RNA–Protein interactions for RNA: ENST00000477299.5

COPS3-207, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 656 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-207ENST00000477299 EXOC5O00471 708 aa21.28■■□□□ 1
COPS3-207ENST00000477299 TATP17735 454 aaPredicted RBP21.28■■□□□ 1
COPS3-207ENST00000477299 KRT27Q7Z3Y8 459 aa21.28■■□□□ 1
COPS3-207ENST00000477299 OVOS2A0A0G2JMS6 1433 aa21.28■■□□□ 1
COPS3-207ENST00000477299 PKD1L3Q7Z443 1732 aa21.27■■□□□ 1
COPS3-207ENST00000477299 U2AF1L5P0DN76 240 aaPredicted RBP21.27■■□□□ 1
COPS3-207ENST00000477299 U2AF1Q01081 240 aaKnown RBP eCLIP21.27■■□□□ 1
COPS3-207ENST00000477299 CDCA7Q9BWT1 371 aaPredicted RBP21.27■■□□□ 1
COPS3-207ENST00000477299 ZCRB1Q8TBF4 217 aaKnown RBP21.26■□□□□ 0.99
COPS3-207ENST00000477299 DDX54Q8TDD1 881 aaKnown RBP21.26■□□□□ 0.99
COPS3-207ENST00000477299 PDE3BQ13370 1112 aa21.25■□□□□ 0.99
COPS3-207ENST00000477299 MIER1Q8N108 512 aa21.25■□□□□ 0.99
COPS3-207ENST00000477299 NUDCQ9Y266 331 aa21.25■□□□□ 0.99
COPS3-207ENST00000477299 TNS2Q63HR2 1409 aa21.24■□□□□ 0.99
COPS3-207ENST00000477299 PHACTR3Q96KR7 559 aa21.24■□□□□ 0.99
COPS3-207ENST00000477299 RSPH6AQ9H0K4 717 aa21.24■□□□□ 0.99
COPS3-207ENST00000477299 SBF2Q86WG5 1849 aa21.23■□□□□ 0.99
COPS3-207ENST00000477299 CYP27B1O15528 508 aa21.23■□□□□ 0.99
COPS3-207ENST00000477299 PRKAR2BP31323 418 aa21.22■□□□□ 0.99
COPS3-207ENST00000477299 MRS2Q9HD23 443 aa21.22■□□□□ 0.99
COPS3-207ENST00000477299 ADAMTS8Q9UP79 889 aa21.21■□□□□ 0.99
COPS3-207ENST00000477299 VIRMAQ69YN4 1812 aaKnown RBP21.2■□□□□ 0.98
COPS3-207ENST00000477299 PTF1AQ7RTS3 328 aa21.2■□□□□ 0.98
COPS3-207ENST00000477299 MTHFSDQ2M296 383 aaKnown RBP21.19■□□□□ 0.98
COPS3-207ENST00000477299 DLG5Q8TDM6 1919 aa21.18■□□□□ 0.98
COPS3-207ENST00000477299 FCHSD2O94868 740 aa21.18■□□□□ 0.98
COPS3-207ENST00000477299 PLEKHO1Q53GL0 409 aaPredicted RBP21.18■□□□□ 0.98
COPS3-207ENST00000477299 PNISRQ8TF01 805 aaKnown RBP21.18■□□□□ 0.98
COPS3-207ENST00000477299 CCDC146Q8IYE0 955 aa21.17■□□□□ 0.98
COPS3-207ENST00000477299 PLEKHF1Q96S99 279 aa21.17■□□□□ 0.98
COPS3-207ENST00000477299 SPG7Q9UQ90 795 aa21.17■□□□□ 0.98
COPS3-207ENST00000477299 TOGARAM1Q9Y4F4 1720 aa21.17■□□□□ 0.98
COPS3-207ENST00000477299 ZNF530Q6P9A1 599 aaPredicted RBP21.16■□□□□ 0.98
COPS3-207ENST00000477299 ACSBG1Q96GR2 724 aa21.16■□□□□ 0.98
COPS3-207ENST00000477299 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.16■□□□□ 0.98
COPS3-207ENST00000477299 SENP3-EIF4A1A0A087X0R7 540 aa21.15■□□□□ 0.98
COPS3-207ENST00000477299 PHKG2P15735 406 aa21.15■□□□□ 0.98
COPS3-207ENST00000477299 WDR43Q15061 677 aaKnown RBP eCLIP21.15■□□□□ 0.98
COPS3-207ENST00000477299 ITGB4P16144 1822 aa21.15■□□□□ 0.98
COPS3-207ENST00000477299 EP400Q96L91 3159 aa21.15■□□□□ 0.98
COPS3-207ENST00000477299 DOT1LQ8TEK3 1739 aa21.15■□□□□ 0.98
COPS3-207ENST00000477299 PCDH11XQ9BZA7 1347 aa21.14■□□□□ 0.97
COPS3-207ENST00000477299 PCDH11YQ9BZA8 1340 aa21.14■□□□□ 0.97
COPS3-207ENST00000477299 KCNQ2O43526 872 aa21.14■□□□□ 0.97
COPS3-207ENST00000477299 FAM196AQ6ZSG2 479 aa21.13■□□□□ 0.97
COPS3-207ENST00000477299 TRIM37O94972 964 aa21.12■□□□□ 0.97
COPS3-207ENST00000477299 AMOTQ4VCS5 1084 aa21.12■□□□□ 0.97
COPS3-207ENST00000477299 IFNL2Q8IZJ0 200 aa21.12■□□□□ 0.97
COPS3-207ENST00000477299 SCN11AQ9UI33 1791 aa21.11■□□□□ 0.97
COPS3-207ENST00000477299 MPRIPQ6WCQ1 1025 aa21.11■□□□□ 0.97
COPS3-207ENST00000477299 FAM9BQ8IZU0 186 aa21.11■□□□□ 0.97
COPS3-207ENST00000477299 NKX1-1Q15270 411 aaPredicted RBP21.1■□□□□ 0.97
COPS3-207ENST00000477299 LGR6Q9HBX8 967 aa21.1■□□□□ 0.97
COPS3-207ENST00000477299 TNS1Q9HBL0 1735 aaKnown RBP21.09■□□□□ 0.97
COPS3-207ENST00000477299 UPF1Q92900 1129 aaKnown RBP eCLIP21.09■□□□□ 0.97
COPS3-207ENST00000477299 KDM6AO15550 1401 aaPredicted RBP21.09■□□□□ 0.97
COPS3-207ENST00000477299 CCER2I3L3R5 266 aa21.08■□□□□ 0.97
COPS3-207ENST00000477299 PRIM1P49642 420 aaKnown RBP21.08■□□□□ 0.97
COPS3-207ENST00000477299 RRP7AQ9Y3A4 280 aaKnown RBP21.08■□□□□ 0.97
COPS3-207ENST00000477299 BTAF1O14981 1849 aa21.08■□□□□ 0.96
COPS3-207ENST00000477299 NHSQ6T4R5 1651 aa21.08■□□□□ 0.96
COPS3-207ENST00000477299 BCL9O00512 1426 aa21.07■□□□□ 0.96
COPS3-207ENST00000477299 AKAP4Q5JQC9 854 aa21.07■□□□□ 0.96
COPS3-207ENST00000477299 C1orf141Q5JVX7 400 aa21.07■□□□□ 0.96
COPS3-207ENST00000477299 PLEKHG2Q9H7P9 1386 aa21.07■□□□□ 0.96
COPS3-207ENST00000477299 RUNDC1Q96C34 613 aa21.06■□□□□ 0.96
COPS3-207ENST00000477299 DCTN1Q14203 1278 aa21.05■□□□□ 0.96
COPS3-207ENST00000477299 IL17REQ8NFR9 667 aa21.05■□□□□ 0.96
COPS3-207ENST00000477299 GAS2L2Q8NHY3 880 aa21.05■□□□□ 0.96
COPS3-207ENST00000477299 SYTL4Q96C24 671 aaPredicted RBP21.05■□□□□ 0.96
COPS3-207ENST00000477299 RNMTO43148 476 aaKnown RBP21.04■□□□□ 0.96
COPS3-207ENST00000477299 NEUROD2Q15784 382 aa21.04■□□□□ 0.96
COPS3-207ENST00000477299 NFE2L2Q16236 605 aa21.04■□□□□ 0.96
COPS3-207ENST00000477299 ADAMTS7Q9UKP4 1686 aa21.04■□□□□ 0.96
COPS3-207ENST00000477299 GNAT3A8MTJ3 354 aa21.03■□□□□ 0.96
COPS3-207ENST00000477299 TMPOP42166 694 aaKnown RBP21.03■□□□□ 0.96
COPS3-207ENST00000477299 DCAF5Q96JK2 942 aa21.03■□□□□ 0.96
COPS3-207ENST00000477299 MAPK8IP3Q9UPT6 1336 aa21.03■□□□□ 0.96
COPS3-207ENST00000477299 MAP3K5Q99683 1374 aa21.02■□□□□ 0.96
COPS3-207ENST00000477299 APAF1O14727 1248 aa21.02■□□□□ 0.96
COPS3-207ENST00000477299 MCM10Q7L590 875 aa21.02■□□□□ 0.96
COPS3-207ENST00000477299 DEFB132Q7Z7B7 95 aa21.02■□□□□ 0.96
COPS3-207ENST00000477299 BCL11BQ9C0K0 894 aaPredicted RBP21.02■□□□□ 0.96
COPS3-207ENST00000477299 PNNQ9H307 717 aaKnown RBP21.02■□□□□ 0.96
COPS3-207ENST00000477299 PIGBQ92521 554 aa21.01■□□□□ 0.95
COPS3-207ENST00000477299 THUMPD2Q9BTF0 503 aaKnown RBP21.01■□□□□ 0.95
COPS3-207ENST00000477299 SIPA1L3O60292 1781 aaPredicted RBP21■□□□□ 0.95
COPS3-207ENST00000477299 APBA3O96018 575 aa21■□□□□ 0.95
COPS3-207ENST00000477299 NEFMP07197 916 aa21■□□□□ 0.95
COPS3-207ENST00000477299 RIPK4P57078 832 aa21■□□□□ 0.95
COPS3-207ENST00000477299 NFATC2IPQ8NCF5 419 aa21■□□□□ 0.95
COPS3-207ENST00000477299 HSP90AB1P08238 724 aaKnown RBP20.99■□□□□ 0.95
COPS3-207ENST00000477299 EN1Q05925 392 aaPredicted RBP20.98■□□□□ 0.95
COPS3-207ENST00000477299 TRIM35Q9UPQ4 493 aa20.98■□□□□ 0.95
COPS3-207ENST00000477299 ERVV-2B6SEH9 535 aa20.97■□□□□ 0.95
COPS3-207ENST00000477299 CABP4P57796 275 aa20.97■□□□□ 0.95
COPS3-207ENST00000477299 TMOD3Q9NYL9 352 aa20.96■□□□□ 0.95
COPS3-207ENST00000477299 ASAP1Q9ULH1 1129 aa20.96■□□□□ 0.95
COPS3-207ENST00000477299 SALL2Q9Y467 1007 aaPredicted RBP20.96■□□□□ 0.95
COPS3-207ENST00000477299 EZH2Q15910 746 aaKnown RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms