RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 BARGINQ6ZT62 677 aa20.92■□□□□ 0.94
HPS4-216ENST00000493455 KDRP35968 1356 aa20.92■□□□□ 0.94
HPS4-216ENST00000493455 LRRC37A3O60309 1634 aa20.92■□□□□ 0.94
HPS4-216ENST00000493455 DISP2A7MBM2 1401 aa20.91■□□□□ 0.94
HPS4-216ENST00000493455 FCHSD2O94868 740 aa20.91■□□□□ 0.94
HPS4-216ENST00000493455 MAPK8IP3Q9UPT6 1336 aa20.91■□□□□ 0.94
HPS4-216ENST00000493455 THSD7AQ9UPZ6 1657 aa20.91■□□□□ 0.94
HPS4-216ENST00000493455 BRWD3Q6RI45 1802 aa20.9■□□□□ 0.94
HPS4-216ENST00000493455 SEPT12Q8IYM1 358 aa20.9■□□□□ 0.94
HPS4-216ENST00000493455 OVOS2A0A0G2JMS6 1433 aa20.89■□□□□ 0.94
HPS4-216ENST00000493455 DDB1Q16531 1140 aa20.89■□□□□ 0.93
HPS4-216ENST00000493455 CDCA7Q9BWT1 371 aaPredicted RBP20.89■□□□□ 0.93
HPS4-216ENST00000493455 PKD1L3Q7Z443 1732 aa20.89■□□□□ 0.93
HPS4-216ENST00000493455 SHANK3Q9BYB0 1731 aa20.88■□□□□ 0.93
HPS4-216ENST00000493455 PLEKHO1Q53GL0 409 aaPredicted RBP20.88■□□□□ 0.93
HPS4-216ENST00000493455 PNNQ9H307 717 aaKnown RBP20.88■□□□□ 0.93
HPS4-216ENST00000493455 EXOC5O00471 708 aa20.87■□□□□ 0.93
HPS4-216ENST00000493455 ZCRB1Q8TBF4 217 aaKnown RBP20.87■□□□□ 0.93
HPS4-216ENST00000493455 DDX54Q8TDD1 881 aaKnown RBP20.87■□□□□ 0.93
HPS4-216ENST00000493455 PHACTR3Q96KR7 559 aa20.87■□□□□ 0.93
HPS4-216ENST00000493455 SPG7Q9UQ90 795 aa20.87■□□□□ 0.93
HPS4-216ENST00000493455 RGS12O14924 1447 aa20.87■□□□□ 0.93
HPS4-216ENST00000493455 ZNF530Q6P9A1 599 aaPredicted RBP20.86■□□□□ 0.93
HPS4-216ENST00000493455 RUNDC1Q96C34 613 aa20.86■□□□□ 0.93
HPS4-216ENST00000493455 TNS2Q63HR2 1409 aa20.86■□□□□ 0.93
HPS4-216ENST00000493455 DLG5Q8TDM6 1919 aa20.85■□□□□ 0.93
HPS4-216ENST00000493455 MTHFSDQ2M296 383 aaKnown RBP20.85■□□□□ 0.93
HPS4-216ENST00000493455 PDE3BQ13370 1112 aa20.84■□□□□ 0.93
HPS4-216ENST00000493455 NEUROD2Q15784 382 aa20.84■□□□□ 0.93
HPS4-216ENST00000493455 PLEKHF1Q96S99 279 aa20.84■□□□□ 0.93
HPS4-216ENST00000493455 RRP7AQ9Y3A4 280 aaKnown RBP20.84■□□□□ 0.93
HPS4-216ENST00000493455 KAT6BQ8WYB5 2073 aa20.84■□□□□ 0.93
HPS4-216ENST00000493455 AMOTQ4VCS5 1084 aa20.83■□□□□ 0.93
HPS4-216ENST00000493455 FAM182BQ5T319 152 aa20.83■□□□□ 0.93
HPS4-216ENST00000493455 VIRMAQ69YN4 1812 aaKnown RBP20.83■□□□□ 0.92
HPS4-216ENST00000493455 PCDH11XQ9BZA7 1347 aa20.82■□□□□ 0.92
HPS4-216ENST00000493455 PCDH11YQ9BZA8 1340 aa20.82■□□□□ 0.92
HPS4-216ENST00000493455 C1orf141Q5JVX7 400 aa20.82■□□□□ 0.92
HPS4-216ENST00000493455 ONECUT3O60422 494 aaPredicted RBP20.81■□□□□ 0.92
HPS4-216ENST00000493455 GAS2L2Q8NHY3 880 aa20.81■□□□□ 0.92
HPS4-216ENST00000493455 SALL2Q9Y467 1007 aaPredicted RBP20.81■□□□□ 0.92
HPS4-216ENST00000493455 APAF1O14727 1248 aa20.8■□□□□ 0.92
HPS4-216ENST00000493455 CYP27B1O15528 508 aa20.79■□□□□ 0.92
HPS4-216ENST00000493455 KRT27Q7Z3Y8 459 aa20.79■□□□□ 0.92
HPS4-216ENST00000493455 IFNL2Q8IZJ0 200 aa20.79■□□□□ 0.92
HPS4-216ENST00000493455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.79■□□□□ 0.92
HPS4-216ENST00000493455 PHKG2P15735 406 aa20.78■□□□□ 0.92
HPS4-216ENST00000493455 NFE2L2Q16236 605 aa20.78■□□□□ 0.92
HPS4-216ENST00000493455 MARCH10Q8NA82 808 aaPredicted RBP20.78■□□□□ 0.92
HPS4-216ENST00000493455 RIPK4P57078 832 aa20.77■□□□□ 0.92
HPS4-216ENST00000493455 DOT1LQ8TEK3 1739 aa20.76■□□□□ 0.91
HPS4-216ENST00000493455 MAP3K5Q99683 1374 aa20.76■□□□□ 0.91
HPS4-216ENST00000493455 TMPOP42166 694 aaKnown RBP20.76■□□□□ 0.91
HPS4-216ENST00000493455 AKAP4Q5JQC9 854 aa20.76■□□□□ 0.91
HPS4-216ENST00000493455 MPRIPQ6WCQ1 1025 aa20.76■□□□□ 0.91
HPS4-216ENST00000493455 PLEKHG2Q9H7P9 1386 aa20.75■□□□□ 0.91
HPS4-216ENST00000493455 GNAT3A8MTJ3 354 aa20.75■□□□□ 0.91
HPS4-216ENST00000493455 RTF1Q92541 710 aaKnown RBP20.74■□□□□ 0.91
HPS4-216ENST00000493455 ACSBG1Q96GR2 724 aa20.74■□□□□ 0.91
HPS4-216ENST00000493455 SCN11AQ9UI33 1791 aa20.74■□□□□ 0.91
HPS4-216ENST00000493455 TOGARAM1Q9Y4F4 1720 aa20.73■□□□□ 0.91
HPS4-216ENST00000493455 DCTN1Q14203 1278 aa20.73■□□□□ 0.91
HPS4-216ENST00000493455 MCM10Q7L590 875 aa20.73■□□□□ 0.91
HPS4-216ENST00000493455 YTHDC1Q96MU7 727 aaKnown RBP20.73■□□□□ 0.91
HPS4-216ENST00000493455 SYTL4Q96C24 671 aaPredicted RBP20.72■□□□□ 0.91
HPS4-216ENST00000493455 HSP90AB1P08238 724 aaKnown RBP20.71■□□□□ 0.91
HPS4-216ENST00000493455 HNRNPUQ00839 825 aaKnown RBP eCLIP20.71■□□□□ 0.91
HPS4-216ENST00000493455 THUMPD2Q9BTF0 503 aaKnown RBP20.71■□□□□ 0.91
HPS4-216ENST00000493455 LGR6Q9HBX8 967 aa20.71■□□□□ 0.91
HPS4-216ENST00000493455 ITGB4P16144 1822 aa20.71■□□□□ 0.91
HPS4-216ENST00000493455 KDM6AO15550 1401 aaPredicted RBP20.7■□□□□ 0.9
HPS4-216ENST00000493455 SBF2Q86WG5 1849 aa20.7■□□□□ 0.9
HPS4-216ENST00000493455 RNMTO43148 476 aaKnown RBP20.69■□□□□ 0.9
HPS4-216ENST00000493455 LMOD3Q0VAK6 560 aa20.69■□□□□ 0.9
HPS4-216ENST00000493455 DCAF5Q96JK2 942 aa20.69■□□□□ 0.9
HPS4-216ENST00000493455 TEFQ10587 303 aa20.66■□□□□ 0.9
HPS4-216ENST00000493455 NKX1-1Q15270 411 aaPredicted RBP20.66■□□□□ 0.9
HPS4-216ENST00000493455 FAM196AQ6ZSG2 479 aa20.66■□□□□ 0.9
HPS4-216ENST00000493455 IL17REQ8NFR9 667 aa20.66■□□□□ 0.9
HPS4-216ENST00000493455 TRIM35Q9UPQ4 493 aa20.66■□□□□ 0.9
HPS4-216ENST00000493455 NHSQ6T4R5 1651 aa20.65■□□□□ 0.9
HPS4-216ENST00000493455 PRIM1P49642 420 aaKnown RBP20.65■□□□□ 0.9
HPS4-216ENST00000493455 CABP4P57796 275 aa20.65■□□□□ 0.9
HPS4-216ENST00000493455 LAS1LQ9Y4W2 734 aaKnown RBP20.65■□□□□ 0.9
HPS4-216ENST00000493455 ADAMTS7Q9UKP4 1686 aa20.64■□□□□ 0.9
HPS4-216ENST00000493455 KCNQ2O43526 872 aa20.64■□□□□ 0.89
HPS4-216ENST00000493455 TMOD3Q9NYL9 352 aa20.64■□□□□ 0.89
HPS4-216ENST00000493455 HTATSF1O43719 755 aaKnown RBP20.63■□□□□ 0.89
HPS4-216ENST00000493455 TRIM37O94972 964 aa20.63■□□□□ 0.89
HPS4-216ENST00000493455 SIPA1L3O60292 1781 aaPredicted RBP20.62■□□□□ 0.89
HPS4-216ENST00000493455 NFATC2IPQ8NCF5 419 aa20.62■□□□□ 0.89
HPS4-216ENST00000493455 BTAF1O14981 1849 aa20.62■□□□□ 0.89
HPS4-216ENST00000493455 ERVV-2B6SEH9 535 aa20.61■□□□□ 0.89
HPS4-216ENST00000493455 ILDR2Q71H61 639 aa20.61■□□□□ 0.89
HPS4-216ENST00000493455 PTF1AQ7RTS3 328 aa20.61■□□□□ 0.89
HPS4-216ENST00000493455 WWC1Q8IX03 1113 aa20.61■□□□□ 0.89
HPS4-216ENST00000493455 SLC52A2Q9HAB3 445 aa20.61■□□□□ 0.89
HPS4-216ENST00000493455 CEMIPQ8WUJ3 1361 aa20.59■□□□□ 0.89
HPS4-216ENST00000493455 MRC1P22897 1456 aa20.59■□□□□ 0.89
HPS4-216ENST00000493455 MIS18AQ9NYP9 233 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms