□□□ 0.68
BRCA1-223ENST00000494123 ZNF530Q6P9A1 599 aaPredicted RBP19.29■□□□□ 0.68
BRCA1-223ENST00000494123 CCDC146Q8IYE0 955 aa19.29■□□□□ 0.68
BRCA1-223ENST00000494123 PHACTR3Q96KR7 559 aa19.29■□□□□ 0.68
BRCA1-223ENST00000494123 C1orf141Q5JVX7 400 aa19.28■□□□□ 0.68
BRCA1-223ENST00000494123 GAS2L2Q8NHY3 880 aa19.28■□□□□ 0.68
BRCA1-223ENST00000494123 RUNDC1Q96C34 613 aa19.28■□□□□ 0.68
BRCA1-223ENST00000494123 PLEKHF1Q96S99 279 aa19.28■□□□□ 0.68
BRCA1-223ENST00000494123 MTHFSDQ2M296 383 aaKnown RBP19.27■□□□□ 0.68
BRCA1-223ENST00000494123 IFNL2Q8IZJ0 200 aa19.27■□□□□ 0.68
BRCA1-223ENST00000494123 MARCH10Q8NA82 808 aaPredicted RBP19.27■□□□□ 0.68
BRCA1-223ENST00000494123 CYP27B1O15528 508 aa19.25■□□□□ 0.67
BRCA1-223ENST00000494123 FAM182BQ5T319 152 aa19.25■□□□□ 0.67
BRCA1-223ENST00000494123 PHKG2P15735 406 aa19.25■□□□□ 0.67
BRCA1-223ENST00000494123 AKAP4Q5JQC9 854 aa19.24■□□□□ 0.67
BRCA1-223ENST00000494123 HSP90AB1P08238 724 aaKnown RBP19.23■□□□□ 0.67
BRCA1-223ENST00000494123 FAM196AQ6ZSG2 479 aa19.22■□□□□ 0.67
BRCA1-223ENST00000494123 NFE2L2Q16236 605 aa19.22■□□□□ 0.67
BRCA1-223ENST00000494123 MAP3K5Q99683 1374 aa19.21■□□□□ 0.67
BRCA1-223ENST00000494123 GNAT3A8MTJ3 354 aa19.21■□□□□ 0.67
BRCA1-223ENST00000494123 DLG5Q8TDM6 1919 aa19.2■□□□□ 0.66
BRCA1-223ENST00000494123 DOT1LQ8TEK3 1739 aa19.2■□□□□ 0.66
BRCA1-223ENST00000494123 KAT6BQ8WYB5 2073 aa19.2■□□□□ 0.66
BRCA1-223ENST00000494123 NKX1-1Q15270 411 aaPredicted RBP19.19■□□□□ 0.66
BRCA1-223ENST00000494123 NEUROD2Q15784 382 aa19.19■□□□□ 0.66
BRCA1-223ENST00000494123 MPRIPQ6WCQ1 1025 aa19.19■□□□□ 0.66
BRCA1-223ENST00000494123 RTF1Q92541 710 aaKnown RBP19.19■□□□□ 0.66
BRCA1-223ENST00000494123 DCAF5Q96JK2 942 aa19.19■□□□□ 0.66
BRCA1-223ENST00000494123 RRP7AQ9Y3A4 280 aaKnown RBP19.19■□□□□ 0.66
BRCA1-223ENST00000494123 APAF1O14727 1248 aa19.18■□□□□ 0.66
BRCA1-223ENST00000494123 TMPOP42166 694 aaKnown RBP19.18■□□□□ 0.66
BRCA1-223ENST00000494123 RIPK4P57078 832 aa19.18■□□□□ 0.66
BRCA1-223ENST00000494123 ILDR2Q71H61 639 aa19.18■□□□□ 0.66
BRCA1-223ENST00000494123 VIRMAQ69YN4 1812 aaKnown RBP19.18■□□□□ 0.66
BRCA1-223ENST00000494123 BCL9O00512 1426 aa19.18■□□□□ 0.66
BRCA1-223ENST00000494123 ACSBG1Q96GR2 724 aa19.18■□□□□ 0.66
BRCA1-223ENST00000494123 SBF2Q86WG5 1849 aa19.17■□□□□ 0.66
BRCA1-223ENST00000494123 SYTL4Q96C24 671 aaPredicted RBP19.17■□□□□ 0.66
BRCA1-223ENST00000494123 SCN11AQ9UI33 1791 aa19.17■□□□□ 0.66
BRCA1-223ENST00000494123 TOGARAM1Q9Y4F4 1720 aa19.17■□□□□ 0.66
BRCA1-223ENST00000494123 KDM6AO15550 1401 aaPredicted RBP19.17■□□□□ 0.66
BRCA1-223ENST00000494123 LMOD3Q0VAK6 560 aa19.16■□□□□ 0.66
BRCA1-223ENST00000494123 RNMTO43148 476 aaKnown RBP19.15■□□□□ 0.66
BRCA1-223ENST00000494123 HTATSF1O43719 755 aaKnown RBP19.15■□□□□ 0.66
BRCA1-223ENST00000494123 NHSQ6T4R5 1651 aa19.15■□□□□ 0.66
BRCA1-223ENST00000494123 SENP3-EIF4A1A0A087X0R7 540 aa19.14■□□□□ 0.66
BRCA1-223ENST00000494123 ERVV-2B6SEH9 535 aa19.14■□□□□ 0.65
BRCA1-223ENST00000494123 PRIM1P49642 420 aaKnown RBP19.14■□□□□ 0.65
BRCA1-223ENST00000494123 MCM10Q7L590 875 aa19.14■□□□□ 0.65
BRCA1-223ENST00000494123 LGR6Q9HBX8 967 aa19.14■□□□□ 0.65
BRCA1-223ENST00000494123 ITGB4P16144 1822 aa19.14■□□□□ 0.65
BRCA1-223ENST00000494123 ADAMTS7Q9UKP4 1686 aa19.14■□□□□ 0.65
BRCA1-223ENST00000494123 TRIM37O94972 964 aa19.13■□□□□ 0.65
BRCA1-223ENST00000494123 CABP4P57796 275 aa19.13■□□□□ 0.65
BRCA1-223ENST00000494123 TEFQ10587 303 aa19.12■□□□□ 0.65
BRCA1-223ENST00000494123 DCTN1Q14203 1278 aa19.12■□□□□ 0.65
BRCA1-223ENST00000494123 IL17REQ8NFR9 667 aa19.12■□□□□ 0.65
BRCA1-223ENST00000494123 TMOD3Q9NYL9 352 aa19.12■□□□□ 0.65
BRCA1-223ENST00000494123 KCNQ2O43526 872 aa19.11■□□□□ 0.65
BRCA1-223ENST00000494123 BCL11BQ9C0K0 894 aaPredicted RBP19.11■□□□□ 0.65
BRCA1-223ENST00000494123 SALL2Q9Y467 1007 aaPredicted RBP19.11■□□□□ 0.65
BRCA1-223ENST00000494123 CEMIPQ8WUJ3 1361 aa19.1■□□□□ 0.65
BRCA1-223ENST00000494123 SLC52A2Q9HAB3 445 aa19.1■□□□□ 0.65
BRCA1-223ENST00000494123 EP400Q96L91 3159 aa19.1■□□□□ 0.65
BRCA1-223ENST00000494123 MRC1P22897 1456 aa19.09■□□□□ 0.65
BRCA1-223ENST00000494123 SF3B2Q13435 895 aaKnown RBP19.09■□□□□ 0.65
BRCA1-223ENST00000494123 NFATC2IPQ8NCF5 419 aa19.09■□□□□ 0.65
BRCA1-223ENST00000494123 TRIM35Q9UPQ4 493 aa19.09■□□□□ 0.65
BRCA1-223ENST00000494123 BTAF1O14981 1849 aa19.09■□□□□ 0.65
BRCA1-223ENST00000494123 NGEFQ8N5V2 710 aa19.08■□□□□ 0.65
BRCA1-223ENST00000494123 THUMPD2Q9BTF0 503 aaKnown RBP19.08■□□□□ 0.65
BRCA1-223ENST00000494123 PTF1AQ7RTS3 328 aa19.07■□□□□ 0.64
BRCA1-223ENST00000494123 PIGBQ92521 554 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms