RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 DDX54Q8TDD1 881 aaKnown RBP12.49□□□□□ -0.41
USF1-204ENST00000472217 TXNRD1Q16881 649 aa12.48□□□□□ -0.41
USF1-204ENST00000472217 SRCAPQ6ZRS2 3230 aa12.48□□□□□ -0.41
USF1-204ENST00000472217 CASZ1Q86V15 1759 aa12.48□□□□□ -0.41
USF1-204ENST00000472217 PAPPAQ13219 1627 aa12.47□□□□□ -0.41
USF1-204ENST00000472217 ZCRB1Q8TBF4 217 aaKnown RBP12.46□□□□□ -0.41
USF1-204ENST00000472217 MAP2P11137 1827 aaKnown RBP12.46□□□□□ -0.42
USF1-204ENST00000472217 PPM1GO15355 546 aaPredicted RBP12.45□□□□□ -0.42
USF1-204ENST00000472217 RAPGEF4Q8WZA2 1011 aa12.45□□□□□ -0.42
USF1-204ENST00000472217 PANK3Q9H999 370 aa12.45□□□□□ -0.42
USF1-204ENST00000472217 NCAPD2Q15021 1401 aa12.45□□□□□ -0.42
USF1-204ENST00000472217 PKD1L3Q7Z443 1732 aa12.44□□□□□ -0.42
USF1-204ENST00000472217 NSD2O96028 1365 aa12.43□□□□□ -0.42
USF1-204ENST00000472217 WASHC2AQ641Q2 1341 aa12.43□□□□□ -0.42
USF1-204ENST00000472217 TATP17735 454 aaPredicted RBP12.43□□□□□ -0.42
USF1-204ENST00000472217 TNNT2P45379 298 aaPredicted RBP12.43□□□□□ -0.42
USF1-204ENST00000472217 PRIM1P49642 420 aaKnown RBP12.43□□□□□ -0.42
USF1-204ENST00000472217 SLC15A2Q16348 729 aa12.43□□□□□ -0.42
USF1-204ENST00000472217 SYTL4Q96C24 671 aaPredicted RBP12.43□□□□□ -0.42
USF1-204ENST00000472217 PDGFDQ9GZP0 370 aaPredicted RBP12.43□□□□□ -0.42
USF1-204ENST00000472217 SPON1Q9HCB6 807 aa12.43□□□□□ -0.42
USF1-204ENST00000472217 STK32BQ9NY57 414 aa12.43□□□□□ -0.42
USF1-204ENST00000472217 POLKQ9UBT6 870 aa12.43□□□□□ -0.42
USF1-204ENST00000472217 LRRC4BQ9NT99 713 aa12.42□□□□□ -0.42
USF1-204ENST00000472217 LY75O60449 1722 aa12.42□□□□□ -0.42
USF1-204ENST00000472217 PCDH11XQ9BZA7 1347 aa12.41□□□□□ -0.42
USF1-204ENST00000472217 PCDH11YQ9BZA8 1340 aa12.41□□□□□ -0.42
USF1-204ENST00000472217 MSH5O43196 834 aa12.41□□□□□ -0.42
USF1-204ENST00000472217 TOGARAM1Q9Y4F4 1720 aa12.4□□□□□ -0.42
USF1-204ENST00000472217 KAT6BQ8WYB5 2073 aa12.4□□□□□ -0.42
USF1-204ENST00000472217 KIF7Q2M1P5 1343 aa12.39□□□□□ -0.43
USF1-204ENST00000472217 CYP27B1O15528 508 aa12.39□□□□□ -0.43
USF1-204ENST00000472217 ZBTB7AO95365 584 aa12.39□□□□□ -0.43
USF1-204ENST00000472217 ZNF827Q17R98 1081 aa12.39□□□□□ -0.43
USF1-204ENST00000472217 EYA1Q99502 592 aa12.39□□□□□ -0.43
USF1-204ENST00000472217 KCNQ4P56696 695 aa12.38□□□□□ -0.43
USF1-204ENST00000472217 EIF4A2Q14240 407 aaKnown RBP12.38□□□□□ -0.43
USF1-204ENST00000472217 SLC27A3Q5K4L6 730 aa12.38□□□□□ -0.43
USF1-204ENST00000472217 PPP1R1BQ9UD71 204 aaPredicted RBP12.38□□□□□ -0.43
USF1-204ENST00000472217 QSER1Q2KHR3 1735 aa12.37□□□□□ -0.43
USF1-204ENST00000472217 TUBGCP6Q96RT7 1819 aa12.37□□□□□ -0.43
USF1-204ENST00000472217 PTGER2P43116 358 aa12.37□□□□□ -0.43
USF1-204ENST00000472217 MORC1Q86VD1 984 aa12.37□□□□□ -0.43
USF1-204ENST00000472217 KNSTRNQ9Y448 316 aa12.37□□□□□ -0.43
USF1-204ENST00000472217 ITGB4P16144 1822 aa12.37□□□□□ -0.43
USF1-204ENST00000472217 AKT1S1Q96B36 256 aa12.36□□□□□ -0.43
USF1-204ENST00000472217 SPG7Q9UQ90 795 aa12.36□□□□□ -0.43
USF1-204ENST00000472217 ATF5Q9Y2D1 282 aaPredicted RBP12.36□□□□□ -0.43
USF1-204ENST00000472217 IGSF1Q8N6C5 1336 aa12.36□□□□□ -0.43
USF1-204ENST00000472217 C5P01031 1676 aa12.35□□□□□ -0.43
USF1-204ENST00000472217 MTFR1LQ9H019 292 aa12.35□□□□□ -0.43
USF1-204ENST00000472217 AMER1Q5JTC6 1135 aaPredicted RBP12.34□□□□□ -0.43
USF1-204ENST00000472217 MPRIPQ6WCQ1 1025 aa12.34□□□□□ -0.43
USF1-204ENST00000472217 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.34□□□□□ -0.43
USF1-204ENST00000472217 CCNL1Q9UK58 526 aaPredicted RBP12.34□□□□□ -0.43
USF1-204ENST00000472217 PNPLA7Q6ZV29 1317 aa12.34□□□□□ -0.43
USF1-204ENST00000472217 PALLDQ8WX93 1383 aa12.33□□□□□ -0.44
USF1-204ENST00000472217 PLEKHG2Q9H7P9 1386 aa12.33□□□□□ -0.44
USF1-204ENST00000472217 NKX1-1Q15270 411 aaPredicted RBP12.33□□□□□ -0.44
USF1-204ENST00000472217 SGIP1Q9BQI5 828 aa12.33□□□□□ -0.44
USF1-204ENST00000472217 TAF1LQ8IZX4 1826 aa12.32□□□□□ -0.44
USF1-204ENST00000472217 PER1O15534 1290 aaPredicted RBP12.32□□□□□ -0.44
USF1-204ENST00000472217 PHKG2P15735 406 aa12.32□□□□□ -0.44
USF1-204ENST00000472217 TFCP2L1Q9NZI6 479 aa12.32□□□□□ -0.44
USF1-204ENST00000472217 COL24A1Q17RW2 1714 aa12.31□□□□□ -0.44
USF1-204ENST00000472217 IFNL2Q8IZJ0 200 aa12.31□□□□□ -0.44
USF1-204ENST00000472217 PIGBQ92521 554 aa12.31□□□□□ -0.44
USF1-204ENST00000472217 AEBP1Q8IUX7 1158 aa12.3□□□□□ -0.44
USF1-204ENST00000472217 SMARCC1Q92922 1105 aaPredicted RBP12.3□□□□□ -0.44
USF1-204ENST00000472217 C4BP0C0L5 1744 aa12.3□□□□□ -0.44
USF1-204ENST00000472217 SLC16A10Q8TF71 515 aa12.29□□□□□ -0.44
USF1-204ENST00000472217 FHDC1Q9C0D6 1143 aaPredicted RBP12.29□□□□□ -0.44
USF1-204ENST00000472217 TMOD3Q9NYL9 352 aa12.29□□□□□ -0.44
USF1-204ENST00000472217 KDRP35968 1356 aa12.29□□□□□ -0.44
USF1-204ENST00000472217 IL13P35225 146 aa12.28□□□□□ -0.44
USF1-204ENST00000472217 CC2D1BQ5T0F9 858 aaKnown RBP12.28□□□□□ -0.44
USF1-204ENST00000472217 ARXQ96QS3 562 aa12.28□□□□□ -0.44
USF1-204ENST00000472217 SYT17Q9BSW7 474 aa12.28□□□□□ -0.44
USF1-204ENST00000472217 MTHFSP49914 203 aa12.27□□□□□ -0.45
USF1-204ENST00000472217 PLEKHO1Q53GL0 409 aaPredicted RBP12.27□□□□□ -0.45
USF1-204ENST00000472217 SULT6B1Q6IMI4 303 aa12.27□□□□□ -0.45
USF1-204ENST00000472217 ZNF530Q6P9A1 599 aaPredicted RBP12.27□□□□□ -0.45
USF1-204ENST00000472217 KDM6AO15550 1401 aaPredicted RBP12.27□□□□□ -0.45
USF1-204ENST00000472217 UBR3Q6ZT12 1888 aa12.26□□□□□ -0.45
USF1-204ENST00000472217 AMOTQ4VCS5 1084 aa12.26□□□□□ -0.45
USF1-204ENST00000472217 COL23A1Q86Y22 540 aaPredicted RBP12.26□□□□□ -0.45
USF1-204ENST00000472217 DCAF5Q96JK2 942 aa12.26□□□□□ -0.45
USF1-204ENST00000472217 ASAP1Q9ULH1 1129 aa12.26□□□□□ -0.45
USF1-204ENST00000472217 MAP3K5Q99683 1374 aa12.26□□□□□ -0.45
USF1-204ENST00000472217 NPC1L1Q9UHC9 1359 aa12.26□□□□□ -0.45
USF1-204ENST00000472217 LOC102724428A0A0B4J2F2 783 aa12.25□□□□□ -0.45
USF1-204ENST00000472217 HSP90AB1P08238 724 aaKnown RBP12.25□□□□□ -0.45
USF1-204ENST00000472217 HMGB2P26583 209 aaKnown RBP12.25□□□□□ -0.45
USF1-204ENST00000472217 POLD1P28340 1107 aa12.25□□□□□ -0.45
USF1-204ENST00000472217 SIK1P57059 783 aa12.25□□□□□ -0.45
USF1-204ENST00000472217 CNGB1Q14028 1251 aaPredicted RBP12.25□□□□□ -0.45
USF1-204ENST00000472217 DCAF8L1A6NGE4 600 aa12.24□□□□□ -0.45
USF1-204ENST00000472217 ERVV-2B6SEH9 535 aa12.24□□□□□ -0.45
USF1-204ENST00000472217 COL3A1P02461 1466 aaPredicted RBP12.24□□□□□ -0.45
USF1-204ENST00000472217 ZNF831Q5JPB2 1677 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms