RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 NUP188Q5SRE5 1749 aa23.15■■□□□ 1.3
VIM-205ENST00000485947 NHSQ6T4R5 1651 aa23.15■■□□□ 1.3
VIM-205ENST00000485947 KCNQ2O43526 872 aa23.14■■□□□ 1.29
VIM-205ENST00000485947 KNSTRNQ9Y448 316 aa23.14■■□□□ 1.29
VIM-205ENST00000485947 TXNRD1Q16881 649 aa23.13■■□□□ 1.29
VIM-205ENST00000485947 PROM2Q8N271 834 aa23.13■■□□□ 1.29
VIM-205ENST00000485947 ANKRD26Q9UPS8 1709 aa23.13■■□□□ 1.29
VIM-205ENST00000485947 PLEKHG2Q9H7P9 1386 aa23.13■■□□□ 1.29
VIM-205ENST00000485947 MEGF6O75095 1541 aa23.13■■□□□ 1.29
VIM-205ENST00000485947 NCAPD2Q15021 1401 aa23.12■■□□□ 1.29
VIM-205ENST00000485947 PPM1GO15355 546 aaPredicted RBP23.11■■□□□ 1.29
VIM-205ENST00000485947 ACSBG1Q96GR2 724 aa23.11■■□□□ 1.29
VIM-205ENST00000485947 PCDH11XQ9BZA7 1347 aa23.09■■□□□ 1.29
VIM-205ENST00000485947 PCDH11YQ9BZA8 1340 aa23.09■■□□□ 1.29
VIM-205ENST00000485947 HMGB2P26583 209 aaKnown RBP23.09■■□□□ 1.29
VIM-205ENST00000485947 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.09■■□□□ 1.29
VIM-205ENST00000485947 USHBP1Q8N6Y0 703 aa23.08■■□□□ 1.29
VIM-205ENST00000485947 RGPD2P0DJD1 1756 aa23.07■■□□□ 1.28
VIM-205ENST00000485947 SLC27A3Q5K4L6 730 aa23.07■■□□□ 1.28
VIM-205ENST00000485947 MORC1Q86VD1 984 aa23.07■■□□□ 1.28
VIM-205ENST00000485947 MAP2P11137 1827 aaKnown RBP23.06■■□□□ 1.28
VIM-205ENST00000485947 STK32BQ9NY57 414 aa23.06■■□□□ 1.28
VIM-205ENST00000485947 EYA1Q99502 592 aa23.05■■□□□ 1.28
VIM-205ENST00000485947 SPG7Q9UQ90 795 aa23.05■■□□□ 1.28
VIM-205ENST00000485947 PRIM1P49642 420 aaKnown RBP23.04■■□□□ 1.28
VIM-205ENST00000485947 AMER1Q5JTC6 1135 aaPredicted RBP23.04■■□□□ 1.28
VIM-205ENST00000485947 SPON1Q9HCB6 807 aa23.04■■□□□ 1.28
VIM-205ENST00000485947 TNNT2P45379 298 aaPredicted RBP23.03■■□□□ 1.28
VIM-205ENST00000485947 SLC15A2Q16348 729 aa23.03■■□□□ 1.28
VIM-205ENST00000485947 ANO8Q9HCE9 1232 aaPredicted RBP23.03■■□□□ 1.28
VIM-205ENST00000485947 UTRNP46939 3433 aa23.02■■□□□ 1.28
VIM-205ENST00000485947 ANP32CO43423 234 aa23.02■■□□□ 1.28
VIM-205ENST00000485947 EIF4A2Q14240 407 aaKnown RBP23.02■■□□□ 1.28
VIM-205ENST00000485947 PPP1R1BQ9UD71 204 aaPredicted RBP23.02■■□□□ 1.28
VIM-205ENST00000485947 BTAF1O14981 1849 aa23.01■■□□□ 1.27
VIM-205ENST00000485947 DCAF8L1A6NGE4 600 aa23.01■■□□□ 1.27
VIM-205ENST00000485947 PER1O15534 1290 aaPredicted RBP23.01■■□□□ 1.27
VIM-205ENST00000485947 NKX1-1Q15270 411 aaPredicted RBP23.01■■□□□ 1.27
VIM-205ENST00000485947 SYTL4Q96C24 671 aaPredicted RBP23.01■■□□□ 1.27
VIM-205ENST00000485947 SHANK3Q9BYB0 1731 aa23.01■■□□□ 1.27
VIM-205ENST00000485947 NPC1L1Q9UHC9 1359 aa23■■□□□ 1.27
VIM-205ENST00000485947 KAT6BQ8WYB5 2073 aa22.99■■□□□ 1.27
VIM-205ENST00000485947 CYP27B1O15528 508 aa22.99■■□□□ 1.27
VIM-205ENST00000485947 IGSF1Q8N6C5 1336 aa22.99■■□□□ 1.27
VIM-205ENST00000485947 PKD1L3Q7Z443 1732 aa22.96■■□□□ 1.27
VIM-205ENST00000485947 MIER1Q8N108 512 aa22.96■■□□□ 1.27
VIM-205ENST00000485947 ZNF784Q8NCA9 323 aaPredicted RBP22.96■■□□□ 1.27
VIM-205ENST00000485947 IFNL2Q8IZJ0 200 aa22.95■■□□□ 1.26
VIM-205ENST00000485947 DOT1LQ8TEK3 1739 aa22.95■■□□□ 1.26
VIM-205ENST00000485947 LRRC4BQ9NT99 713 aa22.95■■□□□ 1.26
VIM-205ENST00000485947 PAPPAQ13219 1627 aa22.93■■□□□ 1.26
VIM-205ENST00000485947 AMOTQ4VCS5 1084 aa22.93■■□□□ 1.26
VIM-205ENST00000485947 SMARCC1Q92922 1105 aaPredicted RBP22.93■■□□□ 1.26
VIM-205ENST00000485947 AKT1S1Q96B36 256 aa22.92■■□□□ 1.26
VIM-205ENST00000485947 CASZ1Q86V15 1759 aa22.91■■□□□ 1.26
VIM-205ENST00000485947 HSP90AB1P08238 724 aaKnown RBP22.91■■□□□ 1.26
VIM-205ENST00000485947 PLEKHO1Q53GL0 409 aaPredicted RBP22.91■■□□□ 1.26
VIM-205ENST00000485947 SLC16A10Q8TF71 515 aa22.91■■□□□ 1.26
VIM-205ENST00000485947 MTFR1LQ9H019 292 aa22.91■■□□□ 1.26
VIM-205ENST00000485947 PHKG2P15735 406 aa22.9■■□□□ 1.26
VIM-205ENST00000485947 PRKRIP1Q9H875 184 aaPredicted RBP22.9■■□□□ 1.26
VIM-205ENST00000485947 CCNL1Q9UK58 526 aaPredicted RBP22.9■■□□□ 1.26
VIM-205ENST00000485947 LY75O60449 1722 aa22.89■■□□□ 1.26
VIM-205ENST00000485947 IL13P35225 146 aa22.89■■□□□ 1.25
VIM-205ENST00000485947 IFFO2Q5TF58 517 aa22.89■■□□□ 1.25
VIM-205ENST00000485947 KDRP35968 1356 aa22.89■■□□□ 1.25
VIM-205ENST00000485947 MPRIPQ6WCQ1 1025 aa22.88■■□□□ 1.25
VIM-205ENST00000485947 CHD4Q14839 1912 aa22.88■■□□□ 1.25
VIM-205ENST00000485947 SENP3-EIF4A1A0A087X0R7 540 aa22.87■■□□□ 1.25
VIM-205ENST00000485947 MTHFSP49914 203 aa22.87■■□□□ 1.25
VIM-205ENST00000485947 ZNF827Q17R98 1081 aa22.86■■□□□ 1.25
VIM-205ENST00000485947 DCAF5Q96JK2 942 aa22.86■■□□□ 1.25
VIM-205ENST00000485947 PALLDQ8WX93 1383 aa22.86■■□□□ 1.25
VIM-205ENST00000485947 ERVV-2B6SEH9 535 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 CCER2I3L3R5 266 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 ZBTB7AO95365 584 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 RALBP1Q15311 655 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 CC2D1BQ5T0F9 858 aaKnown RBP22.85■■□□□ 1.25
VIM-205ENST00000485947 PIGBQ92521 554 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 PDGFDQ9GZP0 370 aaPredicted RBP22.85■■□□□ 1.25
VIM-205ENST00000485947 TMOD3Q9NYL9 352 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 TFCP2L1Q9NZI6 479 aa22.85■■□□□ 1.25
VIM-205ENST00000485947 PTGER2P43116 358 aa22.84■■□□□ 1.25
VIM-205ENST00000485947 C1QTNF8P60827 252 aa22.83■■□□□ 1.25
VIM-205ENST00000485947 SULT6B1Q6IMI4 303 aa22.83■■□□□ 1.25
VIM-205ENST00000485947 QSER1Q2KHR3 1735 aa22.82■■□□□ 1.24
VIM-205ENST00000485947 FLAD1Q8NFF5 587 aa22.82■■□□□ 1.24
VIM-205ENST00000485947 DIAPH1O60610 1272 aaKnown RBP22.81■■□□□ 1.24
VIM-205ENST00000485947 SGIP1Q9BQI5 828 aa22.81■■□□□ 1.24
VIM-205ENST00000485947 PNPLA7Q6ZV29 1317 aa22.81■■□□□ 1.24
VIM-205ENST00000485947 TOGARAM1Q9Y4F4 1720 aa22.8■■□□□ 1.24
VIM-205ENST00000485947 C1orf141Q5JVX7 400 aa22.8■■□□□ 1.24
VIM-205ENST00000485947 ZNF530Q6P9A1 599 aaPredicted RBP22.8■■□□□ 1.24
VIM-205ENST00000485947 ATF5Q9Y2D1 282 aaPredicted RBP22.8■■□□□ 1.24
VIM-205ENST00000485947 AEBP1Q8IUX7 1158 aa22.79■■□□□ 1.24
VIM-205ENST00000485947 ITGB4P16144 1822 aa22.78■■□□□ 1.24
VIM-205ENST00000485947 KCNQ4P56696 695 aa22.78■■□□□ 1.24
VIM-205ENST00000485947 LOC102724428A0A0B4J2F2 783 aa22.77■■□□□ 1.24
VIM-205ENST00000485947 SIK1P57059 783 aa22.77■■□□□ 1.24
VIM-205ENST00000485947 MYBBP1AQ9BQG0 1328 aaKnown RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms