RNA–Protein interactions for RNA: ENST00000477052.1

VARS2-208, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 552 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-208ENST00000477052 POLR3GLQ9BT43 218 aa16.27■□□□□ 0.2
VARS2-208ENST00000477052 DOT1LQ8TEK3 1739 aa16.27■□□□□ 0.19
VARS2-208ENST00000477052 SHANK3Q9BYB0 1731 aa16.27■□□□□ 0.19
VARS2-208ENST00000477052 FHDC1Q9C0D6 1143 aaPredicted RBP16.26■□□□□ 0.19
VARS2-208ENST00000477052 MTFR1LQ9H019 292 aa16.26■□□□□ 0.19
VARS2-208ENST00000477052 EMILIN1Q9Y6C2 1016 aa16.26■□□□□ 0.19
VARS2-208ENST00000477052 NSD3Q9BZ95 1437 aa16.26■□□□□ 0.19
VARS2-208ENST00000477052 KIF20BQ96Q89 1820 aa16.26■□□□□ 0.19
VARS2-208ENST00000477052 SGIP1Q9BQI5 828 aa16.25■□□□□ 0.19
VARS2-208ENST00000477052 RTL1A6NKG5 1358 aa16.25■□□□□ 0.19
VARS2-208ENST00000477052 NSD2O96028 1365 aa16.25■□□□□ 0.19
VARS2-208ENST00000477052 PPM1GO15355 546 aaPredicted RBP16.24■□□□□ 0.19
VARS2-208ENST00000477052 AKT1S1Q96B36 256 aa16.24■□□□□ 0.19
VARS2-208ENST00000477052 CDCA8Q53HL2 280 aa16.23■□□□□ 0.19
VARS2-208ENST00000477052 RAPGEF4Q8WZA2 1011 aa16.23■□□□□ 0.19
VARS2-208ENST00000477052 SYT17Q9BSW7 474 aa16.23■□□□□ 0.19
VARS2-208ENST00000477052 DCAF8L1A6NGE4 600 aa16.22■□□□□ 0.19
VARS2-208ENST00000477052 INSRP06213 1382 aa16.22■□□□□ 0.19
VARS2-208ENST00000477052 SMG6Q86US8 1419 aaKnown RBP16.21■□□□□ 0.19
VARS2-208ENST00000477052 TATP17735 454 aaPredicted RBP16.21■□□□□ 0.19
VARS2-208ENST00000477052 SLC27A3Q5K4L6 730 aa16.21■□□□□ 0.19
VARS2-208ENST00000477052 ARXQ96QS3 562 aa16.21■□□□□ 0.19
VARS2-208ENST00000477052 FLT4P35916 1363 aa16.21■□□□□ 0.19
VARS2-208ENST00000477052 PNPLA7Q6ZV29 1317 aa16.2■□□□□ 0.18
VARS2-208ENST00000477052 KLHL34Q8N239 644 aa16.2■□□□□ 0.18
VARS2-208ENST00000477052 TFCP2L1Q9NZI6 479 aa16.2■□□□□ 0.18
VARS2-208ENST00000477052 CCNL1Q9UK58 526 aaPredicted RBP16.2■□□□□ 0.18
VARS2-208ENST00000477052 TUBGCP6Q96RT7 1819 aa16.19■□□□□ 0.18
VARS2-208ENST00000477052 TNNT2P45379 298 aaPredicted RBP16.19■□□□□ 0.18
VARS2-208ENST00000477052 CYP27B1O15528 508 aa16.18■□□□□ 0.18
VARS2-208ENST00000477052 LY75O60449 1722 aa16.17■□□□□ 0.18
VARS2-208ENST00000477052 MSH5O43196 834 aa16.17■□□□□ 0.18
VARS2-208ENST00000477052 MPRIPQ6WCQ1 1025 aa16.17■□□□□ 0.18
VARS2-208ENST00000477052 TIMELESSQ9UNS1 1208 aa16.16■□□□□ 0.18
VARS2-208ENST00000477052 CGNL1Q0VF96 1302 aa16.16■□□□□ 0.18
VARS2-208ENST00000477052 HSPA5P11021 654 aaKnown RBP16.15■□□□□ 0.18
VARS2-208ENST00000477052 MSL1Q68DK7 614 aa16.15■□□□□ 0.18
VARS2-208ENST00000477052 SMIM5Q71RC9 77 aa16.15■□□□□ 0.18
VARS2-208ENST00000477052 PCDH11XQ9BZA7 1347 aa16.15■□□□□ 0.18
VARS2-208ENST00000477052 PCDH11YQ9BZA8 1340 aa16.15■□□□□ 0.18
VARS2-208ENST00000477052 COL23A1Q86Y22 540 aaPredicted RBP16.14■□□□□ 0.17
VARS2-208ENST00000477052 EYA1Q99502 592 aa16.14■□□□□ 0.17
VARS2-208ENST00000477052 POLKQ9UBT6 870 aa16.14■□□□□ 0.17
VARS2-208ENST00000477052 UTRNP46939 3433 aa16.14■□□□□ 0.17
VARS2-208ENST00000477052 TOGARAM1Q9Y4F4 1720 aa16.14■□□□□ 0.17
VARS2-208ENST00000477052 MAP2P11137 1827 aaKnown RBP16.13■□□□□ 0.17
VARS2-208ENST00000477052 KIF24Q5T7B8 1368 aa16.13■□□□□ 0.17
VARS2-208ENST00000477052 QSER1Q2KHR3 1735 aa16.12■□□□□ 0.17
VARS2-208ENST00000477052 PELP1Q8IZL8 1130 aaKnown RBP16.12■□□□□ 0.17
VARS2-208ENST00000477052 NLGN2Q8NFZ4 835 aa16.12■□□□□ 0.17
VARS2-208ENST00000477052 CCER1Q8TC90 406 aaPredicted RBP16.12■□□□□ 0.17
VARS2-208ENST00000477052 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
VARS2-208ENST00000477052 PALLDQ8WX93 1383 aa16.12■□□□□ 0.17
VARS2-208ENST00000477052 POLD1P28340 1107 aa16.11■□□□□ 0.17
VARS2-208ENST00000477052 SLC16A10Q8TF71 515 aa16.11■□□□□ 0.17
VARS2-208ENST00000477052 PIGBQ92521 554 aa16.11■□□□□ 0.17
VARS2-208ENST00000477052 CLSPNQ9HAW4 1339 aa16.11■□□□□ 0.17
VARS2-208ENST00000477052 EIF4G2P78344 907 aaKnown RBP eCLIP16.1■□□□□ 0.17
VARS2-208ENST00000477052 EIF4A2Q14240 407 aaKnown RBP16.1■□□□□ 0.17
VARS2-208ENST00000477052 GPR162Q16538 588 aa16.1■□□□□ 0.17
VARS2-208ENST00000477052 AMIGO3Q86WK7 504 aa16.1■□□□□ 0.17
VARS2-208ENST00000477052 PANK3Q9H999 370 aa16.1■□□□□ 0.17
VARS2-208ENST00000477052 PKD1L3Q7Z443 1732 aa16.1■□□□□ 0.17
VARS2-208ENST00000477052 ANKRD26Q9UPS8 1709 aa16.1■□□□□ 0.17
VARS2-208ENST00000477052 ITGB4P16144 1822 aa16.1■□□□□ 0.17
VARS2-208ENST00000477052 C5P01031 1676 aa16.09■□□□□ 0.17
VARS2-208ENST00000477052 NCAPD2Q15021 1401 aa16.09■□□□□ 0.17
VARS2-208ENST00000477052 ZNF784Q8NCA9 323 aaPredicted RBP16.08■□□□□ 0.16
VARS2-208ENST00000477052 SPG7Q9UQ90 795 aa16.08■□□□□ 0.16
VARS2-208ENST00000477052 MAP3K5Q99683 1374 aa16.08■□□□□ 0.16
VARS2-208ENST00000477052 PHF14O94880 888 aa16.07■□□□□ 0.16
VARS2-208ENST00000477052 COL24A1Q17RW2 1714 aa16.07■□□□□ 0.16
VARS2-208ENST00000477052 TAF1LQ8IZX4 1826 aa16.06■□□□□ 0.16
VARS2-208ENST00000477052 NKX1-1Q15270 411 aaPredicted RBP16.06■□□□□ 0.16
VARS2-208ENST00000477052 ASAP1Q9ULH1 1129 aa16.06■□□□□ 0.16
VARS2-208ENST00000477052 PHKG2P15735 406 aa16.05■□□□□ 0.16
VARS2-208ENST00000477052 LINC00116Q8NCU8 138 aa16.04■□□□□ 0.16
VARS2-208ENST00000477052 SMARCC1Q92922 1105 aaPredicted RBP16.04■□□□□ 0.16
VARS2-208ENST00000477052 AK7Q96M32 723 aa16.04■□□□□ 0.16
VARS2-208ENST00000477052 TMOD3Q9NYL9 352 aa16.04■□□□□ 0.16
VARS2-208ENST00000477052 C4BP0C0L5 1744 aa16.03■□□□□ 0.16
VARS2-208ENST00000477052 YBX3P16989 372 aaKnown RBP eCLIP16.03■□□□□ 0.16
VARS2-208ENST00000477052 ITPK1Q13572 414 aa16.03■□□□□ 0.16
VARS2-208ENST00000477052 IFNL2Q8IZJ0 200 aa16.03■□□□□ 0.16
VARS2-208ENST00000477052 GOLGB1Q14789 3259 aaKnown RBP16.02■□□□□ 0.16
VARS2-208ENST00000477052 LOC102724428A0A0B4J2F2 783 aa16.02■□□□□ 0.16
VARS2-208ENST00000477052 SIK1P57059 783 aa16.02■□□□□ 0.16
VARS2-208ENST00000477052 MORC1Q86VD1 984 aa16.02■□□□□ 0.16
VARS2-208ENST00000477052 AEBP1Q8IUX7 1158 aa16.02■□□□□ 0.16
VARS2-208ENST00000477052 WWC3Q9ULE0 1092 aa16.02■□□□□ 0.16
VARS2-208ENST00000477052 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.01■□□□□ 0.15
VARS2-208ENST00000477052 ATG3Q9NT62 314 aa16.01■□□□□ 0.15
VARS2-208ENST00000477052 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.01■□□□□ 0.153e-6■■■□□ 14.8
VARS2-208ENST00000477052 CHD4Q14839 1912 aa16.01■□□□□ 0.15
VARS2-208ENST00000477052 IGSF1Q8N6C5 1336 aa16■□□□□ 0.15
VARS2-208ENST00000477052 ATP6V1AP38606 617 aa16■□□□□ 0.15
VARS2-208ENST00000477052 UBR3Q6ZT12 1888 aa15.99■□□□□ 0.15
VARS2-208ENST00000477052 GNPATO15228 680 aa15.98■□□□□ 0.15
VARS2-208ENST00000477052 ZNF530Q6P9A1 599 aaPredicted RBP15.98■□□□□ 0.15
VARS2-208ENST00000477052 FLAD1Q8NFF5 587 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms