RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SYCE3A1L190 88 aa19.56■□□□□ 0.72
CCDC88B-209ENST00000494080 MPRIPQ6WCQ1 1025 aa19.56■□□□□ 0.72
CCDC88B-209ENST00000494080 CFAP65Q6ZU64 1925 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-209ENST00000494080 DNAJC2Q99543 621 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-209ENST00000494080 TAF7Q15545 349 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-209ENST00000494080 LRRFIP1Q32MZ4 808 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-209ENST00000494080 RIMS2Q9UQ26 1411 aa19.55■□□□□ 0.72
CCDC88B-209ENST00000494080 EIF2AK4Q9P2K8 1649 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-209ENST00000494080 FOSBP53539 338 aa19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 WASHC4Q2M389 1173 aa19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 CWC22Q9HCG8 908 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 SPG7Q9UQ90 795 aa19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 GCC2Q8IWJ2 1684 aa19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 A0A1W2PP64 1363 aa19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 TTC21BQ7Z4L5 1316 aa19.54■□□□□ 0.72
CCDC88B-209ENST00000494080 ATP7AQ04656 1500 aa19.53■□□□□ 0.72
CCDC88B-209ENST00000494080 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-209ENST00000494080 SPC24Q8NBT2 197 aa19.53■□□□□ 0.72
CCDC88B-209ENST00000494080 RLBP1P12271 317 aa19.52■□□□□ 0.72
CCDC88B-209ENST00000494080 TPM4P67936 248 aa19.52■□□□□ 0.72
CCDC88B-209ENST00000494080 CBX1P83916 185 aa19.52■□□□□ 0.72
CCDC88B-209ENST00000494080 PPIP5K1Q6PFW1 1433 aa19.52■□□□□ 0.71
CCDC88B-209ENST00000494080 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.52■□□□□ 0.71
CCDC88B-209ENST00000494080 PHACTR3Q96KR7 559 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 NUTM1Q86Y26 1132 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 MAST1Q9Y2H9 1570 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 PIK3C2GO75747 1445 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 CPLX1O14810 134 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 CCDC27Q2M243 656 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 SASS6Q6UVJ0 657 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 DMRT2Q9Y5R5 561 aa19.51■□□□□ 0.71
CCDC88B-209ENST00000494080 FIBPO43427 364 aa19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 BICD2Q8TD16 824 aa19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 MAPK8IP2Q13387 824 aaPredicted RBP19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 IL16Q14005 1332 aa19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 C8orf58Q8NAV2 365 aa19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 ABCA8O94911 1581 aa19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 PTCD1O75127 700 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-209ENST00000494080 TRDNQ13061 729 aa19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 FLIIQ13045 1269 aa19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 VPS37DQ86XT2 251 aa19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 ERC1Q8IUD2 1116 aa19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 CCAR2Q8N163 923 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 EIF4A2Q14240 407 aaKnown RBP19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 AACSQ86V21 672 aa19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 TMX4Q9H1E5 349 aaPredicted RBP19.48■□□□□ 0.71
CCDC88B-209ENST00000494080 PUS7Q96PZ0 661 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 TSPYL6Q8N831 410 aa19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 G3V3G9 751 aa19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 ANXA1P04083 346 aa19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 DCAF8Q5TAQ9 597 aa19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 CPLX2Q6PUV4 134 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 TRIM5Q9C035 493 aa19.47■□□□□ 0.71
CCDC88B-209ENST00000494080 CWC27Q6UX04 472 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 LRRFIP2Q9Y608 721 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 KRT24Q2M2I5 525 aa19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 PDCL2Q8N4E4 241 aa19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 BAG4O95429 457 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 TPD52L1Q16890 204 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 YTHDC2Q9H6S0 1430 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 TPM3P06753 285 aa19.46■□□□□ 0.71
CCDC88B-209ENST00000494080 ZMYM3Q14202 1370 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 MCM2P49736 904 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 HOMER1Q86YM7 354 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 RASSF8Q8NHQ8 419 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 CCDC85AQ96PX6 553 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 CCDC66A2RUB6 948 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 KLHL40Q2TBA0 621 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 SYNE3Q6ZMZ3 975 aa19.45■□□□□ 0.7
CCDC88B-209ENST00000494080 KDM2BQ8NHM5 1336 aa19.44■□□□□ 0.7
CCDC88B-209ENST00000494080 MX1P20591 662 aa19.44■□□□□ 0.7
CCDC88B-209ENST00000494080 RALYLQ86SE5 291 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-209ENST00000494080 TEX35Q5T0J7 233 aa19.43■□□□□ 0.7
CCDC88B-209ENST00000494080 KRT28Q7Z3Y7 464 aa19.43■□□□□ 0.7
CCDC88B-209ENST00000494080 CREBRFQ8IUR6 639 aa19.43■□□□□ 0.7
CCDC88B-209ENST00000494080 UPF3BQ9BZI7 483 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-209ENST00000494080 LETM1O95202 739 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 KIF6Q6ZMV9 814 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 PSMA5P28066 241 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 AKAP17AQ02040 695 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 GOLGA6L1Q8N7Z2 621 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 NUTM2BA6NNL0 878 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 NUTM2EB1AL46 878 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 AMOTQ4VCS5 1084 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 NUTM2AQ8IVF1 878 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 FBXW7Q969H0 707 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 MEIS3Q99687 375 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 DYNC1I1O14576 645 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 TSHZ3Q63HK5 1081 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 NFXL1Q6ZNB6 911 aa19.42■□□□□ 0.7
CCDC88B-209ENST00000494080 ARHGEF5Q12774 1597 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 SAMD9LQ8IVG5 1584 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 DNAAF4Q8WXU2 420 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 CHMP4CQ96CF2 233 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 RBM27Q9P2N5 1060 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 NPATQ14207 1427 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 CHRNA2Q15822 529 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 CCDC34Q96HJ3 373 aa19.41■□□□□ 0.7
CCDC88B-209ENST00000494080 ADGBQ8N7X0 1667 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms