RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 HDGFL2Q7Z4V5 671 aaPredicted RBP23.09■■□□□ 1.29
USP48-210ENST00000489108 COL23A1Q86Y22 540 aaPredicted RBP23.08■■□□□ 1.29
USP48-210ENST00000489108 ANKRD36BQ8N2N9 1353 aa23.08■■□□□ 1.29
USP48-210ENST00000489108 CCNL1Q9UK58 526 aaPredicted RBP23.07■■□□□ 1.28
USP48-210ENST00000489108 LY75O60449 1722 aa23.07■■□□□ 1.28
USP48-210ENST00000489108 NEUROD1Q13562 356 aa23.06■■□□□ 1.28
USP48-210ENST00000489108 NSD2O96028 1365 aa23.05■■□□□ 1.28
USP48-210ENST00000489108 DOT1LQ8TEK3 1739 aa23.05■■□□□ 1.28
USP48-210ENST00000489108 MSL1Q68DK7 614 aa23.04■■□□□ 1.28
USP48-210ENST00000489108 ZCRB1Q8TBF4 217 aaKnown RBP23.04■■□□□ 1.28
USP48-210ENST00000489108 EDC4Q6P2E9 1401 aaKnown RBP23.04■■□□□ 1.28
USP48-210ENST00000489108 ATP10DQ9P241 1426 aa23.03■■□□□ 1.28
USP48-210ENST00000489108 TERF2IPQ9NYB0 399 aa23.02■■□□□ 1.28
USP48-210ENST00000489108 FAM208AQ9UK61 1670 aaKnown RBP23.01■■□□□ 1.27
USP48-210ENST00000489108 FBLN1P23142 703 aa23.01■■□□□ 1.27
USP48-210ENST00000489108 A0A1W2PP64 1363 aa23■■□□□ 1.27
USP48-210ENST00000489108 RGPD2P0DJD1 1756 aa22.99■■□□□ 1.27
USP48-210ENST00000489108 HOXC9P31274 260 aa22.99■■□□□ 1.27
USP48-210ENST00000489108 GPBP1L1Q9HC44 474 aaPredicted RBP22.99■■□□□ 1.27
USP48-210ENST00000489108 USP47Q96K76 1375 aa22.99■■□□□ 1.27
USP48-210ENST00000489108 AMPHP49418 695 aa22.98■■□□□ 1.27
USP48-210ENST00000489108 CD2APQ9Y5K6 639 aa22.98■■□□□ 1.27
USP48-210ENST00000489108 MAP3K19Q56UN5 1328 aa22.98■■□□□ 1.27
USP48-210ENST00000489108 CARD11Q9BXL7 1154 aa22.97■■□□□ 1.27
USP48-210ENST00000489108 ZNF526Q8TF50 670 aaPredicted RBP22.96■■□□□ 1.27
USP48-210ENST00000489108 MEGF6O75095 1541 aa22.96■■□□□ 1.27
USP48-210ENST00000489108 COG3Q96JB2 828 aa22.95■■□□□ 1.26
USP48-210ENST00000489108 HSPA6P17066 643 aa22.94■■□□□ 1.26
USP48-210ENST00000489108 NBPF6Q5VWK0 638 aa22.93■■□□□ 1.26
USP48-210ENST00000489108 NBPF4Q96M43 638 aa22.93■■□□□ 1.26
USP48-210ENST00000489108 USHBP1Q8N6Y0 703 aa22.92■■□□□ 1.26
USP48-210ENST00000489108 FLAD1Q8NFF5 587 aa22.91■■□□□ 1.26
USP48-210ENST00000489108 PUS7Q96PZ0 661 aaKnown RBP22.91■■□□□ 1.26
USP48-210ENST00000489108 C5P01031 1676 aa22.9■■□□□ 1.26
USP48-210ENST00000489108 ADCY9O60503 1353 aa22.9■■□□□ 1.26
USP48-210ENST00000489108 WWC3Q9ULE0 1092 aa22.9■■□□□ 1.26
USP48-210ENST00000489108 CGNL1Q0VF96 1302 aa22.88■■□□□ 1.25
USP48-210ENST00000489108 RRS1Q15050 365 aaKnown RBP22.88■■□□□ 1.25
USP48-210ENST00000489108 RAPGEF4Q8WZA2 1011 aa22.88■■□□□ 1.25
USP48-210ENST00000489108 TAF1LQ8IZX4 1826 aa22.87■■□□□ 1.25
USP48-210ENST00000489108 MPRIPQ6WCQ1 1025 aa22.87■■□□□ 1.25
USP48-210ENST00000489108 AMIGO3Q86WK7 504 aa22.87■■□□□ 1.25
USP48-210ENST00000489108 HMGB2P26583 209 aaKnown RBP22.86■■□□□ 1.25
USP48-210ENST00000489108 SMIM5Q71RC9 77 aa22.86■■□□□ 1.25
USP48-210ENST00000489108 PALLDQ8WX93 1383 aa22.86■■□□□ 1.25
USP48-210ENST00000489108 IGSF1Q8N6C5 1336 aa22.85■■□□□ 1.25
USP48-210ENST00000489108 TATP17735 454 aaPredicted RBP22.85■■□□□ 1.25
USP48-210ENST00000489108 AK7Q96M32 723 aa22.83■■□□□ 1.25
USP48-210ENST00000489108 RTL1A6NKG5 1358 aa22.82■■□□□ 1.24
USP48-210ENST00000489108 KIF3CO14782 793 aa22.82■■□□□ 1.24
USP48-210ENST00000489108 PHF14O94880 888 aa22.82■■□□□ 1.24
USP48-210ENST00000489108 PCDH11XQ9BZA7 1347 aa22.82■■□□□ 1.24
USP48-210ENST00000489108 PCDH11YQ9BZA8 1340 aa22.82■■□□□ 1.24
USP48-210ENST00000489108 C4BP0C0L5 1744 aa22.81■■□□□ 1.24
USP48-210ENST00000489108 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.8■■□□□ 1.24
USP48-210ENST00000489108 CYP27B1O15528 508 aa22.8■■□□□ 1.24
USP48-210ENST00000489108 HSP90AB2PQ58FF8 381 aa22.8■■□□□ 1.24
USP48-210ENST00000489108 SMARCC1Q92922 1105 aaPredicted RBP22.8■■□□□ 1.24
USP48-210ENST00000489108 TESK2Q96S53 571 aa22.8■■□□□ 1.24
USP48-210ENST00000489108 GGNBP2Q9H3C7 697 aa22.8■■□□□ 1.24
USP48-210ENST00000489108 FYB1O15117 783 aa22.79■■□□□ 1.24
USP48-210ENST00000489108 ITGB4P16144 1822 aa22.78■■□□□ 1.24
USP48-210ENST00000489108 UBR3Q6ZT12 1888 aa22.78■■□□□ 1.24
USP48-210ENST00000489108 SMG6Q86US8 1419 aaKnown RBP22.78■■□□□ 1.24
USP48-210ENST00000489108 TOGARAM1Q9Y4F4 1720 aa22.78■■□□□ 1.24
USP48-210ENST00000489108 ST20-MTHFSA0A0A6YYL1 179 aa22.77■■□□□ 1.24
USP48-210ENST00000489108 PIGBQ92521 554 aa22.77■■□□□ 1.24
USP48-210ENST00000489108 INSRP06213 1382 aa22.75■■□□□ 1.23
USP48-210ENST00000489108 SSFA2P28290 1259 aa22.74■■□□□ 1.23
USP48-210ENST00000489108 LINC00116Q8NCU8 138 aa22.74■■□□□ 1.23
USP48-210ENST00000489108 APLP1P51693 650 aa22.73■■□□□ 1.23
USP48-210ENST00000489108 LOC102724428A0A0B4J2F2 783 aa22.72■■□□□ 1.23
USP48-210ENST00000489108 SIK1P57059 783 aa22.72■■□□□ 1.23
USP48-210ENST00000489108 DNAJC5GQ8N7S2 189 aa22.72■■□□□ 1.23
USP48-210ENST00000489108 NSD3Q9BZ95 1437 aa22.72■■□□□ 1.23
USP48-210ENST00000489108 MAP2P11137 1827 aaKnown RBP22.71■■□□□ 1.23
USP48-210ENST00000489108 NKX1-1Q15270 411 aaPredicted RBP22.7■■□□□ 1.22
USP48-210ENST00000489108 FLT4P35916 1363 aa22.69■■□□□ 1.22
USP48-210ENST00000489108 GNPATO15228 680 aa22.69■■□□□ 1.22
USP48-210ENST00000489108 SLC24A1O60721 1099 aa22.69■■□□□ 1.22
USP48-210ENST00000489108 TOMM70O94826 608 aa22.69■■□□□ 1.22
USP48-210ENST00000489108 ITPK1Q13572 414 aa22.69■■□□□ 1.22
USP48-210ENST00000489108 MMP10P09238 476 aa22.68■■□□□ 1.22
USP48-210ENST00000489108 ASAP1Q9ULH1 1129 aa22.68■■□□□ 1.22
USP48-210ENST00000489108 TONSLQ96HA7 1378 aa22.67■■□□□ 1.22
USP48-210ENST00000489108 BCS1LQ9Y276 419 aa22.67■■□□□ 1.22
USP48-210ENST00000489108 CICQ96RK0 1608 aaPredicted RBP22.67■■□□□ 1.22
USP48-210ENST00000489108 PKD1L3Q7Z443 1732 aa22.66■■□□□ 1.22
USP48-210ENST00000489108 A0A0G2JLW4 131 aa22.66■■□□□ 1.22
USP48-210ENST00000489108 ATP6V1AP38606 617 aa22.66■■□□□ 1.22
USP48-210ENST00000489108 SPG7Q9UQ90 795 aa22.66■■□□□ 1.22
USP48-210ENST00000489108 N4BP2Q86UW6 1770 aaPredicted RBP22.66■■□□□ 1.22
USP48-210ENST00000489108 KIF24Q5T7B8 1368 aa22.65■■□□□ 1.22
USP48-210ENST00000489108 ARHGAP27Q6ZUM4 889 aa22.65■■□□□ 1.22
USP48-210ENST00000489108 TMOD3Q9NYL9 352 aa22.65■■□□□ 1.22
USP48-210ENST00000489108 EMILIN1Q9Y6C2 1016 aa22.65■■□□□ 1.22
USP48-210ENST00000489108 PXDNLA1KZ92 1463 aa22.65■■□□□ 1.22
USP48-210ENST00000489108 TGFB2P61812 414 aa22.64■■□□□ 1.21
USP48-210ENST00000489108 NMRK2Q9NPI5 230 aa22.64■■□□□ 1.21
USP48-210ENST00000489108 KIAA1551Q9HCM1 1747 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms