RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 NLRP3Q96P20 1036 aa8.05□□□□□ -1.12
PRPF40A-207ENST00000471701 CDC14CA4D256 554 aa8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 ITGA6P23229 1130 aa8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 ERVK-9P63128 1117 aa8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 EIF4G2P78344 907 aaKnown RBP eCLIP8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 FOXD4L5Q5VV16 416 aaPredicted RBP8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 GPR161Q8N6U8 529 aaKnown RBP8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 CEP126Q9P2H0 1117 aa8.04□□□□□ -1.12
PRPF40A-207ENST00000471701 A0A1W2PRU2 124 aa8.03□□□□□ -1.12
PRPF40A-207ENST00000471701 CYP2U1Q7Z449 544 aa8.03□□□□□ -1.12
PRPF40A-207ENST00000471701 CNTNAP3BQ96NU0 1288 aa8.03□□□□□ -1.12
PRPF40A-207ENST00000471701 CNTNAP3Q9BZ76 1288 aa8.03□□□□□ -1.12
PRPF40A-207ENST00000471701 PRKCSHP14314 528 aaPredicted RBP8.02□□□□□ -1.13
PRPF40A-207ENST00000471701 LORP23490 312 aaPredicted RBP8.02□□□□□ -1.13
PRPF40A-207ENST00000471701 GPC1P35052 558 aa8.02□□□□□ -1.13
PRPF40A-207ENST00000471701 SLC27A3Q5K4L6 730 aa8.02□□□□□ -1.13
PRPF40A-207ENST00000471701 TBC1D2BQ9UPU7 963 aa8.02□□□□□ -1.13
PRPF40A-207ENST00000471701 MYCP01106 439 aaPredicted RBP8.01□□□□□ -1.13
PRPF40A-207ENST00000471701 COL25A1Q9BXS0 654 aaPredicted RBP8.01□□□□□ -1.13
PRPF40A-207ENST00000471701 RHOQP17081 205 aa8□□□□□ -1.13
PRPF40A-207ENST00000471701 GPR37L1O60883 481 aa7.99□□□□□ -1.13
PRPF40A-207ENST00000471701 SCTRP47872 440 aa7.99□□□□□ -1.13
PRPF40A-207ENST00000471701 SLFNL1Q499Z3 407 aa7.99□□□□□ -1.13
PRPF40A-207ENST00000471701 SENP3-EIF4A1A0A087X0R7 540 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 GNRH1P01148 92 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 POU4F2Q12837 409 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 USP4Q13107 963 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 CLN3Q13286 438 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 FOXR1Q6PIV2 292 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 OSBPL3Q9H4L5 887 aa7.98□□□□□ -1.13
PRPF40A-207ENST00000471701 TRAK2O60296 914 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 ABL2P42684 1182 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 WASHC4Q2M389 1173 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 RIPOR1Q6ZS17 1223 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 GMCL1Q96IK5 515 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 GDPD2Q9HCC8 539 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 ARHGEF10LQ9HCE6 1279 aa7.97□□□□□ -1.13
PRPF40A-207ENST00000471701 GTF2E1P29083 439 aaPredicted RBP7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 KRT76Q01546 638 aa7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 SIRT1Q96EB6 747 aa7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 CCDC85AQ96PX6 553 aaPredicted RBP7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 GAS2L1Q99501 681 aaPredicted RBP7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 CDCA7Q9BWT1 371 aaPredicted RBP7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 GRIP2Q9C0E4 1043 aa7.96□□□□□ -1.14
PRPF40A-207ENST00000471701 H7C1W4 665 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 VAC14Q08AM6 782 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 IRF5Q13568 498 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 RNF135Q8IUD6 432 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 CNKSR1Q969H4 720 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 DOLKQ9UPQ8 538 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 DYRK1BQ9Y463 629 aa7.95□□□□□ -1.14
PRPF40A-207ENST00000471701 CENPCQ03188 943 aa7.94□□□□□ -1.14
PRPF40A-207ENST00000471701 SEMA3FQ13275 785 aa7.94□□□□□ -1.14
PRPF40A-207ENST00000471701 ESCO1Q5FWF5 840 aa7.94□□□□□ -1.14
PRPF40A-207ENST00000471701 WDR44Q5JSH3 913 aa7.94□□□□□ -1.14
PRPF40A-207ENST00000471701 RNFT1Q5M7Z0 435 aa7.94□□□□□ -1.14
PRPF40A-207ENST00000471701 ESYT1Q9BSJ8 1104 aa7.94□□□□□ -1.14
PRPF40A-207ENST00000471701 TSGA10IPQ3SY00 556 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 NBPF10Q6P3W6 841 aaKnown RBP7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 TAS1R3Q7RTX0 852 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 TRIM22Q8IYM9 498 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 PHTF2Q8N3S3 785 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 NBPF15Q8N660 670 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 TIMMDC1Q9NPL8 285 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 RAB6BQ9NRW1 208 aa7.93□□□□□ -1.14
PRPF40A-207ENST00000471701 SPATA31C2B4DYI2 1134 aa7.92□□□□□ -1.14
PRPF40A-207ENST00000471701 WWC1Q8IX03 1113 aa7.92□□□□□ -1.14
PRPF40A-207ENST00000471701 SVOPQ8N4V2 548 aa7.92□□□□□ -1.14
PRPF40A-207ENST00000471701 XAGE2Q96GT9 111 aa7.92□□□□□ -1.14
PRPF40A-207ENST00000471701 ZSCAN10Q96SZ4 725 aaPredicted RBP7.92□□□□□ -1.14
PRPF40A-207ENST00000471701 CUEDC1Q9NWM3 386 aaPredicted RBP7.92□□□□□ -1.14
PRPF40A-207ENST00000471701 WASLO00401 505 aaPredicted RBP7.91□□□□□ -1.14
PRPF40A-207ENST00000471701 SOX11P35716 441 aa7.91□□□□□ -1.14
PRPF40A-207ENST00000471701 DBN1Q16643 649 aa7.91□□□□□ -1.14
PRPF40A-207ENST00000471701 OXLD1Q5BKU9 147 aa7.91□□□□□ -1.14
PRPF40A-207ENST00000471701 TMEM214Q6NUQ4 689 aaKnown RBP7.91□□□□□ -1.14
PRPF40A-207ENST00000471701 TRERF1Q96PN7 1200 aa7.91□□□□□ -1.14
PRPF40A-207ENST00000471701 IL2RAP01589 272 aa7.9□□□□□ -1.14
PRPF40A-207ENST00000471701 F11P03951 625 aa7.9□□□□□ -1.14
PRPF40A-207ENST00000471701 SLURP2P0DP57 97 aa7.9□□□□□ -1.14
PRPF40A-207ENST00000471701 MAP7D1Q3KQU3 841 aa7.9□□□□□ -1.14
PRPF40A-207ENST00000471701 GNASQ5JWF2 1037 aa7.9□□□□□ -1.14
PRPF40A-207ENST00000471701 ADAMTS8Q9UP79 889 aa7.9□□□□□ -1.14
PRPF40A-207ENST00000471701 ADAMTS2O95450 1211 aa7.89□□□□□ -1.15
PRPF40A-207ENST00000471701 PHKA2P46019 1235 aa7.89□□□□□ -1.15
PRPF40A-207ENST00000471701 SRSF11Q05519 484 aaKnown RBP7.89□□□□□ -1.15
PRPF40A-207ENST00000471701 MCM6Q14566 821 aa7.89□□□□□ -1.15
PRPF40A-207ENST00000471701 ZNF385CQ66K41 422 aaPredicted RBP7.89□□□□□ -1.15
PRPF40A-207ENST00000471701 ZNF837Q96EG3 531 aaPredicted RBP7.89□□□□□ -1.15
PRPF40A-207ENST00000471701 RAD21O60216 631 aa7.88□□□□□ -1.15
PRPF40A-207ENST00000471701 GTPBP3Q969Y2 492 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-207ENST00000471701 GPR25O00155 361 aa7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 MARSP56192 900 aaKnown RBP7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 MAP3K10Q02779 954 aa7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 NUCKS1Q9H1E3 243 aaKnown RBP7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 ENAMQ9NRM1 1142 aa7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 MBIPQ9NS73 344 aa7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 CHIC2Q9UKJ5 165 aa7.87□□□□□ -1.15
PRPF40A-207ENST00000471701 RNF225M0QZC1 329 aaPredicted RBP7.86□□□□□ -1.15
PRPF40A-207ENST00000471701 CSB-PGBD3P0DP91 1061 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms