RNA–Protein interactions for RNA: ENST00000493940.2

HSPG2-212, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-212ENST00000493940 FLT4P35916 1363 aa17.44■□□□□ 0.38
HSPG2-212ENST00000493940 TNNT2P45379 298 aaPredicted RBP17.44■□□□□ 0.38
HSPG2-212ENST00000493940 KIF7Q2M1P5 1343 aa17.44■□□□□ 0.38
HSPG2-212ENST00000493940 ITGB4P16144 1822 aa17.43■□□□□ 0.38
HSPG2-212ENST00000493940 NBPF14Q5TI25 921 aa17.43■□□□□ 0.38
HSPG2-212ENST00000493940 PDGFDQ9GZP0 370 aaPredicted RBP17.43■□□□□ 0.38
HSPG2-212ENST00000493940 PPM1GO15355 546 aaPredicted RBP17.42■□□□□ 0.38
HSPG2-212ENST00000493940 TXNRD1Q16881 649 aa17.42■□□□□ 0.38
HSPG2-212ENST00000493940 CASZ1Q86V15 1759 aa17.42■□□□□ 0.38
HSPG2-212ENST00000493940 KIF24Q5T7B8 1368 aa17.41■□□□□ 0.38
HSPG2-212ENST00000493940 ZCRB1Q8TBF4 217 aaKnown RBP17.41■□□□□ 0.38
HSPG2-212ENST00000493940 WASHC2AQ641Q2 1341 aa17.41■□□□□ 0.38
HSPG2-212ENST00000493940 PKD1L3Q7Z443 1732 aa17.41■□□□□ 0.38
HSPG2-212ENST00000493940 NCAPD2Q15021 1401 aa17.4■□□□□ 0.38
HSPG2-212ENST00000493940 TOGARAM1Q9Y4F4 1720 aa17.4■□□□□ 0.38
HSPG2-212ENST00000493940 NSD2O96028 1365 aa17.4■□□□□ 0.38
HSPG2-212ENST00000493940 LY75O60449 1722 aa17.39■□□□□ 0.37
HSPG2-212ENST00000493940 EYA1Q99502 592 aa17.39■□□□□ 0.37
HSPG2-212ENST00000493940 TUBGCP6Q96RT7 1819 aa17.39■□□□□ 0.37
HSPG2-212ENST00000493940 PAPPAQ13219 1627 aa17.39■□□□□ 0.37
HSPG2-212ENST00000493940 PRIM1P49642 420 aaKnown RBP17.38■□□□□ 0.37
HSPG2-212ENST00000493940 LRRC4BQ9NT99 713 aa17.38■□□□□ 0.37
HSPG2-212ENST00000493940 PER1O15534 1290 aaPredicted RBP17.37■□□□□ 0.37
HSPG2-212ENST00000493940 SMG6Q86US8 1419 aaKnown RBP17.37■□□□□ 0.37
HSPG2-212ENST00000493940 CYP27B1O15528 508 aa17.36■□□□□ 0.37
HSPG2-212ENST00000493940 KCNQ4P56696 695 aa17.36■□□□□ 0.37
HSPG2-212ENST00000493940 EIF4A2Q14240 407 aaKnown RBP17.36■□□□□ 0.37
HSPG2-212ENST00000493940 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
HSPG2-212ENST00000493940 SPON1Q9HCB6 807 aa17.36■□□□□ 0.37
HSPG2-212ENST00000493940 TATP17735 454 aaPredicted RBP17.35■□□□□ 0.37
HSPG2-212ENST00000493940 RAPGEF4Q8WZA2 1011 aa17.35■□□□□ 0.37
HSPG2-212ENST00000493940 YY1P25490 414 aa17.33■□□□□ 0.36
HSPG2-212ENST00000493940 TAF1LQ8IZX4 1826 aa17.33■□□□□ 0.36
HSPG2-212ENST00000493940 SLC15A2Q16348 729 aa17.32■□□□□ 0.36
HSPG2-212ENST00000493940 MORC1Q86VD1 984 aa17.32■□□□□ 0.36
HSPG2-212ENST00000493940 SYTL4Q96C24 671 aaPredicted RBP17.32■□□□□ 0.36
HSPG2-212ENST00000493940 PPP1R1BQ9UD71 204 aaPredicted RBP17.32■□□□□ 0.36
HSPG2-212ENST00000493940 ZNF827Q17R98 1081 aa17.31■□□□□ 0.36
HSPG2-212ENST00000493940 KNSTRNQ9Y448 316 aa17.31■□□□□ 0.36
HSPG2-212ENST00000493940 VIRMAQ69YN4 1812 aaKnown RBP17.3■□□□□ 0.36
HSPG2-212ENST00000493940 QSER1Q2KHR3 1735 aa17.3■□□□□ 0.36
HSPG2-212ENST00000493940 IGSF1Q8N6C5 1336 aa17.28■□□□□ 0.36
HSPG2-212ENST00000493940 PCDH11XQ9BZA7 1347 aa17.28■□□□□ 0.36
HSPG2-212ENST00000493940 PCDH11YQ9BZA8 1340 aa17.28■□□□□ 0.36
HSPG2-212ENST00000493940 DCAF8L1A6NGE4 600 aa17.27■□□□□ 0.36
HSPG2-212ENST00000493940 ZBTB7AO95365 584 aa17.27■□□□□ 0.36
HSPG2-212ENST00000493940 AEBP1Q8IUX7 1158 aa17.27■□□□□ 0.36
HSPG2-212ENST00000493940 AKT1S1Q96B36 256 aa17.27■□□□□ 0.36
HSPG2-212ENST00000493940 STK32BQ9NY57 414 aa17.27■□□□□ 0.36
HSPG2-212ENST00000493940 NKX1-1Q15270 411 aaPredicted RBP17.26■□□□□ 0.35
HSPG2-212ENST00000493940 CC2D1BQ5T0F9 858 aaKnown RBP17.26■□□□□ 0.35
HSPG2-212ENST00000493940 ATF5Q9Y2D1 282 aaPredicted RBP17.26■□□□□ 0.35
HSPG2-212ENST00000493940 C5P01031 1676 aa17.26■□□□□ 0.35
HSPG2-212ENST00000493940 COL24A1Q17RW2 1714 aa17.25■□□□□ 0.35
HSPG2-212ENST00000493940 IL13P35225 146 aa17.25■□□□□ 0.35
HSPG2-212ENST00000493940 PTGER2P43116 358 aa17.25■□□□□ 0.35
HSPG2-212ENST00000493940 CNGB1Q14028 1251 aaPredicted RBP17.25■□□□□ 0.35
HSPG2-212ENST00000493940 MPRIPQ6WCQ1 1025 aa17.25■□□□□ 0.35
HSPG2-212ENST00000493940 PIGBQ92521 554 aa17.24■□□□□ 0.35
HSPG2-212ENST00000493940 PHKG2P15735 406 aa17.23■□□□□ 0.35
HSPG2-212ENST00000493940 MTHFSP49914 203 aa17.23■□□□□ 0.35
HSPG2-212ENST00000493940 SPG7Q9UQ90 795 aa17.23■□□□□ 0.35
HSPG2-212ENST00000493940 SLC27A3Q5K4L6 730 aa17.22■□□□□ 0.35
HSPG2-212ENST00000493940 SGIP1Q9BQI5 828 aa17.22■□□□□ 0.35
HSPG2-212ENST00000493940 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.22■□□□□ 0.35
HSPG2-212ENST00000493940 CCNL1Q9UK58 526 aaPredicted RBP17.21■□□□□ 0.35
HSPG2-212ENST00000493940 PNPLA7Q6ZV29 1317 aa17.21■□□□□ 0.34
HSPG2-212ENST00000493940 UBR3Q6ZT12 1888 aa17.2■□□□□ 0.34
HSPG2-212ENST00000493940 SCN11AQ9UI33 1791 aa17.2■□□□□ 0.34
HSPG2-212ENST00000493940 SULT6B1Q6IMI4 303 aa17.2■□□□□ 0.34
HSPG2-212ENST00000493940 SMIM5Q71RC9 77 aa17.2■□□□□ 0.34
HSPG2-212ENST00000493940 AMIGO3Q86WK7 504 aa17.19■□□□□ 0.34
HSPG2-212ENST00000493940 IFNL2Q8IZJ0 200 aa17.19■□□□□ 0.34
HSPG2-212ENST00000493940 ASAP1Q9ULH1 1129 aa17.19■□□□□ 0.34
HSPG2-212ENST00000493940 UTRNP46939 3433 aa17.18■□□□□ 0.34
HSPG2-212ENST00000493940 PALLDQ8WX93 1383 aa17.18■□□□□ 0.34
HSPG2-212ENST00000493940 KDM6AO15550 1401 aaPredicted RBP17.18■□□□□ 0.34
HSPG2-212ENST00000493940 C4BP0C0L5 1744 aa17.18■□□□□ 0.34
HSPG2-212ENST00000493940 COL3A1P02461 1466 aaPredicted RBP17.18■□□□□ 0.34
HSPG2-212ENST00000493940 KDRP35968 1356 aa17.17■□□□□ 0.34
HSPG2-212ENST00000493940 MYH14Q7Z406 1995 aaKnown RBP17.17■□□□□ 0.34
HSPG2-212ENST00000493940 NPC1L1Q9UHC9 1359 aa17.16■□□□□ 0.34
HSPG2-212ENST00000493940 MTFR1LQ9H019 292 aa17.16■□□□□ 0.34
HSPG2-212ENST00000493940 HMOX1P09601 288 aa17.15■□□□□ 0.34
HSPG2-212ENST00000493940 COL23A1Q86Y22 540 aaPredicted RBP17.15■□□□□ 0.34
HSPG2-212ENST00000493940 ATG3Q9NT62 314 aa17.15■□□□□ 0.34
HSPG2-212ENST00000493940 TFCP2L1Q9NZI6 479 aa17.15■□□□□ 0.34
HSPG2-212ENST00000493940 PLEKHO1Q53GL0 409 aaPredicted RBP17.14■□□□□ 0.33
HSPG2-212ENST00000493940 ZNF530Q6P9A1 599 aaPredicted RBP17.14■□□□□ 0.33
HSPG2-212ENST00000493940 SLC4A9Q96Q91 983 aa17.14■□□□□ 0.33
HSPG2-212ENST00000493940 SYT17Q9BSW7 474 aa17.14■□□□□ 0.33
HSPG2-212ENST00000493940 ITPK1Q13572 414 aa17.13■□□□□ 0.33
HSPG2-212ENST00000493940 TMOD3Q9NYL9 352 aa17.13■□□□□ 0.33
HSPG2-212ENST00000493940 COL5A3P25940 1745 aaPredicted RBP17.13■□□□□ 0.33
HSPG2-212ENST00000493940 LINC00116Q8NCU8 138 aa17.12■□□□□ 0.33
HSPG2-212ENST00000493940 FHDC1Q9C0D6 1143 aaPredicted RBP17.12■□□□□ 0.33
HSPG2-212ENST00000493940 PLEKHG2Q9H7P9 1386 aa17.12■□□□□ 0.33
HSPG2-212ENST00000493940 GOLGB1Q14789 3259 aaKnown RBP17.11■□□□□ 0.33
HSPG2-212ENST00000493940 LOC102724428A0A0B4J2F2 783 aa17.11■□□□□ 0.33
HSPG2-212ENST00000493940 DIAPH1O60610 1272 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms