RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 ERBB3P21860 1342 aa10.14□□□□□ -0.79
USP4-211ENST00000485450 TJP1Q07157 1748 aa10.14□□□□□ -0.79
USP4-211ENST00000485450 PLCB2Q00722 1185 aa10.13□□□□□ -0.79
USP4-211ENST00000485450 NME9Q86XW9 330 aa10.13□□□□□ -0.79
USP4-211ENST00000485450 PANK3Q9H999 370 aa10.13□□□□□ -0.79
USP4-211ENST00000485450 MEGF6O75095 1541 aa10.12□□□□□ -0.79
USP4-211ENST00000485450 IGSF1Q8N6C5 1336 aa10.12□□□□□ -0.79
USP4-211ENST00000485450 AFF2P51816 1311 aa10.11□□□□□ -0.79
USP4-211ENST00000485450 SENP3Q9H4L4 574 aaPredicted RBP10.11□□□□□ -0.79
USP4-211ENST00000485450 MAP3K19Q56UN5 1328 aa10.11□□□□□ -0.79
USP4-211ENST00000485450 HOXC9P31274 260 aa10.11□□□□□ -0.79
USP4-211ENST00000485450 ABTB2Q8N961 1025 aa10.11□□□□□ -0.79
USP4-211ENST00000485450 CARD10Q9BWT7 1032 aa10.11□□□□□ -0.79
USP4-211ENST00000485450 FAM43AQ8N2R8 423 aa10.1□□□□□ -0.79
USP4-211ENST00000485450 POLKQ9UBT6 870 aa10.1□□□□□ -0.79
USP4-211ENST00000485450 AXIN2Q9Y2T1 843 aa10.1□□□□□ -0.79
USP4-211ENST00000485450 LRP5O75197 1615 aa10.09□□□□□ -0.79
USP4-211ENST00000485450 B4GALNT3Q6L9W6 998 aa10.09□□□□□ -0.79
USP4-211ENST00000485450 N4BP2Q86UW6 1770 aaPredicted RBP10.09□□□□□ -0.79
USP4-211ENST00000485450 CDCA7Q9BWT1 371 aaPredicted RBP10.08□□□□□ -0.8
USP4-211ENST00000485450 ZRANB1Q9UGI0 708 aa10.08□□□□□ -0.8
USP4-211ENST00000485450 TRPC5Q9UL62 973 aaPredicted RBP10.08□□□□□ -0.8
USP4-211ENST00000485450 POTEAQ6S8J7 498 aa10.08□□□□□ -0.8
USP4-211ENST00000485450 COG3Q96JB2 828 aa10.08□□□□□ -0.8
USP4-211ENST00000485450 GTF2E1P29083 439 aaPredicted RBP10.07□□□□□ -0.8
USP4-211ENST00000485450 HNRNPUQ00839 825 aaKnown RBP eCLIP10.07□□□□□ -0.8
USP4-211ENST00000485450 GJD4Q96KN9 370 aaPredicted RBP10.07□□□□□ -0.8
USP4-211ENST00000485450 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.07□□□□□ -0.84e-6■■■■■ 27.4
USP4-211ENST00000485450 BCORQ6W2J9 1755 aa10.07□□□□□ -0.8
USP4-211ENST00000485450 RBM6P78332 1123 aaKnown RBP10.07□□□□□ -0.8
USP4-211ENST00000485450 RRP9O43818 475 aaKnown RBP10.06□□□□□ -0.8
USP4-211ENST00000485450 IL13P35225 146 aa10.06□□□□□ -0.8
USP4-211ENST00000485450 XPCQ01831 940 aaPredicted RBP10.06□□□□□ -0.8
USP4-211ENST00000485450 PAXIP1Q6ZW49 1069 aaPredicted RBP10.06□□□□□ -0.8
USP4-211ENST00000485450 NUTM2FA1L443 756 aa10.06□□□□□ -0.8
USP4-211ENST00000485450 NEFMP07197 916 aa10.06□□□□□ -0.8
USP4-211ENST00000485450 NLRP6P59044 892 aa10.06□□□□□ -0.8
USP4-211ENST00000485450 NKX1-1Q15270 411 aaPredicted RBP10.06□□□□□ -0.8
USP4-211ENST00000485450 RRAGDQ9NQL2 400 aaPredicted RBP10.06□□□□□ -0.8
USP4-211ENST00000485450 RALBP1Q15311 655 aa10.05□□□□□ -0.8
USP4-211ENST00000485450 UBR3Q6ZT12 1888 aa10.05□□□□□ -0.8
USP4-211ENST00000485450 KCPQ6ZWJ8 1503 aa10.05□□□□□ -0.8
USP4-211ENST00000485450 KIF13BQ9NQT8 1826 aa10.04□□□□□ -0.8
USP4-211ENST00000485450 USP21Q9UK80 565 aa10.03□□□□□ -0.8
USP4-211ENST00000485450 CABLES1Q8TDN4 633 aa10.03□□□□□ -0.8
USP4-211ENST00000485450 NAP1L2Q9ULW6 460 aaPredicted RBP10.03□□□□□ -0.8
USP4-211ENST00000485450 PPM1GO15355 546 aaPredicted RBP10.03□□□□□ -0.8
USP4-211ENST00000485450 C4AP0C0L4 1744 aa10.03□□□□□ -0.8
USP4-211ENST00000485450 C4BP0C0L5 1744 aa10.03□□□□□ -0.8
USP4-211ENST00000485450 NRXN2Q9P2S2 1712 aa10.03□□□□□ -0.8
USP4-211ENST00000485450 HSP90AA2PQ14568 343 aaPredicted RBP10.02□□□□□ -0.8
USP4-211ENST00000485450 GSE1Q14687 1217 aa10.02□□□□□ -0.81
USP4-211ENST00000485450 SCN7AQ01118 1682 aa10.02□□□□□ -0.81
USP4-211ENST00000485450 HAP1P54257 671 aaPredicted RBP10.02□□□□□ -0.81
USP4-211ENST00000485450 BTG4Q9NY30 223 aa10.02□□□□□ -0.81
USP4-211ENST00000485450 RGS3P49796 1198 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 CEMIPQ8WUJ3 1361 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 PPP2R1AP30153 589 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 TCP11L2Q8N4U5 519 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 TMC1Q8TDI8 760 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 GGNBP2Q9H3C7 697 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 KNSTRNQ9Y448 316 aa10.01□□□□□ -0.81
USP4-211ENST00000485450 MYBBP1AQ9BQG0 1328 aaKnown RBP10.01□□□□□ -0.81
USP4-211ENST00000485450 CHMP4BQ9H444 224 aaKnown RBP10□□□□□ -0.81
USP4-211ENST00000485450 KDM6AO15550 1401 aaPredicted RBP10□□□□□ -0.81
USP4-211ENST00000485450 KIAA1551Q9HCM1 1747 aa10□□□□□ -0.81
USP4-211ENST00000485450 EIF4A2Q14240 407 aaKnown RBP10□□□□□ -0.81
USP4-211ENST00000485450 PLEKHF1Q96S99 279 aa10□□□□□ -0.81
USP4-211ENST00000485450 LARP1Q6PKG0 1096 aaKnown RBP9.99□□□□□ -0.81
USP4-211ENST00000485450 ANKRD24Q8TF21 1146 aa9.99□□□□□ -0.81
USP4-211ENST00000485450 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP4-211ENST00000485450 CALD1Q05682 793 aaKnown RBP9.98□□□□□ -0.81
USP4-211ENST00000485450 CCDC125Q86Z20 511 aa9.98□□□□□ -0.81
USP4-211ENST00000485450 FRAT1Q92837 279 aaPredicted RBP9.98□□□□□ -0.81
USP4-211ENST00000485450 PRKRIP1Q9H875 184 aaPredicted RBP9.98□□□□□ -0.81
USP4-211ENST00000485450 QTRT2Q9H974 415 aaKnown RBP9.98□□□□□ -0.81
USP4-211ENST00000485450 PRDM11Q9NQV5 511 aa9.98□□□□□ -0.81
USP4-211ENST00000485450 EMILIN1Q9Y6C2 1016 aa9.98□□□□□ -0.81
USP4-211ENST00000485450 RXRBP28702 533 aa9.98□□□□□ -0.81
USP4-211ENST00000485450 LAS1LQ9Y4W2 734 aaKnown RBP9.98□□□□□ -0.81
USP4-211ENST00000485450 NGLY1Q96IV0 654 aa9.97□□□□□ -0.81
USP4-211ENST00000485450 C8orf37Q96NL8 207 aa9.97□□□□□ -0.81
USP4-211ENST00000485450 NBPF6Q5VWK0 638 aa9.97□□□□□ -0.81
USP4-211ENST00000485450 NBPF4Q96M43 638 aa9.97□□□□□ -0.81
USP4-211ENST00000485450 DLEC1Q9Y238 1755 aa9.97□□□□□ -0.81
USP4-211ENST00000485450 HEG1Q9ULI3 1381 aa9.96□□□□□ -0.81
USP4-211ENST00000485450 BBXQ8WY36 941 aaPredicted RBP9.96□□□□□ -0.82
USP4-211ENST00000485450 ANKRD36CQ5JPF3 1778 aa9.96□□□□□ -0.82
USP4-211ENST00000485450 ARFGEF2Q9Y6D5 1785 aa9.96□□□□□ -0.82
USP4-211ENST00000485450 CACNA1FO60840 1977 aa9.95□□□□□ -0.82
USP4-211ENST00000485450 HSP90AB2PQ58FF8 381 aa9.95□□□□□ -0.82
USP4-211ENST00000485450 DHX37Q8IY37 1157 aaKnown RBP9.95□□□□□ -0.82
USP4-211ENST00000485450 EYA1Q99502 592 aa9.95□□□□□ -0.82
USP4-211ENST00000485450 LAMB2P55268 1798 aa9.95□□□□□ -0.82
USP4-211ENST00000485450 ZBED9Q6R2W3 1325 aa9.95□□□□□ -0.82
USP4-211ENST00000485450 ILDR2Q71H61 639 aa9.95□□□□□ -0.82
USP4-211ENST00000485450 NPM2Q86SE8 214 aaKnown RBP9.94□□□□□ -0.82
USP4-211ENST00000485450 MORC1Q86VD1 984 aa9.94□□□□□ -0.82
USP4-211ENST00000485450 ZC3H6P61129 1189 aaKnown RBP9.94□□□□□ -0.82
USP4-211ENST00000485450 RRS1Q15050 365 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms