RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 NSD2O96028 1365 aa9.79□□□□□ -0.84
HDAC3-207ENST00000475549 AKT1S1Q96B36 256 aa9.79□□□□□ -0.84
HDAC3-207ENST00000475549 LTN1O94822 1766 aa9.78□□□□□ -0.84
HDAC3-207ENST00000475549 INSRP06213 1382 aa9.78□□□□□ -0.84
HDAC3-207ENST00000475549 SYTL4Q96C24 671 aaPredicted RBP9.78□□□□□ -0.84
HDAC3-207ENST00000475549 MTFR1LQ9H019 292 aa9.78□□□□□ -0.84
HDAC3-207ENST00000475549 RGPD3A6NKT7 1758 aaPredicted RBP9.78□□□□□ -0.84
HDAC3-207ENST00000475549 RGPD4Q7Z3J3 1758 aa9.78□□□□□ -0.84
HDAC3-207ENST00000475549 NSD3Q9BZ95 1437 aa9.77□□□□□ -0.85
HDAC3-207ENST00000475549 SLC27A3Q5K4L6 730 aa9.77□□□□□ -0.85
HDAC3-207ENST00000475549 SYT17Q9BSW7 474 aa9.77□□□□□ -0.85
HDAC3-207ENST00000475549 CASZ1Q86V15 1759 aa9.76□□□□□ -0.85
HDAC3-207ENST00000475549 PPM1GO15355 546 aaPredicted RBP9.76□□□□□ -0.85
HDAC3-207ENST00000475549 CYP27B1O15528 508 aa9.76□□□□□ -0.85
HDAC3-207ENST00000475549 HSPA5P11021 654 aaKnown RBP9.76□□□□□ -0.85
HDAC3-207ENST00000475549 FHDC1Q9C0D6 1143 aaPredicted RBP9.76□□□□□ -0.85
HDAC3-207ENST00000475549 POLKQ9UBT6 870 aa9.76□□□□□ -0.85
HDAC3-207ENST00000475549 NHSQ6T4R5 1651 aa9.76□□□□□ -0.85
HDAC3-207ENST00000475549 FAM208AQ9UK61 1670 aaKnown RBP9.76□□□□□ -0.85
HDAC3-207ENST00000475549 FLT4P35916 1363 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 KIF24Q5T7B8 1368 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 RAPGEF4Q8WZA2 1011 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 EYA1Q99502 592 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 CGNL1Q0VF96 1302 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 WASHC2AQ641Q2 1341 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 PNPLA7Q6ZV29 1317 aa9.75□□□□□ -0.85
HDAC3-207ENST00000475549 PAPPAQ13219 1627 aa9.74□□□□□ -0.85
HDAC3-207ENST00000475549 TATP17735 454 aaPredicted RBP9.74□□□□□ -0.85
HDAC3-207ENST00000475549 NCBP3Q53F19 620 aaKnown RBP9.74□□□□□ -0.85
HDAC3-207ENST00000475549 PANK3Q9H999 370 aa9.74□□□□□ -0.85
HDAC3-207ENST00000475549 YY1P25490 414 aa9.73□□□□□ -0.85
HDAC3-207ENST00000475549 TNNT2P45379 298 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-207ENST00000475549 EIF4G2P78344 907 aaKnown RBP eCLIP9.73□□□□□ -0.85
HDAC3-207ENST00000475549 NKX1-1Q15270 411 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-207ENST00000475549 ARXQ96QS3 562 aa9.73□□□□□ -0.85
HDAC3-207ENST00000475549 POLR3GLQ9BT43 218 aa9.73□□□□□ -0.85
HDAC3-207ENST00000475549 TFCP2L1Q9NZI6 479 aa9.73□□□□□ -0.85
HDAC3-207ENST00000475549 CCNL1Q9UK58 526 aaPredicted RBP9.73□□□□□ -0.85
HDAC3-207ENST00000475549 GOLGB1Q14789 3259 aaKnown RBP9.73□□□□□ -0.85
HDAC3-207ENST00000475549 MPRIPQ6WCQ1 1025 aa9.72□□□□□ -0.85
HDAC3-207ENST00000475549 AMIGO3Q86WK7 504 aa9.72□□□□□ -0.85
HDAC3-207ENST00000475549 COL23A1Q86Y22 540 aaPredicted RBP9.72□□□□□ -0.85
HDAC3-207ENST00000475549 CCER1Q8TC90 406 aaPredicted RBP9.72□□□□□ -0.85
HDAC3-207ENST00000475549 PIGBQ92521 554 aa9.72□□□□□ -0.85
HDAC3-207ENST00000475549 PCDH11XQ9BZA7 1347 aa9.72□□□□□ -0.85
HDAC3-207ENST00000475549 PCDH11YQ9BZA8 1340 aa9.72□□□□□ -0.85
HDAC3-207ENST00000475549 NCAPD2Q15021 1401 aa9.72□□□□□ -0.85
HDAC3-207ENST00000475549 SMG6Q86US8 1419 aaKnown RBP9.72□□□□□ -0.85
HDAC3-207ENST00000475549 BTAF1O14981 1849 aa9.71□□□□□ -0.85
HDAC3-207ENST00000475549 MAPK8IP2Q13387 824 aaPredicted RBP9.71□□□□□ -0.86
HDAC3-207ENST00000475549 EIF4A2Q14240 407 aaKnown RBP9.71□□□□□ -0.86
HDAC3-207ENST00000475549 SLC16A10Q8TF71 515 aa9.71□□□□□ -0.86
HDAC3-207ENST00000475549 MYOM1P52179 1685 aa9.71□□□□□ -0.86
HDAC3-207ENST00000475549 RGPD2P0DJD1 1756 aa9.7□□□□□ -0.86
HDAC3-207ENST00000475549 SMIM5Q71RC9 77 aa9.7□□□□□ -0.86
HDAC3-207ENST00000475549 SHANK3Q9BYB0 1731 aa9.7□□□□□ -0.86
HDAC3-207ENST00000475549 PALLDQ8WX93 1383 aa9.69□□□□□ -0.86
HDAC3-207ENST00000475549 MAP3K5Q99683 1374 aa9.69□□□□□ -0.86
HDAC3-207ENST00000475549 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.69□□□□□ -0.86
HDAC3-207ENST00000475549 PHKG2P15735 406 aa9.68□□□□□ -0.86
HDAC3-207ENST00000475549 NLGN2Q8NFZ4 835 aa9.68□□□□□ -0.86
HDAC3-207ENST00000475549 ASAP1Q9ULH1 1129 aa9.68□□□□□ -0.86
HDAC3-207ENST00000475549 SPG7Q9UQ90 795 aa9.68□□□□□ -0.86
HDAC3-207ENST00000475549 IGSF1Q8N6C5 1336 aa9.67□□□□□ -0.86
HDAC3-207ENST00000475549 DCAF8L1A6NGE4 600 aa9.67□□□□□ -0.86
HDAC3-207ENST00000475549 MSL1Q68DK7 614 aa9.67□□□□□ -0.86
HDAC3-207ENST00000475549 CNKSR2Q8WXI2 1034 aa9.67□□□□□ -0.86
HDAC3-207ENST00000475549 DOT1LQ8TEK3 1739 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 POLD1P28340 1107 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 ITPK1Q13572 414 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 AMER1Q5JTC6 1135 aaPredicted RBP9.66□□□□□ -0.86
HDAC3-207ENST00000475549 AEBP1Q8IUX7 1158 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 IFNL2Q8IZJ0 200 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 LINC00116Q8NCU8 138 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 SLC4A9Q96Q91 983 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 ATG3Q9NT62 314 aa9.66□□□□□ -0.86
HDAC3-207ENST00000475549 LOC102724428A0A0B4J2F2 783 aa9.65□□□□□ -0.86
HDAC3-207ENST00000475549 PER1O15534 1290 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-207ENST00000475549 SIK1P57059 783 aa9.65□□□□□ -0.86
HDAC3-207ENST00000475549 MORC1Q86VD1 984 aa9.65□□□□□ -0.86
HDAC3-207ENST00000475549 KLHL34Q8N239 644 aa9.65□□□□□ -0.86
HDAC3-207ENST00000475549 ZNF784Q8NCA9 323 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-207ENST00000475549 SMARCC1Q92922 1105 aaPredicted RBP9.65□□□□□ -0.86
HDAC3-207ENST00000475549 KIF7Q2M1P5 1343 aa9.64□□□□□ -0.87
HDAC3-207ENST00000475549 KIF20BQ96Q89 1820 aa9.64□□□□□ -0.87
HDAC3-207ENST00000475549 IL13P35225 146 aa9.64□□□□□ -0.87
HDAC3-207ENST00000475549 TMOD3Q9NYL9 352 aa9.64□□□□□ -0.87
HDAC3-207ENST00000475549 LY75O60449 1722 aa9.64□□□□□ -0.87
HDAC3-207ENST00000475549 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.63□□□□□ -0.87
HDAC3-207ENST00000475549 PHF14O94880 888 aa9.63□□□□□ -0.87
HDAC3-207ENST00000475549 YBX3P16989 372 aaKnown RBP eCLIP9.63□□□□□ -0.87
HDAC3-207ENST00000475549 GPR162Q16538 588 aa9.63□□□□□ -0.87
HDAC3-207ENST00000475549 KNSTRNQ9Y448 316 aa9.63□□□□□ -0.87
HDAC3-207ENST00000475549 ANKRD26Q9UPS8 1709 aa9.62□□□□□ -0.87
HDAC3-207ENST00000475549 TOGARAM1Q9Y4F4 1720 aa9.62□□□□□ -0.87
HDAC3-207ENST00000475549 ERVV-2B6SEH9 535 aa9.62□□□□□ -0.87
HDAC3-207ENST00000475549 ATP6V1AP38606 617 aa9.62□□□□□ -0.87
HDAC3-207ENST00000475549 PLEKHO1Q53GL0 409 aaPredicted RBP9.62□□□□□ -0.87
HDAC3-207ENST00000475549 FLAD1Q8NFF5 587 aa9.62□□□□□ -0.87
HDAC3-207ENST00000475549 DCAF5Q96JK2 942 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms