RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 PAPPAQ13219 1627 aa24.15■■□□□ 1.46
ECHDC1-216ENST00000479525 PPM1GO15355 546 aaPredicted RBP24.15■■□□□ 1.46
ECHDC1-216ENST00000479525 KCNQ4P56696 695 aa24.15■■□□□ 1.46
ECHDC1-216ENST00000479525 ANKRD26Q9UPS8 1709 aa24.14■■□□□ 1.45
ECHDC1-216ENST00000479525 TUBGCP6Q96RT7 1819 aa24.14■■□□□ 1.45
ECHDC1-216ENST00000479525 SPON1Q9HCB6 807 aa24.14■■□□□ 1.45
ECHDC1-216ENST00000479525 STK32BQ9NY57 414 aa24.13■■□□□ 1.45
ECHDC1-216ENST00000479525 PPP1R1BQ9UD71 204 aaPredicted RBP24.13■■□□□ 1.45
ECHDC1-216ENST00000479525 ATF5Q9Y2D1 282 aaPredicted RBP24.13■■□□□ 1.45
ECHDC1-216ENST00000479525 SMG6Q86US8 1419 aaKnown RBP24.12■■□□□ 1.45
ECHDC1-216ENST00000479525 ZCRB1Q8TBF4 217 aaKnown RBP24.12■■□□□ 1.45
ECHDC1-216ENST00000479525 FLT4P35916 1363 aa24.11■■□□□ 1.45
ECHDC1-216ENST00000479525 TNNT2P45379 298 aaPredicted RBP24.11■■□□□ 1.45
ECHDC1-216ENST00000479525 PRIM1P49642 420 aaKnown RBP24.11■■□□□ 1.45
ECHDC1-216ENST00000479525 SLC15A2Q16348 729 aa24.11■■□□□ 1.45
ECHDC1-216ENST00000479525 LRRC4BQ9NT99 713 aa24.11■■□□□ 1.45
ECHDC1-216ENST00000479525 ZNF827Q17R98 1081 aa24.1■■□□□ 1.45
ECHDC1-216ENST00000479525 INSRP06213 1382 aa24.09■■□□□ 1.45
ECHDC1-216ENST00000479525 LY75O60449 1722 aa24.09■■□□□ 1.45
ECHDC1-216ENST00000479525 EIF4G2P78344 907 aaKnown RBP eCLIP24.09■■□□□ 1.45
ECHDC1-216ENST00000479525 TOGARAM1Q9Y4F4 1720 aa24.08■■□□□ 1.44
ECHDC1-216ENST00000479525 NSD2O96028 1365 aa24.08■■□□□ 1.44
ECHDC1-216ENST00000479525 RAPGEF4Q8WZA2 1011 aa24.06■■□□□ 1.44
ECHDC1-216ENST00000479525 ITGB4P16144 1822 aa24.06■■□□□ 1.44
ECHDC1-216ENST00000479525 TATP17735 454 aaPredicted RBP24.05■■□□□ 1.44
ECHDC1-216ENST00000479525 PKD1L3Q7Z443 1732 aa24.04■■□□□ 1.44
ECHDC1-216ENST00000479525 CGNL1Q0VF96 1302 aa24.04■■□□□ 1.44
ECHDC1-216ENST00000479525 PANK3Q9H999 370 aa24.03■■□□□ 1.44
ECHDC1-216ENST00000479525 PTGER2P43116 358 aa24.02■■□□□ 1.44
ECHDC1-216ENST00000479525 POLKQ9UBT6 870 aa24■■□□□ 1.43
ECHDC1-216ENST00000479525 QSER1Q2KHR3 1735 aa23.99■■□□□ 1.43
ECHDC1-216ENST00000479525 KIF24Q5T7B8 1368 aa23.98■■□□□ 1.43
ECHDC1-216ENST00000479525 CYP27B1O15528 508 aa23.98■■□□□ 1.43
ECHDC1-216ENST00000479525 EYA1Q99502 592 aa23.97■■□□□ 1.43
ECHDC1-216ENST00000479525 PCDH11XQ9BZA7 1347 aa23.97■■□□□ 1.43
ECHDC1-216ENST00000479525 PCDH11YQ9BZA8 1340 aa23.97■■□□□ 1.43
ECHDC1-216ENST00000479525 C5P01031 1676 aa23.96■■□□□ 1.43
ECHDC1-216ENST00000479525 TAF1LQ8IZX4 1826 aa23.96■■□□□ 1.43
ECHDC1-216ENST00000479525 AKT1S1Q96B36 256 aa23.96■■□□□ 1.43
ECHDC1-216ENST00000479525 WASHC2AQ641Q2 1341 aa23.95■■□□□ 1.42
ECHDC1-216ENST00000479525 EIF4A2Q14240 407 aaKnown RBP23.94■■□□□ 1.42
ECHDC1-216ENST00000479525 MPRIPQ6WCQ1 1025 aa23.94■■□□□ 1.42
ECHDC1-216ENST00000479525 MTFR1LQ9H019 292 aa23.94■■□□□ 1.42
ECHDC1-216ENST00000479525 CCNL1Q9UK58 526 aaPredicted RBP23.94■■□□□ 1.42
ECHDC1-216ENST00000479525 NCAPD2Q15021 1401 aa23.94■■□□□ 1.42
ECHDC1-216ENST00000479525 SLC27A3Q5K4L6 730 aa23.92■■□□□ 1.42
ECHDC1-216ENST00000479525 FHDC1Q9C0D6 1143 aaPredicted RBP23.92■■□□□ 1.42
ECHDC1-216ENST00000479525 PNPLA7Q6ZV29 1317 aa23.92■■□□□ 1.42
ECHDC1-216ENST00000479525 SGIP1Q9BQI5 828 aa23.91■■□□□ 1.42
ECHDC1-216ENST00000479525 TFCP2L1Q9NZI6 479 aa23.91■■□□□ 1.42
ECHDC1-216ENST00000479525 KLHL34Q8N239 644 aa23.9■■□□□ 1.42
ECHDC1-216ENST00000479525 PALLDQ8WX93 1383 aa23.88■■□□□ 1.41
ECHDC1-216ENST00000479525 KIF7Q2M1P5 1343 aa23.87■■□□□ 1.41
ECHDC1-216ENST00000479525 MSH5O43196 834 aa23.87■■□□□ 1.41
ECHDC1-216ENST00000479525 CNGB1Q14028 1251 aaPredicted RBP23.87■■□□□ 1.41
ECHDC1-216ENST00000479525 SMIM5Q71RC9 77 aa23.87■■□□□ 1.41
ECHDC1-216ENST00000479525 MORC1Q86VD1 984 aa23.87■■□□□ 1.41
ECHDC1-216ENST00000479525 ARXQ96QS3 562 aa23.86■■□□□ 1.41
ECHDC1-216ENST00000479525 SYT17Q9BSW7 474 aa23.86■■□□□ 1.41
ECHDC1-216ENST00000479525 COL24A1Q17RW2 1714 aa23.86■■□□□ 1.41
ECHDC1-216ENST00000479525 PIGBQ92521 554 aa23.85■■□□□ 1.41
ECHDC1-216ENST00000479525 SPG7Q9UQ90 795 aa23.85■■□□□ 1.41
ECHDC1-216ENST00000479525 C4BP0C0L5 1744 aa23.84■■□□□ 1.41
ECHDC1-216ENST00000479525 MSL1Q68DK7 614 aa23.84■■□□□ 1.41
ECHDC1-216ENST00000479525 YY1P25490 414 aa23.83■■□□□ 1.41
ECHDC1-216ENST00000479525 COL23A1Q86Y22 540 aaPredicted RBP23.82■■□□□ 1.4
ECHDC1-216ENST00000479525 AEBP1Q8IUX7 1158 aa23.82■■□□□ 1.4
ECHDC1-216ENST00000479525 KNSTRNQ9Y448 316 aa23.82■■□□□ 1.4
ECHDC1-216ENST00000479525 UTRNP46939 3433 aa23.82■■□□□ 1.4
ECHDC1-216ENST00000479525 UBR3Q6ZT12 1888 aa23.82■■□□□ 1.4
ECHDC1-216ENST00000479525 PHKG2P15735 406 aa23.81■■□□□ 1.4
ECHDC1-216ENST00000479525 AMIGO3Q86WK7 504 aa23.81■■□□□ 1.4
ECHDC1-216ENST00000479525 IGSF1Q8N6C5 1336 aa23.81■■□□□ 1.4
ECHDC1-216ENST00000479525 DCAF8L1A6NGE4 600 aa23.79■■□□□ 1.4
ECHDC1-216ENST00000479525 NKX1-1Q15270 411 aaPredicted RBP23.78■■□□□ 1.4
ECHDC1-216ENST00000479525 IFNL2Q8IZJ0 200 aa23.78■■□□□ 1.4
ECHDC1-216ENST00000479525 ASAP1Q9ULH1 1129 aa23.78■■□□□ 1.4
ECHDC1-216ENST00000479525 TMOD3Q9NYL9 352 aa23.78■■□□□ 1.4
ECHDC1-216ENST00000479525 VIRMAQ69YN4 1812 aaKnown RBP23.78■■□□□ 1.4
ECHDC1-216ENST00000479525 PHF14O94880 888 aa23.77■■□□□ 1.4
ECHDC1-216ENST00000479525 AMER1Q5JTC6 1135 aaPredicted RBP23.77■■□□□ 1.4
ECHDC1-216ENST00000479525 CC2D1BQ5T0F9 858 aaKnown RBP23.76■■□□□ 1.39
ECHDC1-216ENST00000479525 SLC16A10Q8TF71 515 aa23.76■■□□□ 1.39
ECHDC1-216ENST00000479525 POLD1P28340 1107 aa23.75■■□□□ 1.39
ECHDC1-216ENST00000479525 LINC00116Q8NCU8 138 aa23.75■■□□□ 1.39
ECHDC1-216ENST00000479525 NLGN2Q8NFZ4 835 aa23.75■■□□□ 1.39
ECHDC1-216ENST00000479525 CHD4Q14839 1912 aa23.74■■□□□ 1.39
ECHDC1-216ENST00000479525 ZNF530Q6P9A1 599 aaPredicted RBP23.74■■□□□ 1.39
ECHDC1-216ENST00000479525 PELP1Q8IZL8 1130 aaKnown RBP23.74■■□□□ 1.39
ECHDC1-216ENST00000479525 SULT6B1Q6IMI4 303 aa23.73■■□□□ 1.39
ECHDC1-216ENST00000479525 SMARCC1Q92922 1105 aaPredicted RBP23.73■■□□□ 1.39
ECHDC1-216ENST00000479525 AK7Q96M32 723 aa23.73■■□□□ 1.39
ECHDC1-216ENST00000479525 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.73■■□□□ 1.393e-7■■□□□ 13.1
ECHDC1-216ENST00000479525 KDM6AO15550 1401 aaPredicted RBP23.73■■□□□ 1.39
ECHDC1-216ENST00000479525 LOC102724428A0A0B4J2F2 783 aa23.72■■□□□ 1.39
ECHDC1-216ENST00000479525 SIK1P57059 783 aa23.72■■□□□ 1.39
ECHDC1-216ENST00000479525 ITPK1Q13572 414 aa23.72■■□□□ 1.39
ECHDC1-216ENST00000479525 GOLGB1Q14789 3259 aaKnown RBP23.71■■□□□ 1.39
ECHDC1-216ENST00000479525 ATG3Q9NT62 314 aa23.71■■□□□ 1.39
ECHDC1-216ENST00000479525 SCN11AQ9UI33 1791 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms