RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 PLEKHG2Q9H7P9 1386 aa27.23■■□□□ 1.95
SND1-214ENST00000489417 TATP17735 454 aaPredicted RBP27.23■■□□□ 1.95
SND1-214ENST00000489417 LARP1Q6PKG0 1096 aaKnown RBP27.23■■□□□ 1.95
SND1-214ENST00000489417 THUMPD2Q9BTF0 503 aaKnown RBP27.23■■□□□ 1.95
SND1-214ENST00000489417 SPATA31A6Q5VVP1 1343 aa27.22■■□□□ 1.95
SND1-214ENST00000489417 MAP3K5Q99683 1374 aa27.22■■□□□ 1.95
SND1-214ENST00000489417 HTATSF1O43719 755 aaKnown RBP27.22■■□□□ 1.95
SND1-214ENST00000489417 MEGF6O75095 1541 aa27.21■■□□□ 1.95
SND1-214ENST00000489417 CRB1P82279 1406 aa27.21■■□□□ 1.95
SND1-214ENST00000489417 DCTN1Q14203 1278 aa27.21■■□□□ 1.95
SND1-214ENST00000489417 RTF1Q92541 710 aaKnown RBP27.21■■□□□ 1.95
SND1-214ENST00000489417 GNAT3A8MTJ3 354 aa27.2■■□□□ 1.94
SND1-214ENST00000489417 ZNF530Q6P9A1 599 aaPredicted RBP27.19■■□□□ 1.94
SND1-214ENST00000489417 MCM10Q7L590 875 aa27.18■■□□□ 1.94
SND1-214ENST00000489417 NRAPQ86VF7 1730 aa27.17■■□□□ 1.94
SND1-214ENST00000489417 SUPT16HQ9Y5B9 1047 aaKnown RBP27.17■■□□□ 1.94
SND1-214ENST00000489417 IFT57Q9NWB7 429 aa27.16■■□□□ 1.94
SND1-214ENST00000489417 FANCIQ9NVI1 1328 aa27.16■■□□□ 1.94
SND1-214ENST00000489417 PARP4Q9UKK3 1724 aaKnown RBP27.16■■□□□ 1.94
SND1-214ENST00000489417 GNAI1P63096 354 aa27.16■■□□□ 1.94
SND1-214ENST00000489417 AKAP4Q5JQC9 854 aa27.16■■□□□ 1.94
SND1-214ENST00000489417 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.16■■□□□ 1.94
SND1-214ENST00000489417 RCAN3Q9UKA8 241 aa27.16■■□□□ 1.94
SND1-214ENST00000489417 NWD2Q9ULI1 1742 aa27.15■■□□□ 1.94
SND1-214ENST00000489417 LRRC37A3O60309 1634 aa27.15■■□□□ 1.94
SND1-214ENST00000489417 SLIT2O94813 1529 aa27.15■■□□□ 1.94
SND1-214ENST00000489417 OVOS2A0A0G2JMS6 1433 aa27.15■■□□□ 1.94
SND1-214ENST00000489417 TSR2Q969E8 191 aaKnown RBP27.15■■□□□ 1.94
SND1-214ENST00000489417 SPG7Q9UQ90 795 aa27.15■■□□□ 1.94
SND1-214ENST00000489417 LAS1LQ9Y4W2 734 aaKnown RBP27.15■■□□□ 1.94
SND1-214ENST00000489417 PKD1L3Q7Z443 1732 aa27.14■■□□□ 1.94
SND1-214ENST00000489417 LRP6O75581 1613 aa27.14■■□□□ 1.94
SND1-214ENST00000489417 ZNF853P0CG23 659 aa27.14■■□□□ 1.93
SND1-214ENST00000489417 C1orf141Q5JVX7 400 aa27.14■■□□□ 1.93
SND1-214ENST00000489417 FBXO41Q8TF61 875 aa27.14■■□□□ 1.93
SND1-214ENST00000489417 CFAP44Q96MT7 982 aa27.13■■□□□ 1.93
SND1-214ENST00000489417 IL2RBP14784 551 aa27.11■■□□□ 1.93
SND1-214ENST00000489417 IL17REQ8NFR9 667 aa27.1■■□□□ 1.93
SND1-214ENST00000489417 C8orf37Q96NL8 207 aa27.08■■□□□ 1.93
SND1-214ENST00000489417 MBIPQ9NS73 344 aa27.08■■□□□ 1.93
SND1-214ENST00000489417 USP35Q9P2H5 1018 aa27.08■■□□□ 1.93
SND1-214ENST00000489417 CEMIPQ8WUJ3 1361 aa27.08■■□□□ 1.93
SND1-214ENST00000489417 NGLY1Q96IV0 654 aa27.07■■□□□ 1.92
SND1-214ENST00000489417 CHL1O00533 1208 aa27.07■■□□□ 1.92
SND1-214ENST00000489417 EXOSC9Q06265 439 aaKnown RBP27.07■■□□□ 1.92
SND1-214ENST00000489417 RNF123Q5XPI4 1314 aa27.06■■□□□ 1.92
SND1-214ENST00000489417 PHKG2P15735 406 aa27.06■■□□□ 1.92
SND1-214ENST00000489417 IFNL2Q8IZJ0 200 aa27.06■■□□□ 1.92
SND1-214ENST00000489417 ZCRB1Q8TBF4 217 aaKnown RBP27.06■■□□□ 1.92
SND1-214ENST00000489417 GTF3C3Q9Y5Q9 886 aa27.06■■□□□ 1.92
SND1-214ENST00000489417 DISP2A7MBM2 1401 aa27.05■■□□□ 1.92
SND1-214ENST00000489417 MPRIPQ6WCQ1 1025 aa27.05■■□□□ 1.92
SND1-214ENST00000489417 LGR6Q9HBX8 967 aa27.05■■□□□ 1.92
SND1-214ENST00000489417 ADAMTS7Q9UKP4 1686 aa27.05■■□□□ 1.92
SND1-214ENST00000489417 RNMTO43148 476 aaKnown RBP27.04■■□□□ 1.92
SND1-214ENST00000489417 NEFLP07196 543 aa27.04■■□□□ 1.92
SND1-214ENST00000489417 CT47B1P0C2W7 299 aaPredicted RBP27.04■■□□□ 1.92
SND1-214ENST00000489417 UNC5CLQ8IV45 518 aa27.04■■□□□ 1.92
SND1-214ENST00000489417 SPATA31A1Q5TZJ5 1347 aa27.03■■□□□ 1.92
SND1-214ENST00000489417 MEX3CQ5U5Q3 659 aaKnown RBP27.03■■□□□ 1.92
SND1-214ENST00000489417 FNBP4Q8N3X1 1017 aaPredicted RBP27.03■■□□□ 1.92
SND1-214ENST00000489417 WNK3Q9BYP7 1800 aa27.03■■□□□ 1.92
SND1-214ENST00000489417 PCDH11XQ9BZA7 1347 aa27.03■■□□□ 1.92
SND1-214ENST00000489417 PCDH11YQ9BZA8 1340 aa27.03■■□□□ 1.92
SND1-214ENST00000489417 CYP27B1O15528 508 aa27.02■■□□□ 1.92
SND1-214ENST00000489417 SPATA31A5Q5VU36 1347 aa27.02■■□□□ 1.92
SND1-214ENST00000489417 SPATA31A7Q8IWB4 1347 aa27.02■■□□□ 1.92
SND1-214ENST00000489417 BCL9LQ86UU0 1499 aa27.02■■□□□ 1.92
SND1-214ENST00000489417 TAF7Q15545 349 aaPredicted RBP27.01■■□□□ 1.91
SND1-214ENST00000489417 BABAM1Q9NWV8 329 aa27.01■■□□□ 1.91
SND1-214ENST00000489417 TSPYL4Q9UJ04 414 aa27.01■■□□□ 1.91
SND1-214ENST00000489417 THRAP3Q9Y2W1 955 aaKnown RBP27.01■■□□□ 1.91
SND1-214ENST00000489417 HSP90AB1P08238 724 aaKnown RBP27■■□□□ 1.91
SND1-214ENST00000489417 SHANK3Q9BYB0 1731 aa27■■□□□ 1.91
SND1-214ENST00000489417 KDM6AO15550 1401 aaPredicted RBP26.99■■□□□ 1.91
SND1-214ENST00000489417 RRP1P56182 461 aaKnown RBP26.99■■□□□ 1.91
SND1-214ENST00000489417 TEFQ10587 303 aa26.99■■□□□ 1.91
SND1-214ENST00000489417 VIRMAQ69YN4 1812 aaKnown RBP26.99■■□□□ 1.91
SND1-214ENST00000489417 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.98■■□□□ 1.91
SND1-214ENST00000489417 DCAF5Q96JK2 942 aa26.98■■□□□ 1.91
SND1-214ENST00000489417 CDCA7Q9BWT1 371 aaPredicted RBP26.98■■□□□ 1.91
SND1-214ENST00000489417 MIS18AQ9NYP9 233 aa26.98■■□□□ 1.91
SND1-214ENST00000489417 CCDC9Q9Y3X0 531 aaKnown RBP26.98■■□□□ 1.91
SND1-214ENST00000489417 SCN11AQ9UI33 1791 aa26.97■■□□□ 1.91
SND1-214ENST00000489417 VPS72Q15906 364 aa26.97■■□□□ 1.91
SND1-214ENST00000489417 RARSP54136 660 aaKnown RBP26.96■■□□□ 1.91
SND1-214ENST00000489417 USP21Q9UK80 565 aa26.96■■□□□ 1.91
SND1-214ENST00000489417 BARGINQ6ZT62 677 aa26.94■■□□□ 1.9
SND1-214ENST00000489417 C8orf58Q8NAV2 365 aa26.94■■□□□ 1.9
SND1-214ENST00000489417 SIPA1L3O60292 1781 aaPredicted RBP26.94■■□□□ 1.9
SND1-214ENST00000489417 FKBP8Q14318 412 aa26.93■■□□□ 1.9
SND1-214ENST00000489417 NKX1-1Q15270 411 aaPredicted RBP26.93■■□□□ 1.9
SND1-214ENST00000489417 TSPYL6Q8N831 410 aa26.93■■□□□ 1.9
SND1-214ENST00000489417 DDX54Q8TDD1 881 aaKnown RBP26.93■■□□□ 1.9
SND1-214ENST00000489417 MRC1P22897 1456 aa26.93■■□□□ 1.9
SND1-214ENST00000489417 BCAR3O75815 825 aa26.92■■□□□ 1.9
SND1-214ENST00000489417 TWISTNBQ3B726 338 aaPredicted RBP26.92■■□□□ 1.9
SND1-214ENST00000489417 TNS2Q63HR2 1409 aa26.92■■□□□ 1.9
SND1-214ENST00000489417 ZNF428Q96B54 188 aa26.92■■□□□ 1.9
SND1-214ENST00000489417 AFF2P51816 1311 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms