RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 BCL11BQ9C0K0 894 aaPredicted RBP20.93■□□□□ 0.94
C9orf3-217ENST00000479161 PARD3Q8TEW0 1356 aa20.93■□□□□ 0.94
C9orf3-217ENST00000479161 TRIM37O94972 964 aa20.92■□□□□ 0.94
C9orf3-217ENST00000479161 KDRP35968 1356 aa20.92■□□□□ 0.94
C9orf3-217ENST00000479161 RGPD3A6NKT7 1758 aaPredicted RBP20.92■□□□□ 0.94
C9orf3-217ENST00000479161 RGPD4Q7Z3J3 1758 aa20.92■□□□□ 0.94
C9orf3-217ENST00000479161 USHBP1Q8N6Y0 703 aa20.91■□□□□ 0.94
C9orf3-217ENST00000479161 KAT6BQ8WYB5 2073 aa20.9■□□□□ 0.94
C9orf3-217ENST00000479161 PCDH11XQ9BZA7 1347 aa20.89■□□□□ 0.93
C9orf3-217ENST00000479161 PCDH11YQ9BZA8 1340 aa20.89■□□□□ 0.93
C9orf3-217ENST00000479161 PLSCR1O15162 318 aa20.89■□□□□ 0.93
C9orf3-217ENST00000479161 NHSQ6T4R5 1651 aa20.89■□□□□ 0.93
C9orf3-217ENST00000479161 DIAPH1O60610 1272 aaKnown RBP20.88■□□□□ 0.93
C9orf3-217ENST00000479161 DDX10Q13206 875 aaKnown RBP20.88■□□□□ 0.93
C9orf3-217ENST00000479161 SPG7Q9UQ90 795 aa20.88■□□□□ 0.93
C9orf3-217ENST00000479161 COL3A1P02461 1466 aaPredicted RBP20.88■□□□□ 0.93
C9orf3-217ENST00000479161 PPP2R1AP30153 589 aa20.87■□□□□ 0.93
C9orf3-217ENST00000479161 APBA3O96018 575 aa20.86■□□□□ 0.93
C9orf3-217ENST00000479161 NKX1-1Q15270 411 aaPredicted RBP20.86■□□□□ 0.93
C9orf3-217ENST00000479161 RALBP1Q15311 655 aa20.86■□□□□ 0.93
C9orf3-217ENST00000479161 DEFB132Q7Z7B7 95 aa20.86■□□□□ 0.93
C9orf3-217ENST00000479161 DDX54Q8TDD1 881 aaKnown RBP20.86■□□□□ 0.93
C9orf3-217ENST00000479161 CAMKK2Q96RR4 588 aa20.86■□□□□ 0.93
C9orf3-217ENST00000479161 AMOTQ4VCS5 1084 aa20.85■□□□□ 0.93
C9orf3-217ENST00000479161 CFAP53Q96M91 514 aa20.85■□□□□ 0.93
C9orf3-217ENST00000479161 ZNF316A6NFI3 1004 aaPredicted RBP20.83■□□□□ 0.93
C9orf3-217ENST00000479161 CYP27B1O15528 508 aa20.83■□□□□ 0.93
C9orf3-217ENST00000479161 EN1Q05925 392 aaPredicted RBP20.82■□□□□ 0.92
C9orf3-217ENST00000479161 PLEKHO1Q53GL0 409 aaPredicted RBP20.82■□□□□ 0.92
C9orf3-217ENST00000479161 SULT6B1Q6IMI4 303 aa20.82■□□□□ 0.92
C9orf3-217ENST00000479161 RREB1Q92766 1687 aa20.81■□□□□ 0.92
C9orf3-217ENST00000479161 IFNL2Q8IZJ0 200 aa20.81■□□□□ 0.92
C9orf3-217ENST00000479161 BTAF1O14981 1849 aa20.8■□□□□ 0.92
C9orf3-217ENST00000479161 DOT1LQ8TEK3 1739 aa20.79■□□□□ 0.92
C9orf3-217ENST00000479161 KCNQ2O43526 872 aa20.79■□□□□ 0.92
C9orf3-217ENST00000479161 NUDCQ9Y266 331 aa20.79■□□□□ 0.92
C9orf3-217ENST00000479161 HSP90AB1P08238 724 aaKnown RBP20.78■□□□□ 0.92
C9orf3-217ENST00000479161 PHKG2P15735 406 aa20.78■□□□□ 0.92
C9orf3-217ENST00000479161 AEBP1Q8IUX7 1158 aa20.78■□□□□ 0.92
C9orf3-217ENST00000479161 CNGB1Q14028 1251 aaPredicted RBP20.77■□□□□ 0.92
C9orf3-217ENST00000479161 EZH2Q15910 746 aaKnown RBP20.77■□□□□ 0.92
C9orf3-217ENST00000479161 PTF1AQ7RTS3 328 aa20.77■□□□□ 0.92
C9orf3-217ENST00000479161 PRIM1P49642 420 aaKnown RBP20.76■□□□□ 0.91
C9orf3-217ENST00000479161 ACSBG1Q96GR2 724 aa20.76■□□□□ 0.91
C9orf3-217ENST00000479161 ITGB4P16144 1822 aa20.76■□□□□ 0.91
C9orf3-217ENST00000479161 HMGB2P26583 209 aaKnown RBP20.75■□□□□ 0.91
C9orf3-217ENST00000479161 NUP188Q5SRE5 1749 aa20.74■□□□□ 0.91
C9orf3-217ENST00000479161 DCAF5Q96JK2 942 aa20.74■□□□□ 0.91
C9orf3-217ENST00000479161 ERVV-2B6SEH9 535 aa20.73■□□□□ 0.91
C9orf3-217ENST00000479161 MYBBP1AQ9BQG0 1328 aaKnown RBP20.73■□□□□ 0.91
C9orf3-217ENST00000479161 TOGARAM1Q9Y4F4 1720 aa20.73■□□□□ 0.91
C9orf3-217ENST00000479161 FCHSD2O94868 740 aa20.72■□□□□ 0.91
C9orf3-217ENST00000479161 PROM2Q8N271 834 aa20.72■□□□□ 0.91
C9orf3-217ENST00000479161 PRKRIP1Q9H875 184 aaPredicted RBP20.72■□□□□ 0.91
C9orf3-217ENST00000479161 LY75O60449 1722 aa20.72■□□□□ 0.91
C9orf3-217ENST00000479161 U2SURPO15042 1029 aaKnown RBP20.71■□□□□ 0.91
C9orf3-217ENST00000479161 HMOX1P09601 288 aa20.71■□□□□ 0.91
C9orf3-217ENST00000479161 TXNRD1Q16881 649 aa20.71■□□□□ 0.91
C9orf3-217ENST00000479161 AKAP4Q5JQC9 854 aa20.71■□□□□ 0.91
C9orf3-217ENST00000479161 SLC27A3Q5K4L6 730 aa20.71■□□□□ 0.91
C9orf3-217ENST00000479161 ZNF530Q6P9A1 599 aaPredicted RBP20.71■□□□□ 0.91
C9orf3-217ENST00000479161 C1orf141Q5JVX7 400 aa20.7■□□□□ 0.9
C9orf3-217ENST00000479161 NBPF14Q5TI25 921 aa20.69■□□□□ 0.9
C9orf3-217ENST00000479161 RSPH6AQ9H0K4 717 aa20.69■□□□□ 0.9
C9orf3-217ENST00000479161 SCN11AQ9UI33 1791 aa20.69■□□□□ 0.9
C9orf3-217ENST00000479161 SMARCC1Q92922 1105 aaPredicted RBP20.68■□□□□ 0.9
C9orf3-217ENST00000479161 SYTL4Q96C24 671 aaPredicted RBP20.68■□□□□ 0.9
C9orf3-217ENST00000479161 ADAMTS7Q9UKP4 1686 aa20.67■□□□□ 0.9
C9orf3-217ENST00000479161 GAS2L2Q8NHY3 880 aa20.67■□□□□ 0.9
C9orf3-217ENST00000479161 U2AF1L5P0DN76 240 aaPredicted RBP20.66■□□□□ 0.9
C9orf3-217ENST00000479161 U2AF1Q01081 240 aaKnown RBP eCLIP20.66■□□□□ 0.9
C9orf3-217ENST00000479161 PIGBQ92521 554 aa20.66■□□□□ 0.9
C9orf3-217ENST00000479161 PNNQ9H307 717 aaKnown RBP20.66■□□□□ 0.9
C9orf3-217ENST00000479161 KDM6AO15550 1401 aaPredicted RBP20.65■□□□□ 0.9
C9orf3-217ENST00000479161 MTHFSDQ2M296 383 aaKnown RBP20.65■□□□□ 0.9
C9orf3-217ENST00000479161 MPRIPQ6WCQ1 1025 aa20.65■□□□□ 0.9
C9orf3-217ENST00000479161 TMOD3Q9NYL9 352 aa20.65■□□□□ 0.9
C9orf3-217ENST00000479161 VIRMAQ69YN4 1812 aaKnown RBP20.64■□□□□ 0.9
C9orf3-217ENST00000479161 PAPPAQ13219 1627 aa20.64■□□□□ 0.89
C9orf3-217ENST00000479161 PRKAR2BP31323 418 aa20.63■□□□□ 0.89
C9orf3-217ENST00000479161 LRP5O75197 1615 aa20.63■□□□□ 0.89
C9orf3-217ENST00000479161 ZNF831Q5JPB2 1677 aa20.62■□□□□ 0.89
C9orf3-217ENST00000479161 LRRC4BQ9NT99 713 aa20.61■□□□□ 0.89
C9orf3-217ENST00000479161 MRC1P22897 1456 aa20.61■□□□□ 0.89
C9orf3-217ENST00000479161 PALLDQ8WX93 1383 aa20.6■□□□□ 0.89
C9orf3-217ENST00000479161 CABP4P57796 275 aa20.6■□□□□ 0.89
C9orf3-217ENST00000479161 GNAT3A8MTJ3 354 aa20.59■□□□□ 0.89
C9orf3-217ENST00000479161 RNMTO43148 476 aaKnown RBP20.59■□□□□ 0.89
C9orf3-217ENST00000479161 HTATSF1O43719 755 aaKnown RBP20.59■□□□□ 0.89
C9orf3-217ENST00000479161 PHACTR3Q96KR7 559 aa20.59■□□□□ 0.89
C9orf3-217ENST00000479161 MAP3K5Q99683 1374 aa20.59■□□□□ 0.89
C9orf3-217ENST00000479161 QSER1Q2KHR3 1735 aa20.58■□□□□ 0.89
C9orf3-217ENST00000479161 TAF1LQ8IZX4 1826 aa20.58■□□□□ 0.89
C9orf3-217ENST00000479161 NEFMP07197 916 aa20.58■□□□□ 0.89
C9orf3-217ENST00000479161 SLC15A2Q16348 729 aa20.58■□□□□ 0.89
C9orf3-217ENST00000479161 PLEKHF1Q96S99 279 aa20.58■□□□□ 0.89
C9orf3-217ENST00000479161 SLC52A2Q9HAB3 445 aa20.58■□□□□ 0.89
C9orf3-217ENST00000479161 R3HDM1Q15032 1099 aaKnown RBP20.57■□□□□ 0.88
C9orf3-217ENST00000479161 ATG3Q9NT62 314 aa20.57■□□□□ 0.88
C9orf3-217ENST00000479161 STK32BQ9NY57 414 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 184.3 ms