RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 EIF4G2P78344 907 aaKnown RBP eCLIP7.29□□□□□ -1.24
SCN1A-205ENST00000473295 KDF1Q8NAX2 398 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-205ENST00000473295 SV2AQ7L0J3 742 aa7.28□□□□□ -1.24
SCN1A-205ENST00000473295 PCDHB11Q9Y5F2 797 aa7.28□□□□□ -1.24
SCN1A-205ENST00000473295 LORP23490 312 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-205ENST00000473295 NLRP3Q96P20 1036 aa7.27□□□□□ -1.25
SCN1A-205ENST00000473295 TBC1D2BQ9UPU7 963 aa7.27□□□□□ -1.25
SCN1A-205ENST00000473295 MEN1O00255 615 aa7.26□□□□□ -1.25
SCN1A-205ENST00000473295 MYCP01106 439 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-205ENST00000473295 GMCL1Q96IK5 515 aa7.26□□□□□ -1.25
SCN1A-205ENST00000473295 CEP126Q9P2H0 1117 aa7.26□□□□□ -1.25
SCN1A-205ENST00000473295 A0A1W2PRU2 124 aa7.25□□□□□ -1.25
SCN1A-205ENST00000473295 CDC14CA4D256 554 aa7.25□□□□□ -1.25
SCN1A-205ENST00000473295 TRAK2O60296 914 aa7.25□□□□□ -1.25
SCN1A-205ENST00000473295 WASHC4Q2M389 1173 aa7.25□□□□□ -1.25
SCN1A-205ENST00000473295 SENP3-EIF4A1A0A087X0R7 540 aa7.24□□□□□ -1.25
SCN1A-205ENST00000473295 GNRH1P01148 92 aa7.24□□□□□ -1.25
SCN1A-205ENST00000473295 CLN3Q13286 438 aa7.24□□□□□ -1.25
SCN1A-205ENST00000473295 SLC27A3Q5K4L6 730 aa7.24□□□□□ -1.25
SCN1A-205ENST00000473295 PRICKLE2Q7Z3G6 844 aa7.24□□□□□ -1.25
SCN1A-205ENST00000473295 SIRT1Q96EB6 747 aa7.24□□□□□ -1.25
SCN1A-205ENST00000473295 SLFNL1Q499Z3 407 aa7.23□□□□□ -1.25
SCN1A-205ENST00000473295 VWA5B2Q8N398 1253 aa7.23□□□□□ -1.25
SCN1A-205ENST00000473295 GPR161Q8N6U8 529 aaKnown RBP7.23□□□□□ -1.25
SCN1A-205ENST00000473295 CNTNAP3BQ96NU0 1288 aa7.23□□□□□ -1.25
SCN1A-205ENST00000473295 COL25A1Q9BXS0 654 aaPredicted RBP7.23□□□□□ -1.25
SCN1A-205ENST00000473295 CNTNAP3Q9BZ76 1288 aa7.23□□□□□ -1.25
SCN1A-205ENST00000473295 OSBPL3Q9H4L5 887 aa7.23□□□□□ -1.25
SCN1A-205ENST00000473295 SOX11P35716 441 aa7.22□□□□□ -1.25
SCN1A-205ENST00000473295 SCTRP47872 440 aa7.22□□□□□ -1.25
SCN1A-205ENST00000473295 USP4Q13107 963 aa7.22□□□□□ -1.25
SCN1A-205ENST00000473295 WDR44Q5JSH3 913 aa7.22□□□□□ -1.25
SCN1A-205ENST00000473295 ARHGEF10LQ9HCE6 1279 aa7.22□□□□□ -1.25
SCN1A-205ENST00000473295 DYRK1BQ9Y463 629 aa7.22□□□□□ -1.25
SCN1A-205ENST00000473295 SPATA31C2B4DYI2 1134 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 H7C1W4 665 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 RHOQP17081 205 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 GTF2E1P29083 439 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-205ENST00000473295 IRF5Q13568 498 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 ESCO1Q5FWF5 840 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 FOXR1Q6PIV2 292 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 GRIP2Q9C0E4 1043 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 DOLKQ9UPQ8 538 aa7.21□□□□□ -1.26
SCN1A-205ENST00000473295 PRKCSHP14314 528 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-205ENST00000473295 ABL2P42684 1182 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 KRT76Q01546 638 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 MCM6Q14566 821 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 RNF135Q8IUD6 432 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 WWC1Q8IX03 1113 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 CCDC85AQ96PX6 553 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-205ENST00000473295 ESYT1Q9BSJ8 1104 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 GDPD2Q9HCC8 539 aa7.2□□□□□ -1.26
SCN1A-205ENST00000473295 VAC14Q08AM6 782 aa7.19□□□□□ -1.26
SCN1A-205ENST00000473295 TAS1R3Q7RTX0 852 aa7.19□□□□□ -1.26
SCN1A-205ENST00000473295 TRIM22Q8IYM9 498 aa7.19□□□□□ -1.26
SCN1A-205ENST00000473295 CNKSR1Q969H4 720 aa7.19□□□□□ -1.26
SCN1A-205ENST00000473295 WASLO00401 505 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-205ENST00000473295 POU4F2Q12837 409 aa7.18□□□□□ -1.26
SCN1A-205ENST00000473295 SEMA3FQ13275 785 aa7.18□□□□□ -1.26
SCN1A-205ENST00000473295 MAP7D1Q3KQU3 841 aa7.18□□□□□ -1.26
SCN1A-205ENST00000473295 NBPF10Q6P3W6 841 aaKnown RBP7.18□□□□□ -1.26
SCN1A-205ENST00000473295 PHTF2Q8N3S3 785 aa7.18□□□□□ -1.26
SCN1A-205ENST00000473295 NBPF15Q8N660 670 aa7.18□□□□□ -1.26
SCN1A-205ENST00000473295 CDCA7Q9BWT1 371 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-205ENST00000473295 RNF225M0QZC1 329 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-205ENST00000473295 SLURP2P0DP57 97 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 SRSF11Q05519 484 aaKnown RBP7.17□□□□□ -1.26
SCN1A-205ENST00000473295 RNFT1Q5M7Z0 435 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 RIPOR1Q6ZS17 1223 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 SVOPQ8N4V2 548 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 ZNF837Q96EG3 531 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-205ENST00000473295 ZSCAN10Q96SZ4 725 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-205ENST00000473295 TIMMDC1Q9NPL8 285 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 RAB6BQ9NRW1 208 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 CHIC2Q9UKJ5 165 aa7.17□□□□□ -1.26
SCN1A-205ENST00000473295 IL2RAP01589 272 aa7.16□□□□□ -1.26
SCN1A-205ENST00000473295 CENPCQ03188 943 aa7.16□□□□□ -1.26
SCN1A-205ENST00000473295 GNASQ5JWF2 1037 aa7.16□□□□□ -1.26
SCN1A-205ENST00000473295 XAGE2Q96GT9 111 aa7.16□□□□□ -1.26
SCN1A-205ENST00000473295 TRERF1Q96PN7 1200 aa7.16□□□□□ -1.26
SCN1A-205ENST00000473295 GAS2L1Q99501 681 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-205ENST00000473295 F11P03951 625 aa7.15□□□□□ -1.26
SCN1A-205ENST00000473295 OXLD1Q5BKU9 147 aa7.15□□□□□ -1.26
SCN1A-205ENST00000473295 MBIPQ9NS73 344 aa7.15□□□□□ -1.26
SCN1A-205ENST00000473295 CUEDC1Q9NWM3 386 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-205ENST00000473295 A0A1B0GTH6 734 aa7.14□□□□□ -1.27
SCN1A-205ENST00000473295 RAD21O60216 631 aa7.14□□□□□ -1.27
SCN1A-205ENST00000473295 FLIIQ13045 1269 aa7.14□□□□□ -1.27
SCN1A-205ENST00000473295 ZNF385CQ66K41 422 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-205ENST00000473295 TMEM214Q6NUQ4 689 aaKnown RBP7.14□□□□□ -1.27
SCN1A-205ENST00000473295 COG6Q9Y2V7 657 aa7.14□□□□□ -1.27
SCN1A-205ENST00000473295 HRH3Q9Y5N1 445 aa7.14□□□□□ -1.27
SCN1A-205ENST00000473295 LZTS3O60299 673 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-205ENST00000473295 ADAMTS2O95450 1211 aa7.13□□□□□ -1.27
SCN1A-205ENST00000473295 MAP3K10Q02779 954 aa7.13□□□□□ -1.27
SCN1A-205ENST00000473295 KCNMA1Q12791 1236 aa7.13□□□□□ -1.27
SCN1A-205ENST00000473295 LBRQ14739 615 aaKnown RBP7.13□□□□□ -1.27
SCN1A-205ENST00000473295 DBN1Q16643 649 aa7.13□□□□□ -1.27
SCN1A-205ENST00000473295 PLPP7Q8NBV4 271 aa7.13□□□□□ -1.27
SCN1A-205ENST00000473295 NUCKS1Q9H1E3 243 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms